|
|
Properties
| Property Name | Value |
|---|
| Product | epsilon 1 |
| Orig transcript id | gnl|cribi|Naga_100280g8.2297.mrna |
| Orig protein id | gnl|cribi|Naga_100280g8.2297 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002469.1 | supercontig | CM002469.1:166168..168145 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna6646 ID=rna6646|Name=rna6646|organism=Nannochloropsis gaditana|type=mRNA|length=3657bp
ATAGGGCCAGGGTCTTGTGGACGCGCAAGGTGCGTCGAAAGCCGTGTGCA
GTCCTTCCTGAGCCCATCCCATCTTTCCTCCTGCGCCGTTTTCCTCTGTA
GAGCGAGGCCAAAGTCGCTGTATCCCTGGAAATTTCTGTGCAAGTCATGG
ATAATCTTCCGTTAGATTTGTTGTCCCGTACGCTGTCCTTTCTTGACGGG
GAGTCCTTGCTCACGTGCGCGTGCGTGTGCAAGGACTTTTGCCAATTGAC
AGACCATCGTTCATACTGGGAGAATGCAGCTTGGCGACTTTTCCCCCATT
TGAAGGAAACCTACGACATCATGCCATACAACGGAGACTGGAAAGCTTTG
TTTCAAGACCGGAATCGGCGCAATCGGTCCGCTGTGTTTGAATGGACGGT
CACGGACTTCCTCTCCAACCCTGAGCGGAGATATTCCCCTTCCTTCCGCG
TCGAGGACTACACCTTCAAAGTGATCGTCGACCCTGTTGGGAACCCGAAC
GTTTATTTTCTCGAGCCTGGTGTGTCAGTCTACCTGGCTTGTTCACCGGC
AGCTCCTCTTCCGCCGTCCACCGCTGCGACTGCCGCACTGGCTGCCTCCG
TAGCCGCCGGCCTACCCATCCCTCCCGTCGCCGAGGCTCTGGTTCAAAAC
CCCGGCTTTTCGGAAGCCGTAGCCGCGGCTACGGCTGCTGCCGCGACAGG
GATGCCCACGGGCCTGAATCCGAACCATCACATGGAGGCGGCTGCGATGG
CGGCGCTGAGTGGCTATGGTCATGGGGGGGGGATTGGGTCTCCTCCGGGG
GACTGGGAGTGTTGCTGTGCCTTTTCTCTCACTGCTTGCAACCAGCAACG
CAAAGGTCGGAACGTGACCTGGCATTCCTCCATGCTTAACGATCGTTTCC
ACAAGAACCGGAAGAATTGGGGAGTCCATTCCCTCTTGCCGGTGACTAAA
CTTAAAGACCCAGCCTCCGGATTCGTGGTGGACGACGCACTCAAGCTCAA
GGTCCGCCTCCGCCTCTTGTACCTGACCGTAAAAGTGGTGCGGAACGCCC
ACCTGGCCGCCCACGAAGGCTTTGGGATCATGGACACGGGGGCTGAGGCC
CCGGCCGGGGCGGACGACAGCCTCACGTACGAGCTTTTCCATTGCACGAC
CTTGACGGCCTTCAAGGAGATGTTGGCACGTGACTTGGGCATGCCTTCCC
CGGAGCATTTCCGGCTCTGGGTCTTTACCCAGCCATGGCCTGACACCATC
CTGTGCCCGCGGGAGATTCTGACGAACGCAGGGGGCAGCAGCAACAGCAG
CAGCAGCAACGGGCAACCAACCCCAACGACCGCGCCCCCGGTGGCACAAA
ACCAAAACCCCCACCAGCTCAACCCCAACGCCGCGGTGACTCCTCCGCAG
