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Properties
| Property Name | Value |
|---|
| Product | Prolyl 4-hydroxylase, alpha subunit |
| Orig transcript id | gnl|cribi|Naga_100063g19.3888.mrna |
| Orig protein id | gnl|cribi|Naga_100063g19.3888 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002469.1 | supercontig | CM002469.1:129300..131778 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna6632 ID=rna6632|Name=rna6632|organism=Nannochloropsis gaditana|type=mRNA|length=1512bp
CTCGCGTTCTTCACTGCGCCTCTCTCTTTGCCGATTTAAGACAGGTAGAA
CTGGCTCATCAAAGAATAGAATTACCATGGAGTTTCAAGATCTCGGCGCG
CACTGTGCGGTCACAACTTGTAACATGCGTGACTTCCTCCCCTTCCTTTG
TGACTGCTGCCATAAAACTCATTGCTTAGAGCATCGGACCTACTCCTCGC
ATGCTTGTCCGCACCAAGGACGGAAGCAGCAGATGGCCATTCGGTGTCCT
CTCTGCAGTGCCACGCTCGCGCTCACAGCTGCCCAAGACCCTAATGTTGT
CTGGCAGCTTCATTCCGGGTCCCGCGACTGCGATCCTACCCGGAAGGCGA
AAAGGGAACGTTGTGCGGTGAAAGCTTGCAAAGAGATCCTGGGCCCCAGC
AACAGCCATGTCTGTGGGGTGTGTAGGAAGCGCGTCTGCCTACGACATCG
ATACCAAGACCAGCACGCCTGCGCGGGACCAGGAGGTCGAGGGGGAGGGA
GAGGGATCGCAGGGTGGTTCAGTAATGGTGGCGGGGGCGCGAGCAATACC
AGGAACAGCAACGGTAATAGGAAAGCGTCAACCAAGAAGGACGCTCGACC
AAGCGTCCCAGGTGAGAAAGGGCGCTCGGCGCCCCACCCGACCCGGAACT
CTCCCAGCGGCTTCGCACCCGGCACAACCACCACTACCAGTTGTAATGGA
AACGGTCAAGGTAGCAGCCATGGTGGTAATGGACGGCGGGGGAGTCGTGA
CAGGCAGCCTGACGGCGCGTCGAGAAGTCTGCAGGCTGTGGGGGACCGGC
GTAGGGGCGAAGGCGAGGCTAGAGGAGGGAAAATTGAGGAAAACGGATGC
AGCAATAATAATCTTAGGGACAGGCAGGTCGTCGGGGTGGGCAGTGGGTA
TCCCGGGGCCACCTCGTTGGCTATCGGTTCCTCCCAAGCGGGTCAGCAGG
TGGATGGAGGATGCCCCTATTGCCACGCCCTTTTCCACGACCCCGTGAAG
CTGGTGGAGCACGTGGAGACAATGCACAAGGGGGACCAGCTGCGGGAAGG
CGGGGGGAGTGGGGAGGGACTCTCCGGGTGTCGGCTTGCATGACGGAGGA
ATGTGACATCCAGGGGCCCGGCGCACCGTCTCCGTCCTGTCCCTTGCCTA
GTCTTCTCCCAAAGGGGTTTTAGACTATCGCTCGTTCGGAGACAAGAGAG
CTTTGGGGCGGAACGTCGACAATGGGAAAGGGAGACGGCGTGGGGGGGCT
TAAGGCTACAAGGCATATCCCAAAGATTCCCAGACGAGATCTCGTCTGCC
GGGCGAGCCACGAGAGCGGGGGCGAGAATCGTTTGTCGGGGCGCCGGTCA
