rna6644, rna6644 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6644
Unique Name	rna6644
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1544
Alignment location	CM002469.1:159800..161511 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100280g6.2293.mrna
Orig protein id	gnl\|cribi\|Naga_100280g6.2293
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002469.1	supercontig	CM002469.1:159800..161511 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100280g6	gene6422	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6644	rna6644-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24044.1	cds6628	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002469.1:159800..161511+
coding sequence from alignment at CM002469.1:159800..161511+

mRNA sequence

>rna6644 ID=rna6644|Name=rna6644|organism=Nannochloropsis gaditana|type=mRNA|length=1544bp
CGACAAACTCCCTTCCGCCGAGAAGGAAAAAAATCCCGCCCCATTGCTAA
ACCCAAACTAATTATATTATTTCTTACATTGATCAGGTTGGAAATCGAGT
TTCTCACGGACTTGTTTAACAGCGTCCCTGTTGACAAGGGTTAAGATAAG
CCCTTCGGCCCATATCGAGCTCCTCGCACTCCAAGGAAGTCGGCCTACCA
CCTCCCTTGCCGCCTCAATCGAGCAACTTAGACGTAGCCTTGTAGCTTTC
ATGTCAGAGCTATCTGATAATGATGTGTTTCGATGTCATCCCTCCTTGTC
AATCAAATCTATCGCATGGCTTTGCTTTGTATTGATTGCTCGCAGTGCTT
CCATTGAGCAAGAAAATGTCCTGTGTCCAAGTCTTCGCTCGGGGCCGACT
CTGTACTCTTCATCTGACATTTTTTCGACGGACTTCACAGAGCAAAATCA
AGTTCAATCGTTTTTGAGCGAAAATTATGGCCGCGTGAACACTGATGGGG
TCTTGGCCTGCCGACGCTCCGATCACTTGCTCTACAATACATCGATGAGC
GGCGCAGGTTTGGAGACCGATGTGCGAGGTTTACGCATTGTAATGGACAA
CAACGGGGGGGCAGTATGCGATCATAATTCAGAGATAGCTACGGGCCACC
TGTTAACCAGATTTTACCTGCAAGAAGGGCGGATCGACCTGACAGCACGT
ATGGGATACGGGCCTGACGCCGCTCCAAGATATCATAGCGAAGACAGTTT
CTCATGCTTAGGTTTGTATGTGCATCAATCTGTATCCCAACATGGCTATC
GAAACGAAATCTCGATGTGCGTGAGTTCCAAAGACCCAAGCACTGTTCGC
ATGGGGGTGTGGAATGGATCCCCTGCCGATCAAGAGGAGGCCAGGCAGGC
CAAGACGTCCATGGATTTGTCCCAAGCCTTCCACACCTACAGCATCGAGT
GGACTGCGAGCCGCGTGCGTTTTTGGCTCGACGACTTGAAGCTCTGGGAC
ATGCCGGGGCAACGATTTTGTGCGGGTGTACACGCGGCGAAAATCGACGC
CGGGATGAGCCAAGGGCGGCGGCTACCTTACGAGCCCATGTCTGTACGGA
TTATTTTAAGGCCGTTGGGGATCAGATACAAAGCAACGACATACATGGAT
GCCACAAAATTTTCCTACTTCCCCCTGGTCCAGGCAGAGGAGGAGTCAGA
GCCGGTGTTCCACGTGTCGGCTGGGACCTCTTTGACAACGGAAGGGTTGG
GGAAGGCGCGGGGCCTGGGAAATTTGTGGCAGCTCCTCAGCATGTGTGTA
ATTATTGTGTATTTCATTTGAAAGCATTGGCCGATGTACACGGGCACGGC
CTTTGTAAATTATTGGACGCGGGTGCCGCTGCTCGTGAGGTTCGCTTGCA
TGATTCATTAAGCTCATATATTTTCACGGGAATACCAGGCGACGACATCA
AAGAAAAATAATAGGGCATGGTATCTGCATTCAGGCATGCACAGAACAGT
ACGACTTCCAGAAGGCAACATGTACCCTAACAGCATCGCTTTCA

