rna6622, rna6622 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6622
Unique Name	rna6622
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3102
Alignment location	CM002469.1:101537..103856 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100063g11.3889.mrna
Orig protein id	gnl\|cribi\|Naga_100063g11.3889
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002469.1	supercontig	CM002469.1:101537..103856 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100063g11	gene6401	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6622	rna6622-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24064.1	cds6606	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002469.1:101537..103856+
coding sequence from alignment at CM002469.1:101537..103856+

mRNA sequence

>rna6622 ID=rna6622|Name=rna6622|organism=Nannochloropsis gaditana|type=mRNA|length=3102bp
AAAGACCAGCTTTGTCTCGTGGGCCACAAACTTTGTATCGATCCTTTCTT
TCTATTGCTCCACACGATCTTTCTGGTGCTCGCCCAGTGTGCATACGTTG
GAAGCAAACTTCTGATCTCATGTGCATATGCAAATTTTCCAGGATAATGC
TTGTTCCGCACCTTTTATTGCACCACACCTGAAACGCAACTACACTCAAG
TACTATTACAGCACAGTTAAATACTTACCCTGCCTTGCCTTCCTCAACTA
CCCGCACACAGACAAAGAGAACCTCATCGTTCCCCCGTCAACTTTTCAAA
CAAATAAACCATGCGCATTTTCCGTCTGGTCCTTACCCTGTCCTTGGCTG
CGACGGTCTTCGCAGAGGACACCGTCTCTACTACAAACACCGAAGCCGTC
GCTGGGGCCATCCAGGGAGCTGTCTCTGACAGCGGTGTTACCACCCCGCC
CATCTCTCCGGAGATGAGGGATGCTGCCACAGACGTGATTAAGAAAGTGA
GCGACGGCGCGGCGGTGAGTGAGATGGTGAACGAAACGGACGCACAAGCT
CCCGCTATTCAGATCGTGAATGACTCCGAAGAAAAGGCTCCTGCCATCCC
TCCTGAGATGAAAGATGCTGCCGGCCAGGTTATCAAAGAAGTAGCCAACA
GCGAGGCGGTGAAAGGTGCTGTGAAGGAGAGCGGATTGGAGACTCCCAAC
ATTTCCCCCGAAATGAAAGACGCAGCCGGGAACGTGATCAAGCAGGTGGC
CAACAGCGATGCCGCCAAACAGAACGGGGCGTCAGACCTACTGAACACCG
TCGCAGGACAGGTTGATTCCGGCGCCGCCTCGAGCACAGGCAAGGCATCG
ACGAGCGCCAATCCCGGGATGGATCTGTTGACGAATGCTGCCCAGGCGTC
CAACAACCCAACATTGCAGGCTGCGAGCTCGATCGGAAGTATGGCGAAGC
AGGCGGGCGTCATCCCCACCAACAGCATTGACCGAGCGAAAGCCGCCAAC
CCGGAGCTCGGTGCGTTGATCAATGGCCTCCAAAGCACTGCTAGCATTGC
CAATAGCATGAGCCAGTGCTACGCCTCCATCGAAGGAGACGAGGACGCCA
