rna6625, rna6625 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6625
Unique Name	rna6625
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1720
Alignment location	CM002469.1:106503..108678 +

Link to JBrowse

Properties


Property Name	Value
Product	Kua-ubiquitin conjugating enzyme hybrid, localization
Orig transcript id	gnl\|cribi\|Naga_100063g13.3898.mrna
Orig protein id	gnl\|cribi\|Naga_100063g13.3898
Gbkey	mRNA
Note	encoded by transcript variant 1; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002469.1	supercontig	CM002469.1:106503..108678 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100063g13	gene6403	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6625	rna6625-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24073.1	cds6609	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002469.1:106503..108678+
coding sequence from alignment at CM002469.1:106503..108678+

mRNA sequence

>rna6625 ID=rna6625|Name=rna6625|organism=Nannochloropsis gaditana|type=mRNA|length=1720bp
AAAGCCCCATAGCCGCATGCAGGCCAAAATGCTTTACGCACCTACACAGA
AGTTCTTCCCTGGCCAAGGGTAGCTTGGATGGTTAAGTAGAGGTAAATGG
TACAGTTTTCTTTCCCAACGATTCACGATTTTCTTGGCGGTTGCCTGCAT
GTTATGCTTGACACCACGCATGTCGCTTCCTACTGTCGGTCATGAAACAT
GCGCAGAGATCAGGCTCCTTCGCTGCACACAGTGGCAAAATTATGCAGAA
AATCTTCCAAATTAACCCTCACATCCATTTTTAATCATAAATTATACATT
TTGGGGGGCATTTCTTTTCAATAGTGGTCAGGACTGCACGGCTTCCGGTA
GTCAAAACAATCATCCACTTGCACACAAGTTGGTGCATCTGAAAGATGTG
CATCGGGTCTGTTTCGGCCGCTATTCCGCCGGTCACTGCTGCTTCTGCAG
AGGCGGTGGCCCAACATTCGTCGATGCCTGTACCGGAATCTGATGCGCAA
GATGGAGACGCATCGATGGATATAGTCGACCGCTTAAATGTACAGGCGAA
ACATTTAGCGGCGAAGACAATCGGTGTACCTGGTGACGAGCATTACGCAT
GCTTACAGATGGTCAAAGAGGGCGCCACGGTTTTCAAGCACCGCATTTGG
CCTCTCATGTACATATATTGGGCATACACGGTTTACGGCATCTTGACGGG
GCCCTCCCTTGCTTTTGCATTGGGTGCTTTCGTGCTGACTTACCTGTACA
TCGACCTTTATGGCGCCGTCTTACACATTGTTCTTGACAACCCGAATTTC
CTCAAACTGCCCCTAATAGGAGAAGCGTGCCTGGAGTTCCAATTCCATCA
CATCATTCCCCACGAAATTACGGTCCGAGATTTCCGACACATCGCTGCGG
ATCTGAACGGCATCATCGGCTTAGAATACGGAGTGAATCTCATTCTATTC
AATGGTCTCACAGACCCGGCTTACCGGTGCGTTGCCTGCTGCGCGGTCCT
GAACGCTTATTTGGGTCAACTCGCCCATCGACAGGCACACATGCGCCCCG
AGAAAAGAGATCCCGTGGTGGCCGTACTCCAAGGCTTGGGGCTGATGGTG
ACGCCGGACACGCACCGACGACACCACAAGACATACGACCAAGGATTTCC
CATTCTGAGCGGTTGGTCGGACGCCCCGGTAACGTTTTTGTATCGATACG
TGGTGCCATCTCAATGGGTGTGGCTGGCCATGTTCGTCCTCCTTACTTTT
GGCGGTATCGCGGGTCTGATTCGGCTGTATCTGCCTCTCGCTGCATGGGC
GCTGGAAGAGGGAGGTTGTGAGGGTGCAATAAGGGGGTGGGCGAAATCGT
CGATGTTGTAAGGAGGAATGGAAGAGGTAGAAAAGTGAGTTCCTGGATGG
CCAGGGGCAAGCCAGAAAGCACGAGTGATAGCTTTGATACGTGAAAATTA
GTCCAACGGTATACATCCCGGGCATTGGACTACGTGGTTAAGGCGATGTG
AGCCAATTGTAAGAGGTTTGTGTACGATGGGGGGGGGCTGGGCAAATGGC
GTTTTTTAATCTGACTGGATGTCGGCAGTGGTCATAAAATTGTGTATCAC
GAAGTTCACGAGATAAAGGCAGCCCGAATCTAGGAAAAGCAATGAATGTT
GGGAATCTCGAAGGACTTTCGCCGAAATTCGGCAAGAGGTATTGGCAGAT
TTCTCCACGCTCGGATTCCC