AAGAGACTTTTGAAAGGTCTGCAGGAGCCAGGGTACGCTTGTTGTACAGT
GGGTGCCCCTAGGTTGGTAAGCATTATAAAATTCCCTCATGTTTATATCA
AGATTGCCAATAGGGCCCAATATACAAATCACAAAGAAATGTATGCTACT
TTGCGCTATTTT back to topprotein sequence of rna6632 >rna6632-protein ID=rna6632-protein|Name=rna6632|organism=Nannochloropsis gaditana|type=polypeptide|length=576bp
MTTRRKGKSSSMSSPRKTTNKGIIPDSGHSGEREENTRPTDNTAPSSFFK
LWTSAPFVVIFAIMAIAFALGLQHQSQGMDLADNIINLLQDYSGAVSDVP
SLSNWDAAQMPHKAQRQKQRRRTSKEVNRRLAPTLSRNMTVLIHDNGEST
PAGSLYLEPKTTTSIEELKSAVGLVIDACHGGTCRVFDRYGYEIKALGAL
HDEQLLFAVPPSRHFVWPAFEIGHRVAVPGVTSSLPGHPIILETLSDSPR
VFMLENFLSAEDADEVIETTLGITAAGFALKRSTTGTQGAVVSSQRTSEN
AFDTTSPVAMKLKRRVFDLLGMRPYVETWADGLQVLRYNASKAYIPHMDY
LEFDSNADHNFDSASPGGTNRFATVLLYLTDVEEGGETVFPLGEPLEKEM
RTTQEVQAEARARGRAADLKPGSWEEEMTETCISRLAVKPRKGRAVLFYS
QHPDGRPDERSLHGACPVVKGVKWAANLWVWNGPRFGHSATSLAKEAEGK
IQAVFSSAVEGVALYWETTRWGKMGPGEAELKAMTYQGHKWNVRRDEGDE
HGAVLASWTIEAEKAEDGIIKYRYEG back to topmRNA from alignment at CM002469.1:129300..131778- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna6632 ID=rna6632|Name=rna6632|organism=Nannochloropsis gaditana|type=mRNA|length=2479bp|location=Sequence derived from alignment at CM002469.1:129300..131778- (Nannochloropsis gaditana)
AGTACTCGCTCCAACACATGTCTCCCTCTTGTCACATAGCATATCACCTC
CACAATACATCTCTTTTTACAGCAAACGGCAATGACGACTCGCCGCAAAG
GCAAATCCTCCTCAATGTCCTCTCCTAGAAAGACGACCAACAAGGGCATA
ATTCCTGACTCTGGTCATAGCGGAGAGCGCGAGGAAAACACACGCCCGAC
CGACAACACGGCCCCTTCTTCCTTTTTTAAACTTTGGACTTCTGCACCTT
TCGTAGTCATCTTCGCCATCATGGCAATTGCATTCGCGCTGGGCTTGCAA
CACCAATCCCAAGGCATGGATTTGGCGGACAACATTATCAACCTCCTGCA
AGATTATTCAGGGGCAGTATCTGACGTCCCAAGCCTCTCGAATTGGGATG
CGGCACAGATGCCACACAAAGCCCAGAGACAAAAGCAAAGACGGAGGACA
AGCAAGGAGGTCAATCGCCGTCTTGCCCCTACTCTGTCACGAAATATGAC
CGTACTCATTCATGACAACGGCGAGAGCACTCCTGCTGGCTCCTTGTATC
TGGAGCCGAAGACAACGACATCGATCGAGGAGCTCAAATCTGCCGTGGGC
CTTGTGATTGACGCGTGTCACGGCGGGACCTGCCGTGTCTTCGACCGTTA