CACACGCCGTTAGCTCCCTTGGCACCCGTCCCTCCCACGGTGCCCGCCCC
TCCAGCCGCCCCCCTGGCCGACGAAGATGCTTCCGCTGTCACCCTCTTCT
CCCTCCTTCAACTGCACATGGACGGTCTCGGCGTCGCCAGGGTCTGGGCG
GAATGCGCGGAGGATGGAGGCTTTGCCTCCACACCAGCCTGGACCAGTGG
CACGGCGGCCGTGGAGGAGATGGATGAGGAAGAGAGGGACGCGCCAGAGC
TCTCCGTCCTGATGGCCACCAGCCAAGATGAAGGGCAAGGCAGCCAGCCG
GACAAGGGAGAGAACTCGAGAGGGGAAGCTGACGGATGCCTACCCGATAT
ACCAGGACTGCACCAGTGTCAGGCCCATCAAACGCTCTCACCTGTGGCGT
TGATGCCGGACTCGCGTGACCTGTGCCACCAATCCCATGCGGCCCAATCA
GCGGCCGCCGCTACGGAGGATCCGGCCGCCCTGGCTGTCGTTCCCCCTTG
CCCCATGCCCTCCCCCAATATGCACGTGCTGGTCTTCCTCAAGTGGATGA
ACCCTGTCTCGGGTCGAATCGCCTACCTCTCCCACGCGGTGGTGACGCAC
CGCACCCTCCTGCGGCACATGTTCGTCCTGGTCGGGGGTCTTGTGCACAG
GCCTCCAGAGACCTTGGGCGCCCACATGGAAACCACGCCTGCCACGTGGC
AACGCTGTGGCCAAGGAATGCACCGGATGATTGCCTGTCCCCTTCCCGCG
CAACATCTGCGGGGGGTGGCCCGTCCTCGGGATAACAATAGGGAACGGCC
TGAGGAACAGGCGACTCTGCGGGACATCGGGGTCGAGAATGGACAAATTT
TGACCTTTTATGTGGAGGGCATGGAAGCTGTTGTGGAAGGAACCTACCGC
GGGTACCTGGAGGAGCTCTTTCACGAGGCCTGCGTCATGTACTACGGCCA
AGACAGCCTACAAGCCGCGGAGCGAGCGCGCTCCTTGATGTGTATGGACG
TGGAGGATGAGATGGTCGAGGAGGACTGTTCCCAGCAGTACGTGGGAAAA
AGCAGCAGTGCCGGCGATCAAAAAAACGAACGGATGGGAAAGACGGGTCC
ATCTCGGGGAAATACCAAGAAGGGGGTGACTGCCGCGGGAGCAACCACGG
AAGACCGAGAAGGCACGGCGGGGGCCCTTGCCTGTTTCCTTGCCCCGCCC
GCCTTGGCCAACGCCGCTTTATTTTCCTCCCGCCCTCGCGTCCGCCCACG
TCGAGCGTCTCCAAAGTACAGCACCTTGAAATTGGAGCAGGTCGTGAACC
TGTTTGAACGCTTTGGCTACCAATCGTTCCGCGTCCGCAACGTCTATTAC
CAACACAAGCACATGAATGCCAGACAAACGATGGACTACGTGATCCAAGG
CCGGCACTTGGGCTTCTGTTGCGACCGTTGTGGGGCGACGGACTTCACAG
GGCCTAGATACAAATGCTGCATGTGCTATGACTACGATTTGTGTGGGAGC
TGTCAAGAGCATCCGCAAGCGGCCGCACACAGGTACAAGTATGAGCATCG
CGGATGGCGCCGTGAAAACCAGTTCAGCGAGCACTCCAAGAACCACAGGA
TGCAAATGATTCTCCCCGTCCCCTACAATCTGCGAAGCTTGTCGTTGCAG
AGGTAGTCAAAAAATCGTGTCGGACACGAAGCGTGTTCGAGGTCGTTCAC
GTGACGCTCGTGGGGGGGCAGTTGGCGATTGACTCGTGGATTTAGGAATT
GGGGGTGCACCTTGTAATATTAGAAAAGTAGAGAATAGGACAACAAACCA
