rna663, rna663 (mRNA) Nannochloropsis gaditana

Overview
Namerna663
Unique Namerna663
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length539
Alignment locationCM002456.1:105950..106530 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101878g1.1196.mrna
Orig protein idgnl|cribi|Naga_101878g1.1196
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:105950..106530 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101878g1gene636Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna663rna663-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30010.1cds663Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna663 ID=rna663|Name=rna663|organism=Nannochloropsis gaditana|type=mRNA|length=539bp
ACTGGTGTCTTTTTTCCTTTTTGTCCCGTGTACGTGACCCCTGCCTCCCT
CCCTCCCTCCACCCCTTCCTCCCTCCCTCTTTTCTTTCCTCCCTCCCTCT
CTCCCCCCCGCCCTCAGAGCAAGTACGCGGCGATCGAGGAACGGATCCGT
CATCGGAAAGCGAATAAAGGGAAAGTAGCGACGAAAGGGAGGGAGGAAGG
GATGGAGGAAGTGACGGAGGAAGGGCGACAGGAAAGGGGGGAGGAAGGGA
GGGAGGAGGAGGAGGAGGAGATCGGACGCTTGAGAGGAAGAGGGTGTCAG
GATGGGGTATGCTTAGGCATGATGGTAGACGAGGACTAGGATATGGGAGG
GAAGAAGGGGGGAGGGAGGGAGGGAGGGAGGGTGTGCATTGCGAAAGCAG
CCATCCCCCCCGCTGCATCCGAATGACAAGCAGAGAGGCTTGTGTTTCCC
CCACACATGAATGACGACATTGTAGAAATTGAAGGCCAAGAAACAACATT
ATGAGCCATACGCCGAGAAATTTGAAGGGCTCCTTCCAG
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protein sequence of rna663

>rna663-protein ID=rna663-protein|Name=rna663|organism=Nannochloropsis gaditana|type=polypeptide|length=122bp
MSSRISPYPSCFATLPPSPLQMFIAPSTYASTYFELCSLMPSDAEIRRQL
HRMIELAGATVRVTVLRKEGGEGGRERGGGGGGGVGGGGNGGKGCHHHHT
AEVLDDGEGRRNPMMFMERLHA
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mRNA from alignment at CM002456.1:105950..106530+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna663 ID=rna663|Name=rna663|organism=Nannochloropsis gaditana|type=mRNA|length=581bp|location=Sequence derived from alignment at CM002456.1:105950..106530+ (Nannochloropsis gaditana)
ATGTCGTCACGAATTTCGCCTTACCCCTCCTGCTTTGCCAccctaccccc
ctcccctctccagaTGTTCATCGCTCCTTCCACTTACGCCTCCACTTACT
TCGAGCTCTGTTCCTTGATGCCTTCGGACGCCGAAATTCGGCGACAGCTG
CACCGGATGATCGAGTTGGCAGGTGCCACTGTCCGTGTGACAGTCctaag
gaaggaaggaggggagggagggagggagagaggcggaggtggaggcggag
gagttggagggggaggaaatggagggaaagggtgccatcatcatcatacG
GCAGAAGTGTTggatgatggggaaggaaggaggaaccCGATGATGTTTAT
GGAGCGCCTGCATGCGTAAGGAGgtgaaaaaagggagggagtggaggaaa
gaaggagttCTTTCTGCCTATCCTCAGTGTCAACGACACGTACAAGGGTA
CCTGCCGGGAAATGACACATAAATATCAATTGAAGGGTCCCAGATGACGT
GGCCAGCCACCCATGGCGTGGGCAGGAAGGCACTGTCGGGAGGATCGCTG
AACCAGTGGCGAGGTCGGTGGCGGCACAcag
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Coding sequence (CDS) from alignment at CM002456.1:105950..106530+

>rna663 ID=rna663|Name=rna663|organism=Nannochloropsis gaditana|type=CDS|length=369bp|location=Sequence derived from alignment at CM002456.1:105950..106530+ (Nannochloropsis gaditana)
ATGTCGTCACGAATTTCGCCTTACCCCTCCTGCTTTGCCAccctaccccc
ctcccctctccagaTGTTCATCGCTCCTTCCACTTACGCCTCCACTTACT
TCGAGCTCTGTTCCTTGATGCCTTCGGACGCCGAAATTCGGCGACAGCTG
CACCGGATGATCGAGTTGGCAGGTGCCACTGTCCGTGTGACAGTCctaag
gaaggaaggaggggagggagggagggagagaggcggaggtggaggcggag
gagttggagggggaggaaatggagggaaagggtgccatcatcatcatacG
GCAGAAGTGTTggatgatggggaaggaaggaggaaccCGATGATGTTTAT
GGAGCGCCTGCATGCGTAA
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Synonyms
Publications