CGGCTACGAAATTAAAGCCCTGGGGGCCCTACACGACGAGCAACTCCTCT
TTGCCGTCCCCCCCAGCAGGCATTTTGTATGGCCAGCCTTCGAGATCGGC
CATCGCGTGGCCGTGCCTGGGGTCACGTCCTCCTTGCCCGGACATCCCAT
CATTCTCGAGACCCTCTCCGATTCCCCACGTGTCTTTATGTTGGAGAATT
TTCTTTCCGCCGAAGACGCTGACGAAGTGATCGAAACGACGCTTGGTAGG
CCAGGGTTTTGTGCGGGCTCTCCCCTCCCTCTGCCCCTCCCTATCCATCC
ACACACATTTAAATCTGGTCGTTTGCATTTTCTCTCGAGGACGTTATTCA
ATCGACGTCTTGTCCCTCGTCTCTCTGCAGGTATCACCGCCGCCGGCTTC
GCCCTGAAGAGATCTACGACTGGCACCCAAGGGGCGGTCGTTTCTTCGCA
ACGCACGAGTGAGAACGCCTTCGACACCACCTCGCCCGTGGCCATGAAGC
TGAAGCGAAGGGTCTTTGATCTTCTCGGCATGCGGTGGGGTGGGAAGGCG
GGAGGGAAGATGAAGGGGAAGGGGGGGGGGGATTATTCGGGCAGAAGCTC
GTTTGGCTGGTGTGGATTTCGGTTAAACGAGGCGGATGCCTGTGGCTGTA
TGCCTGGGTGCCTGATGCGATTTCTCAACTATCTTCTTTTTCCTCAGACC
CTACGTGGAAACATGGGCAGACGGACTCCAGGTGCTTCGTTACAACGCCA
GCAAGGCCTATATTCCGCACATGGACTACCTCGAGTTCGATAGCAATGCG
GACCATAACTTTGACTCCGCCAGCCCCGGAGGCACCAACAGGTTTGCGAC
TGTACTTCTGTACCTGACGGACGTCGAGGAAGGGGGCGAGACGGTCTTTC
CCCTGGGGGAGCCCTTGGAAAAAGAGATGAGGACAACGCAGGAGGTCCAG
GCGGAGGCTCGGGCCCGGGGGCGCGCGGCGGATCTGAAGCCGGGGTCGTG
GGAGGAAGAGATGACAGAAACCTGCATCTCCCGCCTGGCCGTCAAGCCGC
GAAAGGGTCGTGCGGTGTTGTTCTACAGCCAACATCCAGACGGAAGGCCG
GATGAGAGAAGTCTCCACGGGGCCTGCCCGGTTGTGAAGGGAGTCAAATG
GGCCGCCAACCTATGGGTGTGGAACGGCCCTCGTTTCGGTCACAGCGCCA
CTTCCCTAGCCAAGGAAGCGGAGGGTAAAATCCAGGCGGTCTTCAGCAGT
GCAGTGGAGGGCGTGGCTTTGTATTGGGAGACGACTCGGTGGGGGAAAAT
GGGGCCTGGAGAGGCCGAGCTGAAAGCCATGACCTACCAGGGGCACAAGT
GGAACGTGAGACGGGACGAAGGAGACGAGCATGGGGCTGTCCTGGCGTCC
TGGACGATCGAGGCCGAAAAGGCGGAGGATGGGATCATCAAATATCGATA
CGAAGGATGAGGGAGGAGGGAAGCTTGGTTGGAAACTGGGTTGATGTGTG
GGAAGGAAGAAAAGCGGACGCGTCATCTCTAGCGCCTCTAGTCAGCCATC
GGAACTTAGCCGTAAAAATGTCGCCTTGTCCCCTTCATACACAGAATGGA
AGCCAGCAAGATCGCACCAGGTACTGGCGAAGAGATGGTGCGTCTCTATT
TGTTACAAAACCATGAAAGAACAAGGCGTCCAGAAGCCAAGGAGAAGGCT
CAAAATAACCGGTGTACATCCACGCCGCGAAGGACATGCCAAAAAATAGC
GCAAAGTAGCATACATTTCTTTGTGATTTGTATATTGGGCCCTATTGGCA