protein sequence of rna6625

>rna6625-protein ID=rna6625-protein|Name=rna6625|organism=Nannochloropsis gaditana|type=polypeptide|length=321bp
MCIGSVSAAIPPVTAASAEAVAQHSSMPVPESDAQDGDASMDIVDRLNVQ
AKHLAAKTIGVPGDEHYACLQMVKEGATVFKHRIWPLMYIYWAYTVYGIL
TGPSLAFALGAFVLTYLYIDLYGAVLHIVLDNPNFLKLPLIGEACLEFQF
HHIIPHEITVRDFRHIAADLNGIIGLEYGVNLILFNGLTDPAYRCVACCA
VLNAYLGQLAHRQAHMRPEKRDPVVAVLQGLGLMVTPDTHRRHHKTYDQG
FPILSGWSDAPVTFLYRYVVPSQWVWLAMFVLLTFGGIAGLIRLYLPLAA
WALEEGGCEGAIRGWAKSSML

mRNA from alignment at CM002469.1:106503..108678+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6625 ID=rna6625|Name=rna6625|organism=Nannochloropsis gaditana|type=mRNA|length=2176bp|location=Sequence derived from alignment at CM002469.1:106503..108678+ (Nannochloropsis gaditana)
GAAGTTCTTCCCTGGCCAAGGGTAGCTTGGATGGTTAAGTAGAGGTAAAT
GGTACAGTTTTCTTTCCCAACGATTCACGATTTTCTTGGCGGTTGCCTGC
ATGTTATGCTTGACACCACGCATGTCGCTTCCTACTGTCGGTCATGAAAC
ATGCGCAGAGATCAGGCTCCTTCGCTGCACACAGTGGCAAAATTATGCAG
AAAATCTTCCAAATTAACCCTCACATCCATTTTTAATCATAAATTATACA
TTTTGGGGGGCATTTCTTTTCAATAGTGGTCAGGACTGCACGGCTTCCGG
TAGTCAAAACAATCATCCACTTGCACACAAGTTGGTGCATCTGAAAGATG
TGCATCGGGTCTGTTTCGGCCGCTATTCCGCCGGTCACTGCTGCTTCTGC
AGAGGCGGTGGCCCAACATTCGTCGATGCCTGTACCGGAATCTGATGCGC
AAGATGGAGACGCATCGATGGATATAGTCGACCGCTTAAATGTACAGGCG
AAACATTTAGCGGCGAAGACAATCGGTGTACCTGGTGACGAGCATTACGC
ATGCTTACAGATGGTCAAAGAGGGCGCCACGGTAGGGTCTAGGACGGGGA
ATGAGGGGCAAAGCGCGAAGGAACAATAAAAAAATTGTCACTCTTGTCTA
TGTCCAAATGAATCTTGTGAGATGTATGCCCTGAAGGCATCAACTCCGAC