TCAGCAAGTCCCTCCTCTCCTTGGGCACGAGCATGGTCAGCTCTGACTCG
ATCACCGCGGCCTCGGAGGTGGGTAAGGCCTTGATCATGGCGTCGCCAGC
CGCTAGCACGTCGCAAAAGAACGCCATGTACCAGCTCTTCCGGATTTACT
TGGACCAAAATGCCAACACGGGCAAGGCGTTGACCACGGCCCAGGAGAAG
GCTTACTCGTCCTTGACCACCGAGTGTAACGCCGCTTTCGACGACGTCGT
CACGACCTACCAGGACAGCAAGGGCACCATTTCCTCAATCATGGCGGGTG
GAAATTCCAACGTGACCTGCGCCAATTTCCAGGACAACTCCACCTCCGTC
GATATGACCCTGTGCGTGTGGCCCACGGCCATTTGGACTCTTGGGGACAA
GATGATGGCGAATGTGAGTGCGACCTTCACCAACTATGGCGTAGGCCTCT
GCGACGTCAAGTTCTACATCATCAATCTGGCAGACGCCGTGGGACTCAAG
CCCGCCTGGCTGCCGGATGCGAAGGAGGCGTTCCCCCAAGGCATTCCTCA
GGGGGCCGAGATCGCGATTGAGGCAGCCGTGCCCTGGACCAACGAGATTG
CGGAGAACAAGCCAGTCGTCGACATTCTGAAGGGATGGTCGGCGTGCCCT
AACGGCCCCGCTACGCCTCCCCCTGTCGTCCAACCGACAACGAAGCCTAA
AGTGGACAATGGCGTGCTTAGCTCGGCGTCGGCATGCTTCATTACCCCTG
CTTGTACCGCAGCCATCGCTCCTTTTGGAGATGACTCGTGCGGGGCGTAC
TCACAGCTTTTGACTTCCGGATGCTCCACTTGCTCCACTGAGATTTTGGA
AGCGGCCGGCAAATCTTGCTTGACGACCTGCTCCAGCCAGTACTGTGGCA
CAGCCAGCGACAAGGAGGAAGCTACCAGCGGAGCCGGCGCTCTTTCCAAG
GCCGTCGCCTTTGTGGTCACTCTGACAGCTGCCTTTGCCTTTGCGCTTTA
GGTTCCTCCTGGGGGGCGAAGGGAGGCGGAGAGGTGGAAAAATGATAATA
CAGGGCAGGAGGATGGTGGAAGTGGGAAAAAAATCCGTCATTGGAATAAC
ATCTCTTGTAAGATTTTGAATCATTGCAAAGATGGCGGAAAAACTATGCA
TGTAATTTGGGCGGAGGAAATGCATACGTATGGAAAGGAAGTTGTTTTCT
TTCACACAGGAGAATCAGAACTACAAATGTGAGGCCTGAAATGAAAAAAG
TGAGGGGGGAGCGTAATAGAACTCGTCTGTGCAAGACTGATGTGAATCTA
CAGGAAAATGAAGCGCGCGAGCGGCTTTACGCGCCATATCACCACGGTCT
CTTTTGTTTAGCCAGTATATTTTTCTTCCAAGCACTTTGTAGAGTACTCG
AAAAGGAACGAAAAAAAGAGAATGAAAGAGACAGGGATAGGAGGCAACAG
ATACAATTGGCTGATCGAGACAAGATGAGGATTAAAAGAGGGTCCTGTGT
CGGCTGCATTAAAAGATTCTGGTTTGAAAGTTGAGGATGAATAAATCGAG
ATCATGCCATACCATGTTCCTTTTTTGGGATTCTCTCAGGGCTTTTTCTT
CATTTTGAATCACGAGCCTGAGACAGCGACACAAAGCAAAGGAGTTGAAG
GAAACGCGGCAAACGACGGTGTTCTGGGACAGCAAAATGCAACCGAGAAA
GAAAAGTGAAGAAAAGTAAGAGACGAAAGTAGAGACTGTTTCCCTTGCAA
AGCACTTGCTAAACCCGTGGAAAGAAAAATTGTACACGTTTTAGGGGGAA
TTATGTGTCTGTATTGGTTTATTTTGAAGCTTCCTAGAGTATGCTGGAGT
GCCATACCTTCTTGTAAAGTGCTTCGCTTAAATAGCATGATTATGCACAT
AGAAATGGACAAGGAGATCGTTGTACGATTATAAAATTCAAATCGAGACA
CCAATCGGCGCCACACGCTGAGTCTGCAAGTTTCTTTCATTTCGGCAATA
CC

