rna6651, rna6651 (mRNA) Nannochloropsis gaditana

Overview
Namerna6651
Unique Namerna6651
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1292
Alignment locationCM002469.1:174908..176468 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100765g1.206.mrna
Orig protein idgnl|cribi|Naga_100765g1.206
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:174908..176468 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100765g1gene6429Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6651rna6651-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24037.1cds6635Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6651 ID=rna6651|Name=rna6651|organism=Nannochloropsis gaditana|type=mRNA|length=1292bp
GCGTGGTATACGAGTACCCACCTCCCCCTGCTACAAAGCCTGAGTTGAGC
GAGCGAGGCGAGAACGAGACGCGACACATTTGGTTAATATTTTTCTTTGC
GAGGTCCGTATTGCACGCCTCCACCATTGTGTTCCGTCGGCTGCTGATGC
TTACCACGCCTTTAATCGATCACTTCCCCTTCACAGCGAGGTCGCCCCAT
CAATGGACATTTTCCTGCCACGACGAGAAAAGGCACGACGCATTACCTCC
CCCCTCCACCGGCAACAACCAAGCGGGATCGTGACTTGCGGTCAACCACT
GCATCGAGAATGACACACTTCTCCCCTGTCTAAAACACTCCAAAATCTTA
CATATCATGACGGCAGAGCTGCCTCTCCGGTACCAGCCTCACCAACAGGA
CGGCTCGAGGACGGGACTTGTAGGAAAAAAATCCAAAGAGAGCAACTCGA
CGGGACATCAGATAGCTGGCCTGGCCGATCTGGGCAATGCCTTCCTTGCA
TCATTTATTGTCCCTTTCGCACCCTCCTTTCTGGATCGACGCCTGAATGC
GGGGTTTTTCTATGCCTCGGACACGCCATATTGGTGGGCCTTGACACTGC
TCAGCTTTTGGGGGGGACAATGGGGGGCTCGCTGGGTGAGGTGGAGGTTG
GGGATGACGCGCCCGCTTTCCCCACGATCGAAGGCCAGGGTGTATGGATG
GTTGTTGATCTTGGTGCTGGCGGTGCTAGGGACCGGCTGGGTGACTCGCG
TGGAGTATCTGCTGGGAGTGCGTGCGTGGACCGGCTTCGCTTCCGTGCTG
GTCTGGGGACACGCGGCAGAGAGGACGACGTGGGGGAGGAAAGACGGGGA
CCGGCGGGGAGGAGGCCGGTGCGGATGGAGAAGACAGCATACGGGGGACC
CTTCCAGCGCCAGGGTCCGTGTGGGGGAGGAAATGGAAGCTTTTCTGGGC
CCAATGGACGCCTTAGGCTGGGTCGTTGGGGCGAGCGTCGGCGCGCTCAC
GTTCTCGAGGCGGTCCTGGGTGACGGTGGGCGGATACCCCGCCTGGGCAT
CCTCAGTGACGGCGGTCGTCTGCGTGACGTTGGTCTCGTGCCTGGTGCTC
CGCAGAATGGAGAAGGCCGGGGCGTGGCGGAGGGCGGGAGGGAGGGGGGA
CAGTAAGGATGGGTGGATGCGCTCTGGCAGGCAGGAGCGCAAGGACTCGG
GAGGGCCCGAAGTTGGGAGGGAGTCCTTCACGCCGTCCGTCCCGTCCCCA
GGGGGGGGAACTAGACGGTTCCAGGCCGGCCGTCCCTCCCCC
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protein sequence of rna6651