CTTCGTTAGCTAAGCATTTTGACTATCAACAGTCAAGAGCACTTCTTCGG
GTACCTGCCAGCGCTTGTTAGAAAGCAAGAAACACTGGAAGTTGGAGGAG
CACATTTTACATGGCACGCAGCAGGATGCAAGAAAGCAAGCAGCGGACGA
ATGTGCACGTTAGAGAGGTGTGTAAGGCGACCAGGTTGGTAATGCATTTT
AACGGACAAAAGACCACTTGGAAAAGAGAGGGTGGAAGATGAGGCGTCGA
GGGTTCAGGAAAAAGAGGATTTCGACAGGCTCTGCTACCTCTAGATCCTG
AAATCTTTGCGTGGGGGTCGTAGAGGGAGGAGAAAGTGAGAAGAAAGTTG
CCAGATACAAAGGTGAACAGAAAGAAAACATGTGTGTATGGAAAAAATCA
GGAATGCTGTGATTCCTGCCCGTGAATTCATGTGTTTCCGCATCCATTAG
GCAGAAG back to topprotein sequence of rna6646 >rna6646-protein ID=rna6646-protein|Name=rna6646|organism=Nannochloropsis gaditana|type=polypeptide|length=558bp
MNRFPGKMPREVITLQVGQAGNQIGRRFWEQALEEHCQPDEDDDHGELKF
TDSMSSFFHLHDNDDLICGTARKVRDRIVKPGALKARAVLVDMEEGPVTE
TLRGPLRGLFDSHQSLTDVSGAGNNFAHGHHCYGPQYGESVLEAVRQAAE
LCDSLQSFFLMHSLGGGTGSGLGTYILTLLEDDFPQVHRFVTAIFPSEDD
DVVTSPYNSVLALQQLTAHADCVLPVENQSLMTLAAPFPWVTRSGSTVAG
FHRPSTMDRLLAPPCPPVGLPKEGKMRPLPRPTPTAAPAPAAAALRGAAG
GLEQAAERPACGFDGMNDLVARLLLDLTASMRFGGELNVDLNEITTNLVP
YPRLHYLMSSLSLSSSTGTSRNNAQEWEPLGSAQAAASLHLRQICSKVFA
RENQLLRADPRQGSVLACALLFRGQELSLADVTENVKKLQREMNMASWNK
DGFKIGLCQATGSSSSPTSSGPPPPPSLLSLTNNSCVTSTFLRLLGRFQK
LYRRRAMVHHYAEYMDVTLLEEAREDLRGLIEEYHGVGARGKAVGRRVTG
CGAGSLVA back to topmRNA from alignment at CM002469.1:166168..168145- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >rna6646 ID=rna6646|Name=rna6646|organism=Nannochloropsis gaditana|type=mRNA|length=1978bp|location=Sequence derived from alignment at CM002469.1:166168..168145- (Nannochloropsis gaditana)
TCATCCAAAATTCATGCATCTTTTCCTGTTGTTTTTCGCTCACATGACAA
TTTTGTCATTGCATGAATAGATTTCCTGGGAAAATGCCTCGGGAAGTCAT
CACGCTGCAAGTGGGCCAGGCAGGGAACCAGATAGGTCGACGCTTTTGGG
AGCAGGCCCTTGAAGAACATTGCCAACCCGACGAGGACGATGACCACGGT
GAATTGAAATTTACGGACAGCATGTCTTCATTTTTTCATCTTCACGACAA
CGATGATTTGATATGTGGGACTGCTAGGAAAGTCCGGGATCGTATTGTCA
AACCTGGCGCTCTAAAAGCGCGGGCCGTATTAGTAGACATGGAGGAGGGC