protein sequence of rna6622

>rna6622-protein ID=rna6622-protein|Name=rna6622|organism=Nannochloropsis gaditana|type=polypeptide|length=616bp
MEKNPPRRMAVLRRLGWAAGLVIALNDVPSVRALSGMGGSAALGMAISAA
GDKISLRKAAGLDKIDVSSVVETPDSPYATFNEVMQMSSFVAALESLTAN
EELKKQAEAYLSASEYAAYVDLARHLSKCYGSLSPAGGPLADTWTSGVRS
TTQGQAAVLAVDGSVNKLSTTPVRKQQAMKAALGLYDTWIKTGSPSRRLK
RISPRHHRAQQGLSDGGWSQLPAPLTGAYDALKGYGTVECRTAYQRMSEM
YNSGEIGGNNGGLNNIPGTGGNGGGLPGSGGSMPGSGGGMPGSGSQGGFP
NAGSLPGNPFGTSMSGKEPGAEGPPNPFDNPDVVTDPEENPLDGATTTEG
KDQEVPMPTSKPTATLAEVGTNKCEVLENGAVSVQLCQGSTVTASSATIT
GSIINVGNQTLCGLKLIVDNFELASSFYPPWLPSYAGEFQAGNTITFGIT
VPYTSGAPRPEADIDQSIAACVALTMPPTDAPTLVTASPTRSPTARPAPT
EPPGPVFDLLALDGQDTKCLKGCSNIVHGLTSCEAFDAIFAFRCDVCDKD
TQAQVKEICRSTFECGNAMCHLVGTEQQHLSSGAGRLRGDLGSVKTSLSL
MLGLAMILMMLNMHDG