ATCTTGATATAAACATGAGGGAATTTTAT back to topCoding sequence (CDS) from alignment at CM002469.1:129300..131778- >rna6632 ID=rna6632|Name=rna6632|organism=Nannochloropsis gaditana|type=CDS|length=5193bp|location=Sequence derived from alignment at CM002469.1:129300..131778- (Nannochloropsis gaditana)
ACCCTACGTGGAAACATGGGCAGACGGACTCCAGGTGCTTCGTTACAACG
CCAGCAAGGCCTATATTCCGCACATGGACTACCTCGAGTTCGATAGCAAT
GCGGACCATAACTTTGACTCCGCCAGCCCCGGAGGCACCAACAGGTTTGC
GACTGTACTTCTGTACCTGACGGACGTCGAGGAAGGGGGCGAGACGGTCT
TTCCCCTGGGGGAGCCCTTGGAAAAAGAGATGAGGACAACGCAGGAGGTC
CAGGCGGAGGCTCGGGCCCGGGGGCGCGCGGCGGATCTGAAGCCGGGGTC
GTGGGAGGAAGAGATGACAGAAACCTGCATCTCCCGCCTGGCCGTCAAGC
CGCGAAAGGGTCGTGCGGTGTTGTTCTACAGCCAACATCCAGACGGAAGG
CCGGATGAGAGAAGTCTCCACGGGGCCTGCCCGGTTGTGAAGGGAGTCAA
ATGGGCCGCCAACCTATGGGTGTGGAACGGCCCTCGTTTCGGTCACAGCG
CCACTTCCCTAGCCAAGGAAGCGGAGGGTAAAATCCAGGCGGTCTTCAGC
AGTGCAGTGGAGGGCGTGGCTTTGTATTGGGAGACGACTCGGTGGGGGAA
AATGGGGCCTGGAGAGGCCGAGCTGAAAGCCATGACCTACCAGGGGCACA
AGTGGAACGTGAGACGGGACGAAGGAGACGAGCATGGGGCTGTCCTGGCG
TCCTGGACGATCGAGGCCGAAAAGGCGGAGGATGGGATCATCAAATATCG
ATACGAAGGATGAGTATCACCGCCGCCGGCTTCGCCCTGAAGAGATCTAC
GACTGGCACCCAAGGGGCGGTCGTTTCTTCGCAACGCACGAGTGAGAACG
CCTTCGACACCACCTCGCCCGTGGCCATGAAGCTGAAGCGAAGGGTCTTT
GATCTTCTCGGCATGCGATGACGACTCGCCGCAAAGGCAAATCCTCCTCA
ATGTCCTCTCCTAGAAAGACGACCAACAAGGGCATAATTCCTGACTCTGG
TCATAGCGGAGAGCGCGAGGAAAACACACGCCCGACCGACAACACGGCCC
CTTCTTCCTTTTTTAAACTTTGGACTTCTGCACCTTTCGTAGTCATCTTC
GCCATCATGGCAATTGCATTCGCGCTGGGCTTGCAACACCAATCCCAAGG
CATGGATTTGGCGGACAACATTATCAACCTCCTGCAAGATTATTCAGGGG
CAGTATCTGACGTCCCAAGCCTCTCGAATTGGGATGCGGCACAGATGCCA
CACAAAGCCCAGAGACAAAAGCAAAGACGGAGGACAAGCAAGGAGGTCAA
TCGCCGTCTTGCCCCTACTCTGTCACGAAATATGACCGTACTCATTCATG
ACAACGGCGAGAGCACTCCTGCTGGCTCCTTGTATCTGGAGCCGAAGACA
ACGACATCGATCGAGGAGCTCAAATCTGCCGTGGGCCTTGTGATTGACGC
GTGTCACGGCGGGACCTGCCGTGTCTTCGACCGTTACGGCTACGAAATTA
AAGCCCTGGGGGCCCTACACGACGAGCAACTCCTCTTTGCCGTCCCCCCC
AGCAGGCATTTTGTATGGCCAGCCTTCGAGATCGGCCATCGCGTGGCCGT
