rna6619, rna6619 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6619
Unique Name	rna6619
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	531
Alignment location	CM002469.1:95433..97502 -

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Properties


Property Name	Value
Product	Trypsin Inhibitor-like, cysteine rich domain protein
Orig transcript id	gnl\|cribi\|Naga_100063g9.3886.mrna
Orig protein id	gnl\|cribi\|Naga_100063g9.3886
Gbkey	mRNA
Note	encoded by transcript variant 1; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002469.1	supercontig	CM002469.1:95433..97502 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100063g9	gene6399	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6619	rna6619-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24061.1	cds6603	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002469.1:95433..97502-
coding sequence from alignment at CM002469.1:95433..97502-

mRNA sequence

>rna6619 ID=rna6619|Name=rna6619|organism=Nannochloropsis gaditana|type=mRNA|length=531bp
ATGTTGATGGCTAGCCAAGTGCAGTCATGGGGCAAAGTCCTTCCTGCTCC
TACCGCCCCACTTTTTCACGCTTTCGATGCAATGTCCCTTCGATCCCATT
TTGCTTATACCCCTGTCTATCACGTTAGCAGGATCAAGCGACTTGGCCCA
CCTCTTCTACGAGACGGCGGATGTTTGACGCCAGGTACACGTCCGTTTCT
TCCCGTCCCTCCCCAGCATTGTCTCCTCTTTCTTCGTTTTTGTGGCTCCA
TCTTGTGTCCATGTTATTGGCGTGACATCTGTGCCGGTGGGTGCATCCAC
TTGGGATACCTTTCCGCGCGCTACCTTTTCCTTCTACCTTTCCTGCCTCT
GCGCGGGTGTACACATGTATTGGGTGACAAAGGTGAAGATAGTCGCTTGT
CAACTGTATGCAGGCTCGCGGAGCGTGTGAATTTGAAATTGGACGGCGTT
GGCTACTTTTTAGTGGTAGACCAGTTGGATACATACGTATCCTGCTATGA
GAGCGGAAGAATCAGCAAATATGATAGGTAA

protein sequence of rna6619

>rna6619-protein ID=rna6619-protein|Name=rna6619|organism=Nannochloropsis gaditana|type=polypeptide|length=442bp
MKARRHLTCFAALLAMGAFLTDNAPLAEAQRIRGSVSTEKADAIPAAGPA
VPVQDAAPSSADLSTTVNEDGVPKTKVRVNIRRKDASKEAQNGLQEEGHQ
THHVYVNKMEVKRLEEPPATGIAVGEPNPAASQHHTHHAHFEFQQRTMQS
RVQEGADVREAKDELKERGIGGATHDNNHNEILDTASESETGLNRMTLKE
YLLEYGEEGRRGRKNQKSPGAASIAATDKAGARTTTPAMKTHTTQSLSSM
PSPNKVESPVDSTREGAATEGTELSPVPSESAPTKNGLAGMADETKHNVQ
EVTKRIRKRAAEPGRERGDIDPADLEEIRARAVGDEDEEGVEAEDAAAQV
PGNAVEEVRPECPGGMVYSDCGRPCTATCEHLRPVCPAVCVARCHCPHDK
PIWDGENCLEEAQCRLKAKADGNQEDGANKMSGKALRGARVG