TCTCTCCTCTTATTGTCCCTTCCACTATCAATTACAAAAGGTTTTCAAGC
ACCGCATTTGGCCTCTCATGTACATATATTGGGCATACACGGTTTACGGC
ATCTTGACGgggccctcccttgcttttgcATTGGGTGCTTTCGTGCTGAC
TTACCTGTACATCGACCTTTATGGCGCCGTCTTACACATTGTTCTTGACA
ACCCGAATTTCCTCAAACTGCCCCTAATAGGAGAAGCGTGCCTGGAGTTC
CAAGTACGATGCTTTTTTTAATATCTTACAGGGAAGGTTTCCCTCTGTTC
ACTCTTGTCACCAGCTATGATCCCTatcccctcttttttcccattGAAAT
TGTGATGCTGAATGCGATTTTATGTCGTCACATCTTCCCAGCATTCCCAC
CACATCATCTTGGACGACAAGTCTTTTACGCTCATTTtcccctcgttctc
ctcttcctcatccagTTCCATCACATCATTCCCCACGAAATTACGGTCCG
AGATTTCCGACACATCGCTGCGGATCTGAACGGCATCATCGGCTTAGAAT
ACGGAGTGAATCTCATTCTATTCAATGGTCTCACAGACCCGGCTTACCGG
TGCGTTGCCTGCTGCGCGGTCCTGAACGCTTATTTGGGTCAACTCGCCCA
TCGACAGGCACACATGCGCCCCGAGAAAAGAGATCCCGTGGTGGCCGTAC
TCCAAGGCTTGGGGCTGATGGTGACGCCGGACACGCACCGACGACACCAC
AAGACATACGACCAAGGATTTCCCATTCTGAGCGGTACGTGAGCCATAAC
ATcaatcttcttcctttctcttccgtcGCCGTTctgccgccctccgtcct
catGTCTGCCGCCTTactccgtctcctcttccccttccgttcctttccct
cgctttttcttccctaGGTTGGTCGGACGCCCCGGTAACGTTTTTGTATC
GATACGTGGTGCCATCTCAATGGGTGTGGCTGGCCATGTTCGTCCTCCTT
ACTTTTGGCGGTATCGCGGGTCTGATTCGGCTGTATCTGCCTCTCGCTGC
ATGGgcgctggaagagggaggttgTGAGGGTGCAATAAGGGGGTGGGCGA
AATCGTCGATGTTgtaaggaggaatggaagaggtAGAAAAGTGAGTTCCT
GGATGGCCAGGGGCAAGCCAGAAAGCACGAGTGATAGCTTTGATACGTGA
AAATTAGTCCAACGGTATACATCCCGGGCATTGGACTACGTGGTTAAGGC
GATGTGAGCCAATTGTAAGAGGTTTGTGTAcgatgggggggggctgggca
AATGGCGTTTTTTAATCTGACTGGATGTCGGCAGTGGTCATAAAATTGTG
TATCACGAAGTTCACGAGATAAAGGCAGCCCGAATCTAGGAAAAGCAATG
AATGTTGGGAATCTCGAAGGACTTTCGCCGAAATTCGGCAAGAGGTATTG
GCAGATTTCTCCACGCTCGGATTCCC