protein sequence of rna6644

>rna6644-protein ID=rna6644-protein|Name=rna6644|organism=Nannochloropsis gaditana|type=polypeptide|length=445bp
MEQSNSRTRIVEVRYDDLLASKDLSREIEKVKGRFTGGTYIKYYDMRKGP
LLRALPVTLVVVLSMCSDTALTLNFDDDLPHQAFGEHGMGLLTVSGVPGL
SEKRRSILHLAYAFASLPSTVRAKYEHSLSSYSFGWSHGKECLQEGRPDL
LKGSYYANPLHDTPCSDQNLIEKYPAFLHPNIWPTADLPALEPAFKDMGG
LIVEVGALVARQCDSYVSRMCPAYPPNRLEKIVRESRVCKARLLHYFPII
PEGKGPDGAARGWEGTGEAWAGASEWCGWHNDHGSLTGLTSALYVDEEGE
EVDFSDCFGKGVHGGLEKEEGGLFVLSRNGQVVKVNIPPDHLAFQIGETA
QIHSGGLLKATPHAVKGTTLAKRRLSRETFAVFMEPEMDESMTMPAGRSR
EDVTQKIGDRIHEKGAHVHLPSLDSRWEPGMSFADFTAKTLASYY

mRNA from alignment at CM002469.1:159800..161511+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6644 ID=rna6644|Name=rna6644|organism=Nannochloropsis gaditana|type=mRNA|length=1712bp|location=Sequence derived from alignment at CM002469.1:159800..161511+ (Nannochloropsis gaditana)
CGAAGGGCCGCTGATTTATGAACGACCTTGACGCCTCATGTACGTTCTCT
GATCAATGCTGTATGATATACAGATGCTTTATTTGAGTCTTTTGAGAAAC
GAGGGTGAAAGAGGGTAACCCAGACTGCCAATCTAACTTGGTCCCTGAAG
CCTTCAAGATGGAGCAGAGGTAAGAACGAAGCTCGATCGAAGAAGTCACA
ACAGACATGACCTCACTTTTTTCATCATAACAACTCGATGACAGCAACTC
ACGTACAAGAATTGTAGAGGTCCGATACGATGATTTGCTGGCCAGCAAGG
ACTTGTCGAGGGAGATTGAGAAGGTGAAGGGGAGGTTCACGGGAGGGACA
TATATAAAGTACTACGACATGAGAAAAGGTCCACTCCTGAGAGCTTTGCC
CGTCACTTTAGTCGTGGTCCTTTCCATGTGTTCTGACACGGCGCTCACTT
TAAATTTTGATGATGACCTACCTCACCAGGCTTTCGGAGAGCACGGTATG
GGCCTGTTGACAGTCTCGGGAGTCCCGGGGCTCTCTGAAAAGCGCCGTTC
CATCCTTCATCTAGCTTACGCGTTCGCCTCTCTGCCCTCGACTGTCCGGG
CGAAATACGAACATTCGTTGAGTTCTTATTCCTTCGGTTGGAGCCATGGG
AAGGAATGTTTGCAGGAGGGACGGCCTGACTTGCTGAAGGGTTCATATTA
CGCCAACCCCTTGCACGACACCCCCTGCTCCGACCAGAACCTCATCGAGA
AATACCCAGCGTTCCTCCATCCCAACATCTGGCCCACTGCCGATCTTCCC
GCCTTAGAGCCGGCCTTTAAAGACATGGGAGGGTTGATCGTGGAGGTCGG
GGCGCTGGTGGCACGGCAATGCGATTCCTACGTCTCTAGGATGTGCCCTG
CGTACCCCCCCAACAGACTGGAGAAGATCGTGAGGGAGTCAAGGGTGTGC
AAAGCCCGGCTCCTGCATTATTTCCCCATTATtccggaaggaaagggccC
TGATGGTGCAGCtaggggatgggaagggacggGAGAGGCTTGGGCGGGTG
CCAGCGAATGGTGTGGCTGGCACAATGACCACGGTTCACTTACGGGGCTG
ACGTCGGCACTCTAtgtggacgaagaaggggaggaagttgaTTTTAGCGA
TTGCTTTGGCAAGGGTGTGCATGGAGGGttagaaaaggaggaggggggcc
tcTTCGTGCTCAGCCGGAACGGGCAGGTGGTGAAAGTCAACATCCCCCCC
GACCATCTGGCCTTCCAAATCGGCGAGACGGCCCAGATTCACTCCGGAGG
CTTGTTAAAAGCTACTCCACACGCGGTCAAAGGGACGACGTTGGCCAAGC
GAAGGCTCAGTCGAGAGACGTTTGCGGTGTTCATGGAGCCGGAGATGGAC
GAGTCCATGACTATGCCCGCAGGTCGATCGCGCGAAGATGTCACCCAAAA
AATCGGTGATAGGATTCACGAGAAAGGGGCGCATGTGCATCTGCCCTCTT
TGGACAGTCGATGGGAGCCAGGCATGTCTTTTGCCGATTTTACGGCCAAG
ACACTCGCGAGCTACTATTGATTGTATGCTACCTTTCAAAAATTAACTAA
GGAGCCGAACAATCTCTTTATGAACGACAGCTCCTTAGTTACTTTTTACA
TTTATTCTTGTGCCACATGCTATTGCAGCCGACCTGCTACGTGCCTAATC
GCGCACATGGGA