mRNA from alignment at CM002469.1:101537..103856+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6622 ID=rna6622|Name=rna6622|organism=Nannochloropsis gaditana|type=mRNA|length=2320bp|location=Sequence derived from alignment at CM002469.1:101537..103856+ (Nannochloropsis gaditana)
GAATATTAATGTTTCAACATATTATGATTGGAATCAATGTGCTTGCCTTT
GTAAACTTGGGAGCACGACAATGTGATCTTATCACGGCTTACGACAACTA
AAGAATTTAGGAAGTCAAGAGACATATGTAGAATGCTTTATTGCACCCCG
CTTACACGACGACACCTATTATAACAGCATACTTGACGCTGACTTCATAT
GGAGAAAAATCCGCCTAGAAGAATGGCAGTTTTGCGAAGATTGGGCTGGG
CCGCTGGACTAGTTATAGCTCTGAATGACGTGCCGTCTGTCCGAGCTCTA
AGTGGCATGGGCGGAAGCGCGGCTCTTGGAATGGCTATTTCTGCCGCCGG
AGACAAAATAAGTCTACGAAAAGCAGCAGGTTTAGATAAAATTGACGTGT
CATCTGTCGTGGAGACACCGGACTCTCCCTACGCAACTTTTAATGAAGTG
ATGCAAATGTCCTCTTTCGTTGCTGCCTTGGAATCATTAACAGCGAATGA
AGAACTCAAAAAGCAGGCAGAAGCCTATTTATCCGCATCAGAGTATGCAG
CATACGTCGACCTGGCACGCCATCTCTCAAAATGCTACGGATCGCTGTCG
CCTGCCGGAGGCCCTTTGGCTGATACTTGGACCTCGGGTGTGAGAAGCAC
TACTCAGGGACAGGCCGCCGTTTTAGCGGTGGATGGTTCAGTTAATAAAC
TGTCAACCACACCTGTTCGAAAGCAGCAAGCCATGAAAGCTGCGTTGGGC
CTGTATGACACTTGGATCAAAACGggttctccctcccggcgtCTGAAAAG
AATTTCGCCACGACATCACCGGGCACAACAAGGTTTGAGCGACGGAGGCT
GGAGCCAGCTACCCGCCCCTTTGACAGGAGCTTATGATGCTCTTAAAGGA
TATGGTACAGTAGAATGCCGTACCGCCTACCAGCGGATGAGCGAGATGTA
CAATTCTGGGGAAATAGGAGGAAACAATGGCGGGTTGAACAACATCCCAG
GCACCGGGGGTAATGGGGGAGGGCTTCCAGGATCTGGAGGGAGCATGCCG
GGGTCTGGGGGTGGAATGCCTGGCAGTGGAAGTCAAGGAGGCTTCCCCAA
TGCGGGAAGCTTGCCCGGCAACCCCTTTGGGACGTCCATGAGCGGGAAGG
AGccaggggcggagggacccCCAAACCCCTTCGATAACCCTGACGTGGTG
ACCGATCCCGAGGAAAATCCTTTGGACGGGGCTACCACCACCGAGGGCAA
GGATCAAGAAGTCCCAATGCCCACTTCCAAACCGACCGCCACCCTGGCCG
AGGTGGGCACAAATAAGTGCGAGGTGTTGGAGAATGGGGCGGTGAGCGTG
CAGCTTTGCCAAGGGTCTACGGTCActgcgtcctccgccaccattaCGGG
CTCGATCATCAACGTCGGCAACCAGACATTATGCGGACTCAAGCTTATTG
TCGACAATTTTGAGCTCGCGTCTTCGTTCTATCCGCCATGGCTGCCCTCC
TACGCGGGCGAATTCCAAGCCGGAAATACCATCACCTTCGGGATAACTGT
GCCTTATACAAGTGGAGCCCCCAGGCCAGAGGCAGACATTGACCAGTCCA
TCGCAGCATGTGTGGCACTGACCATGCCGCCCACTGATGCCCCCACCTTG
GTTActgcctcccccacccgAAGTCCTACGGCCAGACCAGCTCCGACGGA
GCCTCCCGGACCAGTCTTTGACTTGCTTGCTCTGGACGGGCAGGACACCA
AGTGCCTGAAAGGCTGCTCCAACATCGTACATGGACTCACATCCTGCGAA
GCATTCGACGCCATATTTGCTTTCCGTTGCGACGTTTGCGACAAGGACAC
GCAGGCCCAGGTGAAGGAAATCTGCCGGAGCACGTTCGAGTGTGGAAACG
CCATGTGTCATTTGGTTGGAACCGAGCAGCAGCACTTGAGCTCGGGGGCT
GGACGGCTGCGAGGGGACTTGGGCTCTGTGAAGACATCTTTGTCCCTGAT
GCTGGGGCTTGCGATGATCTTGATGATGCTGAATATGCATGACGGATGAG
CGTGCTGAACCGCGGGGAGGATCATCGAGTCAGTGCGCAGCAAGGAAAGC
GCAGGATGATGGCTTTCCCAGTGAGTATCGATTCGACCTGCGACCAGTTC
AAAGAGTGCGTGTGTTGAAGTACGGGGAGAATCCTTGTCATTATTTCGAG
TTATGCGTGCTTTGGCTGCGAATGTATCTGTGCATGTGCCTTCGACGACC
AAGACAGGGTtgcgaggaaaaaagaacaTCCTTAATCACACGGAAAGAAA
ATGTCGGAAAATATTACTGG