GCCTGGGGTCACGTCCTCCTTGCCCGGACATCCCATCATTCTCGAGACCC
TCTCCGATTCCCCACGTGTCTTTATGTTGGAGAATTTTCTTTCCGCCGAA
GACGCTGACGAAGTGATCGAAACGACGCTTGACCCTACGTGGAAACATGG
GCAGACGGACTCCAGGTGCTTCGTTACAACGCCAGCAAGGCCTATATTCC
GCACATGGACTACCTCGAGTTCGATAGCAATGCGGACCATAACTTTGACT
CCGCCAGCCCCGGAGGCACCAACAGGTTTGCGACTGTACTTCTGTACCTG
ACGGACGTCGAGGAAGGGGGCGAGACGGTCTTTCCCCTGGGGGAGCCCTT
GGAAAAAGAGATGAGGACAACGCAGGAGGTCCAGGCGGAGGCTCGGGCCC
GGGGGCGCGCGGCGGATCTGAAGCCGGGGTCGTGGGAGGAAGAGATGACA
GAAACCTGCATCTCCCGCCTGGCCGTCAAGCCGCGAAAGGGTCGTGCGGT
GTTGTTCTACAGCCAACATCCAGACGGAAGGCCGGATGAGAGAAGTCTCC
ACGGGGCCTGCCCGGTTGTGAAGGGAGTCAAATGGGCCGCCAACCTATGG
GTGTGGAACGGCCCTCGTTTCGGTCACAGCGCCACTTCCCTAGCCAAGGA
AGCGGAGGGTAAAATCCAGGCGGTCTTCAGCAGTGCAGTGGAGGGCGTGG
CTTTGTATTGGGAGACGACTCGGTGGGGGAAAATGGGGCCTGGAGAGGCC
GAGCTGAAAGCCATGACCTACCAGGGGCACAAGTGGAACGTGAGACGGGA
CGAAGGAGACGAGCATGGGGCTGTCCTGGCGTCCTGGACGATCGAGGCCG
AAAAGGCGGAGGATGGGATCATCAAATATCGATACGAAGGATGAGTATCA
CCGCCGCCGGCTTCGCCCTGAAGAGATCTACGACTGGCACCCAAGGGGCG
GTCGTTTCTTCGCAACGCACGAGTGAGAACGCCTTCGACACCACCTCGCC
CGTGGCCATGAAGCTGAAGCGAAGGGTCTTTGATCTTCTCGGCATGCGAT
GACGACTCGCCGCAAAGGCAAATCCTCCTCAATGTCCTCTCCTAGAAAGA
CGACCAACAAGGGCATAATTCCTGACTCTGGTCATAGCGGAGAGCGCGAG
GAAAACACACGCCCGACCGACAACACGGCCCCTTCTTCCTTTTTTAAACT
TTGGACTTCTGCACCTTTCGTAGTCATCTTCGCCATCATGGCAATTGCAT
TCGCGCTGGGCTTGCAACACCAATCCCAAGGCATGGATTTGGCGGACAAC
ATTATCAACCTCCTGCAAGATTATTCAGGGGCAGTATCTGACGTCCCAAG
CCTCTCGAATTGGGATGCGGCACAGATGCCACACAAAGCCCAGAGACAAA
AGCAAAGACGGAGGACAAGCAAGGAGGTCAATCGCCGTCTTGCCCCTACT
CTGTCACGAAATATGACCGTACTCATTCATGACAACGGCGAGAGCACTCC
TGCTGGCTCCTTGTATCTGGAGCCGAAGACAACGACATCGATCGAGGAGC
TCAAATCTGCCGTGGGCCTTGTGATTGACGCGTGTCACGGCGGGACCTGC
CGTGTCTTCGACCGTTACGGCTACGAAATTAAAGCCCTGGGGGCCCTACA
CGACGAGCAACTCCTCTTTGCCGTCCCCCCCAGCAGGCATTTTGTATGGC
CAGCCTTCGAGATCGGCCATCGCGTGGCCGTGCCTGGGGTCACGTCCTCC
TTGCCCGGACATCCCATCATTCTCGAGACCCTCTCCGATTCCCCACGTGT
