rna6669, rna6669 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6669
Unique Name	rna6669
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2804
Alignment location	CM002469.1:217745..219481 +

Link to JBrowse

Properties


Property Name	Value
Product	rnp-1 like rna-binding protein
Orig transcript id	gnl\|cribi\|Naga_100040g17.1999.mrna
Orig protein id	gnl\|cribi\|Naga_100040g17.1999
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002469.1	supercontig	CM002469.1:217745..219481 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100040g17	gene6447	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6669	rna6669-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24001.1	cds6653	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002469.1:217745..219481+
coding sequence from alignment at CM002469.1:217745..219481+

mRNA sequence

>rna6669 ID=rna6669|Name=rna6669|organism=Nannochloropsis gaditana|type=mRNA|length=2804bp
CATCTTTTTTTTCGGGGCGCTTCCGGGATATCACACTTCTCTGTTGTTTC
CATGTTAACGCTTTTGAATCATTATGGACCCTTCTCTGGTTTTGAATTTC
TGGTCAGCACCGAAGTCAGCATGCGGCAGGTCTCGACCATTCAGGCTGGC
CGGGCGCTTGCCGTTGCATTTATGGCGGCCGGCGCTTTGGCATTCATCCC
TTCTTCGGTCCTGCCCAAATCCCGTCTGGCTGCGAATGTGGCTCGCCGTG
GAGCTCTCCGTATGGACGTTGGGGAAGGAGGCCAGAAGCTGGCCAAGATT
GAGCAACTGAAGATCCGCTCGGACTATTTGCGCCATCCCCTCTCGGAAGA
GCTTGACAACCAGGAGATTTTCCTGGGGACGGACGCCATCCAAGTCGTCA
AGTACCATGGGTCGTACCAGCAGGACAACCGAGAGCTTCGGAAGGCCGGC
GAGCAAAAGAAATATTCCTTCATGCTGCGGCTCAAGTCACCCGCCGGGGA
GGTCACTCCAGAGCTGTACAAGGTGGTGGACGACTTGTGCAGCGAGTACG
GGCAGAACGACCTTCGAGCCACTACCCGACAGTGCTTCCAGATCCATGGC
ATCCTCAAGGGCAATTTGAAGACGGTTATCTCCTCCATCATGAACATCGG
CTCCTCCACCGTTGGGGCCTGCGGGGACGTTGTCAGGAACGTGGGCTGCA
CGCCTGCCCCTTTTACGGCCCCGGCCTACGCCTACGCGCGTGAGTACAGC
AAGATCTTCGCAGAGCTGTTCAAGCCGCAGACGACGGCATTTTCTGAAAT
TTGGCTCGGCGATGACAAGGCTGCGAGCGTGGAGTACTGGAAAGGGGACA
TCGAAAAGTGGGACGTGGAGAAGATCCGCGGCCATGACAACGGCCACGGC
GTCCTGGTCAAGAACAAGGTGGAGCCCCTGTACGGCGATCGTTACCTGCC