Coding sequence (CDS) from alignment at CM002469.1:101537..103856+

>rna6622 ID=rna6622|Name=rna6622|organism=Nannochloropsis gaditana|type=CDS|length=1851bp|location=Sequence derived from alignment at CM002469.1:101537..103856+ (Nannochloropsis gaditana)
ATGGAGAAAAATCCGCCTAGAAGAATGGCAGTTTTGCGAAGATTGGGCTG
GGCCGCTGGACTAGTTATAGCTCTGAATGACGTGCCGTCTGTCCGAGCTC
TAAGTGGCATGGGCGGAAGCGCGGCTCTTGGAATGGCTATTTCTGCCGCC
GGAGACAAAATAAGTCTACGAAAAGCAGCAGGTTTAGATAAAATTGACGT
GTCATCTGTCGTGGAGACACCGGACTCTCCCTACGCAACTTTTAATGAAG
TGATGCAAATGTCCTCTTTCGTTGCTGCCTTGGAATCATTAACAGCGAAT
GAAGAACTCAAAAAGCAGGCAGAAGCCTATTTATCCGCATCAGAGTATGC
AGCATACGTCGACCTGGCACGCCATCTCTCAAAATGCTACGGATCGCTGT
CGCCTGCCGGAGGCCCTTTGGCTGATACTTGGACCTCGGGTGTGAGAAGC
ACTACTCAGGGACAGGCCGCCGTTTTAGCGGTGGATGGTTCAGTTAATAA
ACTGTCAACCACACCTGTTCGAAAGCAGCAAGCCATGAAAGCTGCGTTGG
GCCTGTATGACACTTGGATCAAAACGggttctccctcccggcgtCTGAAA
AGAATTTCGCCACGACATCACCGGGCACAACAAGGTTTGAGCGACGGAGG
CTGGAGCCAGCTACCCGCCCCTTTGACAGGAGCTTATGATGCTCTTAAAG
GATATGGTACAGTAGAATGCCGTACCGCCTACCAGCGGATGAGCGAGATG
TACAATTCTGGGGAAATAGGAGGAAACAATGGCGGGTTGAACAACATCCC
AGGCACCGGGGGTAATGGGGGAGGGCTTCCAGGATCTGGAGGGAGCATGC
CGGGGTCTGGGGGTGGAATGCCTGGCAGTGGAAGTCAAGGAGGCTTCCCC
AATGCGGGAAGCTTGCCCGGCAACCCCTTTGGGACGTCCATGAGCGGGAA
GGAGccaggggcggagggacccCCAAACCCCTTCGATAACCCTGACGTGG
TGACCGATCCCGAGGAAAATCCTTTGGACGGGGCTACCACCACCGAGGGC
AAGGATCAAGAAGTCCCAATGCCCACTTCCAAACCGACCGCCACCCTGGC
CGAGGTGGGCACAAATAAGTGCGAGGTGTTGGAGAATGGGGCGGTGAGCG
TGCAGCTTTGCCAAGGGTCTACGGTCActgcgtcctccgccaccattaCG
GGCTCGATCATCAACGTCGGCAACCAGACATTATGCGGACTCAAGCTTAT
TGTCGACAATTTTGAGCTCGCGTCTTCGTTCTATCCGCCATGGCTGCCCT
CCTACGCGGGCGAATTCCAAGCCGGAAATACCATCACCTTCGGGATAACT
GTGCCTTATACAAGTGGAGCCCCCAGGCCAGAGGCAGACATTGACCAGTC
CATCGCAGCATGTGTGGCACTGACCATGCCGCCCACTGATGCCCCCACCT
TGGTTActgcctcccccacccgAAGTCCTACGGCCAGACCAGCTCCGACG
GAGCCTCCCGGACCAGTCTTTGACTTGCTTGCTCTGGACGGGCAGGACAC
CAAGTGCCTGAAAGGCTGCTCCAACATCGTACATGGACTCACATCCTGCG
AAGCATTCGACGCCATATTTGCTTTCCGTTGCGACGTTTGCGACAAGGAC
ACGCAGGCCCAGGTGAAGGAAATCTGCCGGAGCACGTTCGAGTGTGGAAA
CGCCATGTGTCATTTGGTTGGAACCGAGCAGCAGCACTTGAGCTCGGGGG
CTGGACGGCTGCGAGGGGACTTGGGCTCTGTGAAGACATCTTTGTCCCTG
ATGCTGGGGCTTGCGATGATCTTGATGATGCTGAATATGCATGACGGATG
A

Synonyms

Publications