Coding sequence (CDS) from alignment at CM002469.1:106503..108678+

>rna6625 ID=rna6625|Name=rna6625|organism=Nannochloropsis gaditana|type=CDS|length=3864bp|location=Sequence derived from alignment at CM002469.1:106503..108678+ (Nannochloropsis gaditana)
ATGTGCATCGGGTCTGTTTCGGCCGCTATTCCGCCGGTCACTGCTGCTTC
TGCAGAGGCGGTGGCCCAACATTCGTCGATGCCTGTACCGGAATCTGATG
CGCAAGATGGAGACGCATCGATGGATATAGTCGACCGCTTAAATGTACAG
GCGAAACATTTAGCGGCGAAGACAATCGGTGTACCTGGTGACGAGCATTA
CGCATGCTTACAGATGGTCAAAGAGGGCGCCACGGTTTTCAAGCACCGCA
TTTGGCCTCTCATGTACATATATTGGGCATACACGGTTTACGGCATCTTG
ACGgggccctcccttgcttttgcATTGGGTGCTTTCGTGCTGACTTACCT
GTACATCGACCTTTATGGCGCCGTCTTACACATTGTTCTTGACAACCCGA
ATTTCCTCAAACTGCCCCTAATAGGAGAAGCGTGCCTGGAGTTCCAATTC
CATCACATCATTCCCCACGAAATTACGGTCCGAGATTTCCGACACATCGC
TGCGGATCTGAACGGCATCATCGGCTTAGAATACGGAGTGAATCTCATTC
TATTCAATGGTCTCACAGACCCGGCTTACCGGTGCGTTGCCTGCTGCGCG
GTCCTGAACGCTTATTTGGGTCAACTCGCCCATCGACAGGCACACATGCG
CCCCGAGAAAAGAGATCCCGTGGTGGCCGTACTCCAAGGCTTGGGGCTGA
TGGTGACGCCGGACACGCACCGACGACACCACAAGACATACGACCAAGGA
TTTCCCATTCTGAGCGGTTGGTCGGACGCCCCGGTAACGTTTTTGTATCG
ATACGTGGTGCCATCTCAATGGGTGTGGCTGGCCATGTTCGTCCTCCTTA
CTTTTGGCGGTATCGCGGGTCTGATTCGGCTGTATCTGCCTCTCGCTGCA
TGGgcgctggaagagggaggttgTGAGGGTGCAATAAGGGGGTGGGCGAA
ATCGTCGATGTTgtaaATGTGCATCGGGTCTGTTTCGGCCGCTATTCCGC
CGGTCACTGCTGCTTCTGCAGAGGCGGTGGCCCAACATTCGTCGATGCCT
GTACCGGAATCTGATGCGCAAGATGGAGACGCATCGATGGATATAGTCGA
CCGCTTAAATGTACAGGCGAAACATTTAGCGGCGAAGACAATCGGTGTAC
CTGGTGACGAGCATTACGCATGCTTACAGATGGTCAAAGAGGGCGCCACG
GTTTTCAAGCACCGCATTTGGCCTCTCATGTACATATATTGGGCATACAC
GGTTTACGGCATCTTGACGgggccctcccttgcttttgcATTGGGTGCTT
TCGTGCTGACTTACCTGTACATCGACCTTTATGGCGCCGTCTTACACATT
GTTCTTGACAACCCGAATTTCCTCAAACTGCCCCTAATAGGAGAAGCGTG
CCTGGAGTTCCAATTCCATCACATCATTCCCCACGAAATTACGGTCCGAG
ATTTCCGACACATCGCTGCGGATCTGAACGGCATCATCGGCTTAGAATAC
GGAGTGAATCTCATTCTATTCAATGGTCTCACAGACCCGGCTTACCGGTG
CGTTGCCTGCTGCGCGGTCCTGAACGCTTATTTGGGTCAACTCGCCCATC
GACAGGCACACATGCGCCCCGAGAAAAGAGATCCCGTGGTGGCCGTACTC
CAAGGCTTGGGGCTGATGGTGACGCCGGACACGCACCGACGACACCACAA
GACATACGACCAAGGATTTCCCATTCTGAGCGGTTGGTCGGACGCCCCGG
TAACGTTTTTGTATCGATACGTGGTGCCATCTCAATGGGTGTGGCTGGCC