>rna6651-protein ID=rna6651-protein|Name=rna6651|organism=Nannochloropsis gaditana|type=polypeptide|length=435bp
NKFIYDRARGAWVLREEEKEGDEGEVEDEEEEEEEEGVGGALGGRQLKGG
HGTKSGTREDKDEEGRAEGEEEEPLLPKTEEDGLVLAIQAAHIAEHLARR
KTTCPTSWVPHAPNPSSHPCHTSPHIFAPKPPSVDPSGRGPFTRPHPPRS
DADSLGDVGEPAPASAPSLLLVLQTTALYLGTSLLHFSFLPMVPVWLASP
YPEGGLGLTPLSLGLLLSLGPTLLFFLHAYPSPSLLRVPNARPLRTFRLA
TVVFVASTVLICGLHPRMSSKPSSSPSNTITAGARYIFTGIFYLVLLTAV
YASLSAARAATTTLLRLVSPLPSGPFSILFTTFASSIPAVAPLLGAWTLS
WSLRAGLHYPMDARLMWHVSALSLVGLYILSLQFQLVVTGDFGSVRMDDS
SNGLSGNAFIFLQKKKKRKTKRKAEGNTERAKHLV
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mRNA from alignment at CM002469.1:174908..176468+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6651 ID=rna6651|Name=rna6651|organism=Nannochloropsis gaditana|type=mRNA|length=1561bp|location=Sequence derived from alignment at CM002469.1:174908..176468+ (Nannochloropsis gaditana)
AACAAGTTCATTTACGACCGAGCGCGAGGCGCCTGGGTGcttcgggagga
ggaaaaagagggagacgaaggggaggtagaagacgaggaggaggaggagg
aggaggagggggtggggggtgcTCTGGGCGGAAGGCAGCTcaagggcggg
cacggaACCAAGAGTGGGACTAGAGaagacaaggacgaggaagggcgggc
ggagggggaggaggaagagccgctGTTGCCCaagaccgaggaggacgggt
tAGTCTTGGCCATTCAAGCGGCCCATATTGCGGAGCACCTCGCACGTCGC
AAGACCACATGCCCCACATCCTGGGTTCCCCACGCCCCCAACCCCTCGTC
TCACCCATGTCACACGTCTCCTCAcattttcgcgccaaaaccTCCGTCTG
TCGACCCCTCTGGGCGTGGACCCTTCACTCGGCCCCATCCCCCGCGCTCG
GACGCGGACAGCCTCGGAGACGTCGGCGAgcctgcccctgcctcggCGCC
TTCCCTacttcttgtcctccagaCCACCGCGCTTTATCTGGGCACGTCCC
TTCTCcacttctctttccttcccatggTCCCTGTGTGGCTCGCCTCCCCG
TACccggagggcgggctcggactcacccccctctccctgggccttctcct
ctccttgggcCCCAcgctccttttcttcctccacgcctatccttctccct
ctctcctccgggtaccCAATGCCCGTCCTCTCCGCACCTTCCGCCTCGCG
ACCGTCGTCTTTGTcgcctccaccgtcctcATCTGCGGGCTTCACCCACG
CATGTCCTCCaaaccttcctcttcaccctccaaCACCATCACAGCTGGAG
CCAGGTACATCTTTACCGGGATATTTTACCTTGTACTCCTCACGGCGGTC
TACGCGTCCCTCTCTGCCGCACGCGCAGCCACaaccaccctcctccgcct
cgtgtCGCCTCTCCCATCCGGGCCTTTTTCCATTCTCTTTACCACTTttg
cctcttccatcccagCTGTGGCCCCCCTTCTAGGTGCATGGACGTTGTCT
TGGTCCCTGAGAGCCGGTCTTCATTATCCGATGGATGCACGATTGATGTG
GCACGTAAGCGCATTAAGCTTAGTGGGTCTCTACATCCTGAGCCTTCAAT
TTCAGCTGGTCGTCACTGGAGACTTCGGGTCAGTGAGGATGGATGATAGC
AGCAACGGACTCAGCGGGAATGCCTTCATATTTTtacagaagaagaagaa
gagaaaaacgaaaaggaaggcagaaggGAACACCGAGCGCGCAAAGCATT
TAGTGTGATAGAACGGGGGAACAGGGGATTTGTAAATCTCGGATTATTGT
GCCCGCCGTCAATGACGGTGAGCTGTATTTCTATTTCCATAGCTTGGTAG
ATTTAAATTAAAGGATGATTCAGAGAAATAGCGTCGTGAATACGTTTCGA
AGGGCCTGGAcacatggagggaggaggtagagggggcgaagaaaaCGTAG
AACGTGGAGGCCAGAGCATCGACACCAAACACAAAGCACCAATCCCGTCG
GCAGAATAACT
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Coding sequence (CDS) from alignment at CM002469.1:174908..176468+

>rna6651 ID=rna6651|Name=rna6651|organism=Nannochloropsis gaditana|type=CDS|length=1308bp|location=Sequence derived from alignment at CM002469.1:174908..176468+ (Nannochloropsis gaditana)
AACAAGTTCATTTACGACCGAGCGCGAGGCGCCTGGGTGcttcgggagga
ggaaaaagagggagacgaaggggaggtagaagacgaggaggaggaggagg
aggaggagggggtggggggtgcTCTGGGCGGAAGGCAGCTcaagggcggg
cacggaACCAAGAGTGGGACTAGAGaagacaaggacgaggaagggcgggc
ggagggggaggaggaagagccgctGTTGCCCaagaccgaggaggacgggt
tAGTCTTGGCCATTCAAGCGGCCCATATTGCGGAGCACCTCGCACGTCGC
AAGACCACATGCCCCACATCCTGGGTTCCCCACGCCCCCAACCCCTCGTC
TCACCCATGTCACACGTCTCCTCAcattttcgcgccaaaaccTCCGTCTG
TCGACCCCTCTGGGCGTGGACCCTTCACTCGGCCCCATCCCCCGCGCTCG
GACGCGGACAGCCTCGGAGACGTCGGCGAgcctgcccctgcctcggCGCC
TTCCCTacttcttgtcctccagaCCACCGCGCTTTATCTGGGCACGTCCC
TTCTCcacttctctttccttcccatggTCCCTGTGTGGCTCGCCTCCCCG
TACccggagggcgggctcggactcacccccctctccctgggccttctcct
ctccttgggcCCCAcgctccttttcttcctccacgcctatccttctccct
ctctcctccgggtaccCAATGCCCGTCCTCTCCGCACCTTCCGCCTCGCG
ACCGTCGTCTTTGTcgcctccaccgtcctcATCTGCGGGCTTCACCCACG
CATGTCCTCCaaaccttcctcttcaccctccaaCACCATCACAGCTGGAG
CCAGGTACATCTTTACCGGGATATTTTACCTTGTACTCCTCACGGCGGTC
TACGCGTCCCTCTCTGCCGCACGCGCAGCCACaaccaccctcctccgcct
cgtgtCGCCTCTCCCATCCGGGCCTTTTTCCATTCTCTTTACCACTTttg
cctcttccatcccagCTGTGGCCCCCCTTCTAGGTGCATGGACGTTGTCT
TGGTCCCTGAGAGCCGGTCTTCATTATCCGATGGATGCACGATTGATGTG
GCACGTAAGCGCATTAAGCTTAGTGGGTCTCTACATCCTGAGCCTTCAAT
TTCAGCTGGTCGTCACTGGAGACTTCGGGTCAGTGAGGATGGATGATAGC
AGCAACGGACTCAGCGGGAATGCCTTCATATTTTtacagaagaagaagaa
gagaaaaacgaaaaggaaggcagaaggGAACACCGAGCGCGCAAAGCATT
TAGTGTGA
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Synonyms
Publications