CCGGAAGTTCAAAATTTCAATCACGGTCCCGGGTGACAACAGCATCGATC
TGTACACGAACGACATCGGCTTAGTGGTGCTGACGGATAAGGAGGGGGTT
CTGGAGGGCTTCAACGTAATGGTGGGCGGGGGCATGGGGCGGACGCACAA
CAAGGAGCAGTCCTTCCCTCGGGCCGCGGACCACCTGGGCTTCGTGGCCA
AGGACGACGTCTTCGAGCTGATGAAGTGCATCGTGGCGGCGCAGCGCGAC
CATGGGAATCGGGAGGTGCGGATGAACGCGCGCATGAAGTACTTGGTCCA
TAATCTGGGCATCGACGGCTTCCGGGGTCTGGTGGAGGGCTACTTTGGCA
AGCCGATCGAGCCCTGGAGGCCCATGCAGGAGTGGAAATACATGGACTGG
ATGGGCTGGCACGAGCAGGGGGACGGGAAGCTGTTCCTTGGCGTGAGTGT
GGAGAACGGGCGTATTCGAAATTTTGAAAATGGGCCGCAGTTGAAGACCG
CGCTTCGGAGGATCGTGGACGAGTACAACCTGTCGATGGTCATGTCGCCG
GCTCAGTCGGTGATTTTTAAGGACATCCGCCCCGAGGATAAGGCAGGGAT
CGAAAGCATTCTGGCTGAGAACCAGGTGGCCCCCGTGGAGAGCTTCGACC
CGATCACCCGCCACGCTATGGCCTGCCCGGCCTTGCCCCTGTGCGGCCTC
GCCATCACGGAAGCAGAGCGGACGTTGCCAGAGCTGACGCGTAAGCTGCA
TGGTCTCTTGGAAGGGATGGGCTTGGGGGAGGAACAGATCATCACCCGCA
TGACGGGCTGCCCGAACGGCTGTGCCCGCCCTTACATGGCTGAGCTGGCC
TTTGTGGGGGATGGGGCGAACTCCTACCAGGTGTGGTTGGGCGGCTCGCC
TGTCCTGACACGAACCGCCTACGCGCTCAAGGACAAGGTGAAGATGCCGG
AGATGGAGGCGTTCTTGGCGCCGATCTTCCGAATGTACAAGGAGGAGAGA
CAGGAGGGGGAGGCCTTCGGGGACTGGACGTGGCGTGTGGGGAAGGAGGG
ATTGTTGGCAAAGCTGGCATGAGGGAGAGAGAGAGAGAGAGGATGAGGAG
GACGTAGGGCTCGCACGCGAAGGCGTGCGAGCAGGCTGGGGTGTGTCGTG
GAGGTCCCGTCTGAGAGTGGCCCTCTGGAAAGGTCAATAAGAGGGAAAAT
GATGGGTGGATAGGGGAAGCGAGAGGCATGAATAGAAGCAGTATGGAAGT
CAGCGGGGCTCCAAGGCTGTGTCGTCTTCGGGCGCGACCATCAACCATCA
AGGAAGGTCATCTGGGGCTTCACACTTTTGACGGAGCTTCGGCGGAGGAA
AGGGGAAGATATAGGAGAGAGGAAGCTTGGTTCGAGTCTGTCGGGACATC
CTGCCGCTCGGAGCCAAGCTCTGCGACAAGCAAATCGCAGCGATGGCAGT
GATGTAAGGGTCAAGTGTAATGGAGTCGTCCTGAAACCGCACGGAAGGAA
GCGCGAGGTCCGGCAGAAATATTTTCTGCTTCCGGTCTGATGTCACCATA
TTTTGAATGAAGGAGCTACATAAAAGGCGGAAGGGGTAGCGACCAGTAAG
TGCAGCTATCTATGAGAGAATAAAAAAGTAAAAGGGCACTGCGGAGGACA
TAAATTCAGTCATTCAGTGGTAACTTTCGGAGCAGAAAGACGAGGGAACT
CCACCCTTGCTACCCAATGAGAAGAAAAAAAGGACAGGAGACGATTAAGC
TGCCCAATTAGATTCCAGCACTTGCAAAGATTGCTCTAATATTGGATGAA
AATTCACTTCATTTATCGTGCAATAACTTTGAAATCGCAATAACTTGACT
GTTG