CCGGTCACGGAGACCCTTCGAGGACCTTTACGAGGACTTTTTGACAGCCA
TCAATCATTAACAGACGTCTCAGGGGCGGGAAATAATTTTGCACACGGCC
ATCACTGTTATGGACCGCAATATGGGGAGAGTGTTTTGGAAGCTGTTCGT
CAGGCGGCAGAGCTGTGCGACTCACTGCAATCCTTTTTCCTGATGCATTC
TTTGGGAGGAGGAACTGGCTCTGGCCTCGGCACATACATACTGACATTGT
TGGAAGACGACTTTCCGCAAGTCCACCGTTTCGTAACGGCTATTTTTCCT
TCGGAGGATGACGACGTGGTCACCTCGCCCTATAACAGCGTCTTGGCTCT
GCAGCAACTAACGGCGCACGCGGACTGTGTTCTCCCCGTGGAAAATCAGT
CCTTGATGACCTTGGCCGCCCCCTTTCCATGGGTGACCAGATCCGGCAGC
ACGGTCGCGGGGTTTCACCGGCCGTCGACCATGGATCGGCTACTCGCGCC
TCCCTGCCCTCCGGTGGGATTGCCCAAGGAAGGAAAAATGCGGCCTCTGC
CGCGGCCCACACCAACGGCCGCACCGGCTCCAGCTGCAGCCGCTCTGCGG
GGGGCAGCCGGTGGATTGGAGCAGGCAGCCGAGCGGCCAGCGTGTGGTTT
CGATGGCATGAACGATTTGGTGGCCAGGCTGCTACTGGACCTGACGGCCT
CCATGCGGTTCGGCGGCGAGTTGAACGTGGATCTCAACGAGATCACCACC
AACCTCGTCCCCTACCCTCGGCTGCACTATCTCATGTCCAGCCTGAGCCT
GTCTTCGTCGACCGGTACTTCCCGCAACAATGCTCAGGAATGGGAACCGC
TGGGCAGTGCTCAAGCCGCAGCCTCTCTCCATTTGCGTCAAATCTGCTCG
AAAGTCTTCGCCCGGGAGAATCAGCTCTTGCGTGCCGATCCACGGCAAGG
GTCCGTCCTGGCGTGCGCCCTTCTCTTTCGGGGACAGGAGCTCTCCCTTG
CAGACGTGACAGAAAACGTCAAAAAACTGCAGCGGGAAATGAACATGGCG
TCGTGGAACAAGGACGGATTTAAAATCGGCCTCTGTCAAGCTACGGGCTC
TTCCTCCTCCCCAACGTCCTCTGGGCCTCCCCCTCCACCTTCCTTGCTTT
CTCTGACGAACAACAGCTGCGTGACTAGCACGTTCTTGCGTCTGCTCGGG
CGGTTTCAGAAGCTTTACCGACGCCGGGCGATGGTGCATCACTACGCCGA
ATATATGGACGTTACCCTTCTGGAGGAGGCGAGGGAGGACTTGCGCGGGC
TGATCGAGGAGTACCACGGGGTTGGAGCGAGAGGAAAAGCGGTAGGGAGG
AGGGTGACAGGCTGTGGGGCGGGCTCGCTTGTTGCTTGAGCCGGTGCTAA
GCAGGGGCTGGTGAGCAAAGTGAGAACATTTGGGACCTACCAGGCCGTAC
CGCGATCGGAAAATGGCGGACCTTTAAGGTCCTGCTACTTGAGAATATAT
AGTAACGTCAAGGCGACGCAAAAGTTGACGAAAAGGCGACGCAAAAGTAT
ATTTGAAGGGCAACACAATAACTTCTGCCTAATGGATGCGGAAACACATG
AATTCACGGGCAGGAATCACAGCATTCC back to topCoding sequence (CDS) from alignment at CM002469.1:166168..168145- >rna6646 ID=rna6646|Name=rna6646|organism=Nannochloropsis gaditana|type=CDS|length=1677bp|location=Sequence derived from alignment at CM002469.1:166168..168145- (Nannochloropsis gaditana)