Coding sequence (CDS) from alignment at CM002469.1:159800..161511+

>rna6644 ID=rna6644|Name=rna6644|organism=Nannochloropsis gaditana|type=CDS|length=2676bp|location=Sequence derived from alignment at CM002469.1:159800..161511+ (Nannochloropsis gaditana)
ATGGAGCAGAGCAACTCACGTACAAGAATTGTAGAGGTCCGATACGATGA
TTTGCTGGCCAGCAAGGACTTGTCGAGGGAGATTGAGAAGGTGAAGGGGA
GGTTCACGGGAGGGACATATATAAAGTACTACGACATGAGAAAAGGTCCA
CTCCTGAGAGCTTTGCCCGTCACTTTAGTCGTGGTCCTTTCCATGTGTTC
TGACACGGCGCTCACTTTAAATTTTGATGATGACCTACCTCACCAGGCTT
TCGGAGAGCACGGTATGGGCCTGTTGACAGTCTCGGGAGTCCCGGGGCTC
TCTGAAAAGCGCCGTTCCATCCTTCATCTAGCTTACGCGTTCGCCTCTCT
GCCCTCGACTGTCCGGGCGAAATACGAACATTCGTTGAGTTCTTATTCCT
TCGGTTGGAGCCATGGGAAGGAATGTTTGCAGGAGGGACGGCCTGACTTG
CTGAAGGGTTCATATTACGCCAACCCCTTGCACGACACCCCCTGCTCCGA
CCAGAACCTCATCGAGAAATACCCAGCGTTCCTCCATCCCAACATCTGGC
CCACTGCCGATCTTCCCGCCTTAGAGCCGGCCTTTAAAGACATGGGAGGG
TTGATCGTGGAGGTCGGGGCGCTGGTGGCACGGCAATGCGATTCCTACGT
CTCTAGGATGTGCCCTGCGTACCCCCCCAACAGACTGGAGAAGATCGTGA
GGGAGTCAAGGGTGTGCAAAGCCCGGCTCCTGCATTATTTCCCCATTATt
ccggaaggaaagggccCTGATGGTGCAGCtaggggatgggaagggacggG
AGAGGCTTGGGCGGGTGCCAGCGAATGGTGTGGCTGGCACAATGACCACG
GTTCACTTACGGGGCTGACGTCGGCACTCTAtgtggacgaagaaggggag
gaagttgaTTTTAGCGATTGCTTTGGCAAGGGTGTGCATGGAGGGttaga
aaaggaggaggggggcctcTTCGTGCTCAGCCGGAACGGGCAGGTGGTGA
AAGTCAACATCCCCCCCGACCATCTGGCCTTCCAAATCGGCGAGACGGCC
CAGATTCACTCCGGAGGCTTGTTAAAAGCTACTCCACACGCGGTCAAAGG
GACGACGTTGGCCAAGCGAAGGCTCAGTCGAGAGACGTTTGCGGTGTTCA
TGGAGCCGGAGATGGACGAGTCCATGACTATGCCCGCAGGTCGATCGCGC