protein sequence of rna6669

>rna6669-protein ID=rna6669-protein|Name=rna6669|organism=Nannochloropsis gaditana|type=polypeptide|length=162bp
MFRTLTHSALLVLVLMALASVRAFLPSPCRMPPTMKVGKSSSTGRGKSIG
IINSMRENIEGEPNPTQIMVSNLPFDTSTEELEAFASQAGQVVNVKIILD
RETGRSKGYGFVLFTEPLSATYALERLDGMELGGRPLKIRPAIRKTYPNT
RGGGGYGGDNNY

mRNA from alignment at CM002469.1:217745..219481+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6669 ID=rna6669|Name=rna6669|organism=Nannochloropsis gaditana|type=mRNA|length=1737bp|location=Sequence derived from alignment at CM002469.1:217745..219481+ (Nannochloropsis gaditana)
CAACTACCTTTTGTTCAAAATCCCTTCAATGGACAGGACGCGAGTGATGG
AAAAAGTGATACCgggtctccctctttcattcCACTGGCGTGTCAATTGT
gtttggagggggaaaatcAGTCGGTATAATGAAGTACATGGTTTGCGGGT
GGGGAGTTGGTGGCTGTGGTGGCATGTTGGACGCTGGCGTGCGTATGCCA
TGGAGCGTATCCTCCCTGCTGTTGATGGATTCATTGCGAGGCCATTCGTT
CCATTATCTTGCGGTAACGCGCCCTGCCAACACGTGCACTTACATTTTCT
AACATGTACATCTTTGCTTGTTCTCTCCACAGCTTTTACTTCTCGTTCCT
CTTTGCAAGTCTAGCATGTTCAGGACTCTCACCCACTCAGCACTCCTTGT
GCTCGTGCTCATGGCACTGGCCTCCGTGAGGgccttcctgccttctccaT
GCCGCATGCCGCCCACCATGAAAGTTGGTAAATCATCCTCGACGGGTCGT
GGGAAGAGCATCGGCATCATCAACTCGATGCGTGAAAATATCGAGGGGGA
ACCCAACCCTACTCAGGTACGCAGACGGGGTTGGCAGGACGGATgcgccg
gggaagggagatagCGTAAAAAGAGattgaaagaaagaaagcgccCCATA
CCTCGTGTTATTCAAAACAATGCTTGGACGGTCGTGCTTGGAATGAAGCG
TGGAGACAGAAAGGGTTGTGTTCGAAAAAGAGGACACTGGAGGGAGATAC
AGTCAGACATGCTCTGAACCCCTTGGGCCCGGTTCAACAACATGCATCGC
ACttcgcttccttttctttccgcaGATCATGGTCTCGAACTTGCCTTTTG
ACACCTCTaccgaggagctggaggcctttgcctcccagGCGGGGCAGGTC
GTGAACGTGAAGATCATTCTGGACCGAGAGACCGGGCGCAGCAAAGGCTA
CGGCTTCGTCCTTTTCACCGAGCCGCTCTCCGCCACCTACGCGCTGGAAC
GCTTGGATGGGATGGAGCTGGGAGGCCGGCCCTTGAAGATCCGCCCTGCA
ATCCGAAAGACTTACCCCAATAcccggggaggcggggggtaCGGTGGGGA
CAACAACTACTAAGCGGGAGGAgtgaggtggggaggagagagtgccgctt
gcagaaggagggcggatgTGTGCAGAGGAGTCGGCTGATGGCGCCTGGAG
CGTTTAAAGGGCAGGCGAAAACTGTATTCAGTTTGGGGTGAAAGAGACGA
TTCTTGTTTTGTTGTTTatgggtggcggaggaatgGGCTGTGAGAATGCC
AGGGGTCCGTCGGCAGCATGGAGGCATCGGGGGATGCGGCGAGGACTTAC
TTCTAGAATATTCCGGACCTTAGGAAGAGGCTCGGTGAGGTgactgggag
aggagggaaaagggggggagtcCGGCATTTAGACTCTGATTTAACGGTCG
AACCTTTCCACGAGGCCCatgggggagaaaagaacaGATGTACATTATGG
TCTCTCTGCCCGTGATGGTCACGTCCAGCCGCATGTCGTCGGAaacaaaa
aagaaggagaagagaggccgGGGGTGGtcgagccggaggaggaagggacg
gagggcagTAGACGAAGGGCCCCTAGGCGctcgagggaggcggtgatagg
cgtggaggagggcggaggggtggGATGGAGCGAATAAGCCGTggcagggg
agagaaggaaaagaatacACGGATATTATCCCTGACA

Coding sequence (CDS) from alignment at CM002469.1:217745..219481+

>rna6669 ID=rna6669|Name=rna6669|organism=Nannochloropsis gaditana|type=CDS|length=978bp|location=Sequence derived from alignment at CM002469.1:217745..219481+ (Nannochloropsis gaditana)
ATGTTCAGGACTCTCACCCACTCAGCACTCCTTGTGCTCGTGCTCATGGC
ACTGGCCTCCGTGAGGgccttcctgccttctccaTGCCGCATGCCGCCCA
CCATGAAAGTTGGTAAATCATCCTCGACGGGTCGTGGGAAGAGCATCGGC
ATCATCAACTCGATGCGTGAAAATATCGAGGGGGAACCCAACCCTACTCA
GATCATGGTCTCGAACTTGCCTTTTGACACCTCTaccgaggagctggagg
cctttgcctcccagGCGGGGCAGGTCGTGAACGTGAAGATCATTCTGGAC
CGAGAGACCGGGCGCAGCAAAGGCTACGGCTTCGTCCTTTTCACCGAGCC
GCTCTCCGCCACCTACGCGCTGGAACGCTTGGATGGGATGGAGCTGGGAG
GCCGGCCCTTGAAGATCCGCCCTGCAATCCGAAAGACTTACCCCAATAcc
cggggaggcggggggtaCGGTGGGGACAACAACTACTAAATGTTCAGGAC
TCTCACCCACTCAGCACTCCTTGTGCTCGTGCTCATGGCACTGGCCTCCG
TGAGGgccttcctgccttctccaTGCCGCATGCCGCCCACCATGAAAGTT
GGTAAATCATCCTCGACGGGTCGTGGGAAGAGCATCGGCATCATCAACTC
GATGCGTGAAAATATCGAGGGGGAACCCAACCCTACTCAGATCATGGTCT
CGAACTTGCCTTTTGACACCTCTaccgaggagctggaggcctttgcctcc
cagGCGGGGCAGGTCGTGAACGTGAAGATCATTCTGGACCGAGAGACCGG
GCGCAGCAAAGGCTACGGCTTCGTCCTTTTCACCGAGCCGCTCTCCGCCA
CCTACGCGCTGGAACGCTTGGATGGGATGGAGCTGGGAGGCCGGCCCTTG
AAGATCCGCCCTGCAATCCGAAAGACTTACCCCAATAcccggggaggcgg
ggggtaCGGTGGGGACAACAACTACTAA

Synonyms

Publications