ATGAATAGATTTCCTGGGAAAATGCCTCGGGAAGTCATCACGCTGCAAGT
GGGCCAGGCAGGGAACCAGATAGGTCGACGCTTTTGGGAGCAGGCCCTTG
AAGAACATTGCCAACCCGACGAGGACGATGACCACGGTGAATTGAAATTT
ACGGACAGCATGTCTTCATTTTTTCATCTTCACGACAACGATGATTTGAT
ATGTGGGACTGCTAGGAAAGTCCGGGATCGTATTGTCAAACCTGGCGCTC
TAAAAGCGCGGGCCGTATTAGTAGACATGGAGGAGGGCCCGGTCACGGAG
ACCCTTCGAGGACCTTTACGAGGACTTTTTGACAGCCATCAATCATTAAC
AGACGTCTCAGGGGCGGGAAATAATTTTGCACACGGCCATCACTGTTATG
GACCGCAATATGGGGAGAGTGTTTTGGAAGCTGTTCGTCAGGCGGCAGAG
CTGTGCGACTCACTGCAATCCTTTTTCCTGATGCATTCTTTGGGAGGAGG
AACTGGCTCTGGCCTCGGCACATACATACTGACATTGTTGGAAGACGACT
TTCCGCAAGTCCACCGTTTCGTAACGGCTATTTTTCCTTCGGAGGATGAC
GACGTGGTCACCTCGCCCTATAACAGCGTCTTGGCTCTGCAGCAACTAAC
GGCGCACGCGGACTGTGTTCTCCCCGTGGAAAATCAGTCCTTGATGACCT
TGGCCGCCCCCTTTCCATGGGTGACCAGATCCGGCAGCACGGTCGCGGGG
TTTCACCGGCCGTCGACCATGGATCGGCTACTCGCGCCTCCCTGCCCTCC
GGTGGGATTGCCCAAGGAAGGAAAAATGCGGCCTCTGCCGCGGCCCACAC
CAACGGCCGCACCGGCTCCAGCTGCAGCCGCTCTGCGGGGGGCAGCCGGT
GGATTGGAGCAGGCAGCCGAGCGGCCAGCGTGTGGTTTCGATGGCATGAA
CGATTTGGTGGCCAGGCTGCTACTGGACCTGACGGCCTCCATGCGGTTCG
GCGGCGAGTTGAACGTGGATCTCAACGAGATCACCACCAACCTCGTCCCC
TACCCTCGGCTGCACTATCTCATGTCCAGCCTGAGCCTGTCTTCGTCGAC
CGGTACTTCCCGCAACAATGCTCAGGAATGGGAACCGCTGGGCAGTGCTC
AAGCCGCAGCCTCTCTCCATTTGCGTCAAATCTGCTCGAAAGTCTTCGCC
CGGGAGAATCAGCTCTTGCGTGCCGATCCACGGCAAGGGTCCGTCCTGGC
GTGCGCCCTTCTCTTTCGGGGACAGGAGCTCTCCCTTGCAGACGTGACAG
AAAACGTCAAAAAACTGCAGCGGGAAATGAACATGGCGTCGTGGAACAAG
GACGGATTTAAAATCGGCCTCTGTCAAGCTACGGGCTCTTCCTCCTCCCC
AACGTCCTCTGGGCCTCCCCCTCCACCTTCCTTGCTTTCTCTGACGAACA
ACAGCTGCGTGACTAGCACGTTCTTGCGTCTGCTCGGGCGGTTTCAGAAG
CTTTACCGACGCCGGGCGATGGTGCATCACTACGCCGAATATATGGACGT
TACCCTTCTGGAGGAGGCGAGGGAGGACTTGCGCGGGCTGATCGAGGAGT
ACCACGGGGTTGGAGCGAGAGGAAAAGCGGTAGGGAGGAGGGTGACAGGC
TGTGGGGCGGGCTCGCTTGTTGCTTGA back to top
|