GAAGATGTCACCCAAAAAATCGGTGATAGGATTCACGAGAAAGGGGCGCA
TGTGCATCTGCCCTCTTTGGACAGTCGATGGGAGCCAGGCATGTCTTTTG
CCGATTTTACGGCCAAGACACTCGCGAGCTACTATTGAATGGAGCAGAGC
AACTCACGTACAAGAATTGTAGAGGTCCGATACGATGATTTGCTGGCCAG
CAAGGACTTGTCGAGGGAGATTGAGAAGGTGAAGGGGAGGTTCACGGGAG
GGACATATATAAAGTACTACGACATGAGAAAAGGTCCACTCCTGAGAGCT
TTGCCCGTCACTTTAGTCGTGGTCCTTTCCATGTGTTCTGACACGGCGCT
CACTTTAAATTTTGATGATGACCTACCTCACCAGGCTTTCGGAGAGCACG
GTATGGGCCTGTTGACAGTCTCGGGAGTCCCGGGGCTCTCTGAAAAGCGC
CGTTCCATCCTTCATCTAGCTTACGCGTTCGCCTCTCTGCCCTCGACTGT
CCGGGCGAAATACGAACATTCGTTGAGTTCTTATTCCTTCGGTTGGAGCC
ATGGGAAGGAATGTTTGCAGGAGGGACGGCCTGACTTGCTGAAGGGTTCA
TATTACGCCAACCCCTTGCACGACACCCCCTGCTCCGACCAGAACCTCAT
CGAGAAATACCCAGCGTTCCTCCATCCCAACATCTGGCCCACTGCCGATC
TTCCCGCCTTAGAGCCGGCCTTTAAAGACATGGGAGGGTTGATCGTGGAG
GTCGGGGCGCTGGTGGCACGGCAATGCGATTCCTACGTCTCTAGGATGTG
CCCTGCGTACCCCCCCAACAGACTGGAGAAGATCGTGAGGGAGTCAAGGG
TGTGCAAAGCCCGGCTCCTGCATTATTTCCCCATTATtccggaaggaaag
ggccCTGATGGTGCAGCtaggggatgggaagggacggGAGAGGCTTGGGC
GGGTGCCAGCGAATGGTGTGGCTGGCACAATGACCACGGTTCACTTACGG
GGCTGACGTCGGCACTCTAtgtggacgaagaaggggaggaagttgaTTTT
AGCGATTGCTTTGGCAAGGGTGTGCATGGAGGGttagaaaaggaggaggg
gggcctcTTCGTGCTCAGCCGGAACGGGCAGGTGGTGAAAGTCAACATCC
CCCCCGACCATCTGGCCTTCCAAATCGGCGAGACGGCCCAGATTCACTCC
GGAGGCTTGTTAAAAGCTACTCCACACGCGGTCAAAGGGACGACGTTGGC
CAAGCGAAGGCTCAGTCGAGAGACGTTTGCGGTGTTCATGGAGCCGGAGA
TGGACGAGTCCATGACTATGCCCGCAGGTCGATCGCGCGAAGATGTCACC
CAAAAAATCGGTGATAGGATTCACGAGAAAGGGGCGCATGTGCATCTGCC
CTCTTTGGACAGTCGATGGGAGCCAGGCATGTCTTTTGCCGATTTTACGG
CCAAGACACTCGCGAGCTACTATTGA

Synonyms

Publications