CTTTATGTTGGAGAATTTTCTTTCCGCCGAAGACGCTGACGAAGTGATCG
AAACGACGCTTGACCCTACGTGGAAACATGGGCAGACGGACTCCAGGTGC
TTCGTTACAACGCCAGCAAGGCCTATATTCCGCACATGGACTACCTCGAG
TTCGATAGCAATGCGGACCATAACTTTGACTCCGCCAGCCCCGGAGGCAC
CAACAGGTTTGCGACTGTACTTCTGTACCTGACGGACGTCGAGGAAGGGG
GCGAGACGGTCTTTCCCCTGGGGGAGCCCTTGGAAAAAGAGATGAGGACA
ACGCAGGAGGTCCAGGCGGAGGCTCGGGCCCGGGGGCGCGCGGCGGATCT
GAAGCCGGGGTCGTGGGAGGAAGAGATGACAGAAACCTGCATCTCCCGCC
TGGCCGTCAAGCCGCGAAAGGGTCGTGCGGTGTTGTTCTACAGCCAACAT
CCAGACGGAAGGCCGGATGAGAGAAGTCTCCACGGGGCCTGCCCGGTTGT
GAAGGGAGTCAAATGGGCCGCCAACCTATGGGTGTGGAACGGCCCTCGTT
TCGGTCACAGCGCCACTTCCCTAGCCAAGGAAGCGGAGGGTAAAATCCAG
GCGGTCTTCAGCAGTGCAGTGGAGGGCGTGGCTTTGTATTGGGAGACGAC
TCGGTGGGGGAAAATGGGGCCTGGAGAGGCCGAGCTGAAAGCCATGACCT
ACCAGGGGCACAAGTGGAACGTGAGACGGGACGAAGGAGACGAGCATGGG
GCTGTCCTGGCGTCCTGGACGATCGAGGCCGAAAAGGCGGAGGATGGGAT
CATCAAATATCGATACGAAGGATGAGTATCACCGCCGCCGGCTTCGCCCT
GAAGAGATCTACGACTGGCACCCAAGGGGCGGTCGTTTCTTCGCAACGCA
CGAGTGAGAACGCCTTCGACACCACCTCGCCCGTGGCCATGAAGCTGAAG
CGAAGGGTCTTTGATCTTCTCGGCATGCGATGACGACTCGCCGCAAAGGC
AAATCCTCCTCAATGTCCTCTCCTAGAAAGACGACCAACAAGGGCATAAT
TCCTGACTCTGGTCATAGCGGAGAGCGCGAGGAAAACACACGCCCGACCG
ACAACACGGCCCCTTCTTCCTTTTTTAAACTTTGGACTTCTGCACCTTTC
GTAGTCATCTTCGCCATCATGGCAATTGCATTCGCGCTGGGCTTGCAACA
CCAATCCCAAGGCATGGATTTGGCGGACAACATTATCAACCTCCTGCAAG
ATTATTCAGGGGCAGTATCTGACGTCCCAAGCCTCTCGAATTGGGATGCG
GCACAGATGCCACACAAAGCCCAGAGACAAAAGCAAAGACGGAGGACAAG
CAAGGAGGTCAATCGCCGTCTTGCCCCTACTCTGTCACGAAATATGACCG
TACTCATTCATGACAACGGCGAGAGCACTCCTGCTGGCTCCTTGTATCTG
GAGCCGAAGACAACGACATCGATCGAGGAGCTCAAATCTGCCGTGGGCCT
TGTGATTGACGCGTGTCACGGCGGGACCTGCCGTGTCTTCGACCGTTACG
GCTACGAAATTAAAGCCCTGGGGGCCCTACACGACGAGCAACTCCTCTTT
GCCGTCCCCCCCAGCAGGCATTTTGTATGGCCAGCCTTCGAGATCGGCCA
TCGCGTGGCCGTGCCTGGGGTCACGTCCTCCTTGCCCGGACATCCCATCA
TTCTCGAGACCCTCTCCGATTCCCCACGTGTCTTTATGTTGGAGAATTTT
CTTTCCGCCGAAGACGCTGACGAAGTGATCGAAACGACGCTTG back to top
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