ATGTTCGTCCTCCTTACTTTTGGCGGTATCGCGGGTCTGATTCGGCTGTA
TCTGCCTCTCGCTGCATGGgcgctggaagagggaggttgTGAGGGTGCAA
TAAGGGGGTGGGCGAAATCGTCGATGTTgtaaATGTGCATCGGGTCTGTT
TCGGCCGCTATTCCGCCGGTCACTGCTGCTTCTGCAGAGGCGGTGGCCCA
ACATTCGTCGATGCCTGTACCGGAATCTGATGCGCAAGATGGAGACGCAT
CGATGGATATAGTCGACCGCTTAAATGTACAGGCGAAACATTTAGCGGCG
AAGACAATCGGTGTACCTGGTGACGAGCATTACGCATGCTTACAGATGGT
CAAAGAGGGCGCCACGGTTTTCAAGCACCGCATTTGGCCTCTCATGTACA
TATATTGGGCATACACGGTTTACGGCATCTTGACGgggccctcccttgct
tttgcATTGGGTGCTTTCGTGCTGACTTACCTGTACATCGACCTTTATGG
CGCCGTCTTACACATTGTTCTTGACAACCCGAATTTCCTCAAACTGCCCC
TAATAGGAGAAGCGTGCCTGGAGTTCCAATTCCATCACATCATTCCCCAC
GAAATTACGGTCCGAGATTTCCGACACATCGCTGCGGATCTGAACGGCAT
CATCGGCTTAGAATACGGAGTGAATCTCATTCTATTCAATGGTCTCACAG
ACCCGGCTTACCGGTGCGTTGCCTGCTGCGCGGTCCTGAACGCTTATTTG
GGTCAACTCGCCCATCGACAGGCACACATGCGCCCCGAGAAAAGAGATCC
CGTGGTGGCCGTACTCCAAGGCTTGGGGCTGATGGTGACGCCGGACACGC
ACCGACGACACCACAAGACATACGACCAAGGATTTCCCATTCTGAGCGGT
TGGTCGGACGCCCCGGTAACGTTTTTGTATCGATACGTGGTGCCATCTCA
ATGGGTGTGGCTGGCCATGTTCGTCCTCCTTACTTTTGGCGGTATCGCGG
GTCTGATTCGGCTGTATCTGCCTCTCGCTGCATGGgcgctggaagaggga
ggttgTGAGGGTGCAATAAGGGGGTGGGCGAAATCGTCGATGTTgtaaAT
GTGCATCGGGTCTGTTTCGGCCGCTATTCCGCCGGTCACTGCTGCTTCTG
CAGAGGCGGTGGCCCAACATTCGTCGATGCCTGTACCGGAATCTGATGCG
CAAGATGGAGACGCATCGATGGATATAGTCGACCGCTTAAATGTACAGGC
GAAACATTTAGCGGCGAAGACAATCGGTGTACCTGGTGACGAGCATTACG
CATGCTTACAGATGGTCAAAGAGGGCGCCACGGTTTTCAAGCACCGCATT
TGGCCTCTCATGTACATATATTGGGCATACACGGTTTACGGCATCTTGAC
GgggccctcccttgcttttgcATTGGGTGCTTTCGTGCTGACTTACCTGT
ACATCGACCTTTATGGCGCCGTCTTACACATTGTTCTTGACAACCCGAAT
TTCCTCAAACTGCCCCTAATAGGAGAAGCGTGCCTGGAGTTCCAATTCCA
TCACATCATTCCCCACGAAATTACGGTCCGAGATTTCCGACACATCGCTG
CGGATCTGAACGGCATCATCGGCTTAGAATACGGAGTGAATCTCATTCTA
TTCAATGGTCTCACAGACCCGGCTTACCGGTGCGTTGCCTGCTGCGCGGT
CCTGAACGCTTATTTGGGTCAACTCGCCCATCGACAGGCACACATGCGCC
CCGAGAAAAGAGATCCCGTGGTGGCCGTACTCCAAGGCTTGGGGCTGATG
GTGACGCCGGACACGCACCGACGACACCACAAGACATACGACCAAGGATT
TCCCATTCTGAGCGGTTGGTCGGACGCCCCGGTAACGTTTTTGTATCGAT
ACGTGGTGCCATCTCAATGGGTGTGGCTGGCCATGTTCGTCCTCCTTACT
TTTGGCGGTATCGCGGGTCTGATTCGGCTGTATCTGCCTCTCGCTGCATG
GgcgctggaagagggaggttgTGAGGGTGCAATAAGGGGGTGGGCGAAAT
CGTCGATGTTgtaa

Synonyms

Publications