mRNA from alignment at CM002469.1:95433..97502-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6619 ID=rna6619|Name=rna6619|organism=Nannochloropsis gaditana|type=mRNA|length=2070bp|location=Sequence derived from alignment at CM002469.1:95433..97502- (Nannochloropsis gaditana)
GGGGATGGGTGTCCGCGTAAATGTGACAAACTATTTTTACCAGCTTAACA
TACCATTATGTGCCACCTAGGCGTCTAAATTGGTAGTAAATATCAAATGA
AGGCCCGCCGGCATCTCACTTGCTTCGCGGCCCTATTGGGTAAGTCTCCC
ATAACCTCATGCATGCGCATTCCCCGTATCTTCCCCCCTTCACCCCTCAC
TTCCTGAGGCATGTTCCTCACGATTCGAATTTTAATATGTTCGTAAAGCC
ATGGGGGCTTTCTTGACAGACAATGCTCCCCTAGCCGAGGCTCAACGCAT
TCGTGGAAGTGTTAGTACGGAGAAAGCTGATGCTATCCCGGCGGCAGGCC
CTGCCGTCCCCGTCCAGGACGCAGCTCCCTCAAGTGCTGATTTATCCACC
ACCGTGAATGAGGACGGGGTTCCTAAAACGAAAGTCCGCGTAAACATCCG
ACGCAAAGACGCCTCAAAAGAAGCACAGAACGGATTGCAAGAAGAAGGGC
ATCAAACACACCACGTGTACGTAAATAAGATGGAGGTCAAGAGACTTGAA
GAGCCACCCGCTACCGGTATTGCTGTCGGAGAACCTAATCCTGCTGCTTC
TCAGCACCACACTCATCACGCACATTTTGAGTTCCAACAGCGGACGATGC
AGTCAAGGGTGCAAGAGGGAGCGGACGTCCGGGAGGCGAAGGACGAGCTG
AAGGAGCGAGGAATTGGGGGAGCCACTCATGATAACAACCATAACGAGAT
CCTTGATACGGCCTCTGAATCTGAAACAGGCTTGAATCGCATGACTCTCA
AGGAATATTTGCTTGAATATGGAGAGGAAGGAAGGCGGGGAAGGAAGAAC
CAGAAGAGTCCTGGCGCAGCATCTATAGCAGCCACGGACAAGGCGGGCGC
AAGAACCACGACACCGGCGATGAAAACTCATACAACGCAGTCCTTGTCGA
GCATGCCTTCCCCCAATAAGGTCGAGTCCCCGGTGGATTCGACTAGAGAG
GGAGCTGCGACGGAAGGAACAGAGCTGTCACCCGTTCCCTCCGAGTCCGC
CCCCACAAAGAATGGATTGGCCGGCATGGCGGACGAGACCAAACACAACG
TGCAGGAAGTCACCAAGCGAATTCGGAAAAGGGCGGCGGAACCAGGCCGA
GAACGGGGGGACATTGACCCAGCAGATTTGGAGGAGATCCGGGCACGGGC
CGTGGGGGACGAGGACGAGGAGGGCGTGGAGGCGGAAGACGCGGCAGCCC
AGGTCCCAGGAAACGCAGTGGAGGAGGTCAGGCCGGAATGCCCGGGTGGA
ATGGTTTACAGCGACTGCGGTCGCCCCTGCACCGCCACCTGCGAGCATCT
AAGACCGGTGTGTCCGGCGGTGTGTGTCGCGCGCTGTCACTGCCCACACG
ACAAGCCGATTTGGGACGGAGAAAATTGTCTGGAGGAGGCACAGTGTCGC
CTCAAAGCAAAGGCGGATGGAAACCAGGAAGACGGGGCAAATAAGATGTC
GGGCAAAGCACTGCGTGGAGCGAGAGTGGGGTAGTGGCCGTGGAACCGTA
AGTTTTTGCGTCGGAAGAAGACAAATCGTTGCGGCATAATGGTGGTCAGT
GCCCGTCATCTTTATGAAAAATATGGTTGTCTCGAGCGAGCTATAAATAT
CCAATATTCCCATGGAATGGGGTACAACAGAGACAACGAAATGGACGAAG
CTGGGAATGCGAAGGAACCAATCCATGAGTAACAGCGAAAAATAGATGAA
AGATGTATAAAACGTTTGGCAGGGAATGCAAAGATATTGTACAGGCAAAC
ATCATGAAAAAGGGCTACAAAGCATAGGAATACTTTTGATTCGTCGGAGA
GAGGTAGGCGAGTTTGAAAGATTGGATTGAGATGTTATCTCTAAGGTCAA
GAGCTCTTGAGGGCTCGTACTTCAGAGTACTCATAGCTTGATCAGAGTGG
GGAATCAGTTGAGTGCCTCCTTCCACCTTTCACAAACCAATTGCAAAAGT
AGATAGAAGCGAAGTTAAAAAGAAATCAGCACTCGGCACACACGCATGCG
CTCCTACCAATGGCTACCAA

Coding sequence (CDS) from alignment at CM002469.1:95433..97502-

>rna6619 ID=rna6619|Name=rna6619|organism=Nannochloropsis gaditana|type=CDS|length=2658bp|location=Sequence derived from alignment at CM002469.1:95433..97502- (Nannochloropsis gaditana)
CCATGGGGGCTTTCTTGACAGACAATGCTCCCCTAGCCGAGGCTCAACGC
ATTCGTGGAAGTGTTAGTACGGAGAAAGCTGATGCTATCCCGGCGGCAGG
CCCTGCCGTCCCCGTCCAGGACGCAGCTCCCTCAAGTGCTGATTTATCCA
CCACCGTGAATGAGGACGGGGTTCCTAAAACGAAAGTCCGCGTAAACATC
CGACGCAAAGACGCCTCAAAAGAAGCACAGAACGGATTGCAAGAAGAAGG
GCATCAAACACACCACGTGTACGTAAATAAGATGGAGGTCAAGAGACTTG
AAGAGCCACCCGCTACCGGTATTGCTGTCGGAGAACCTAATCCTGCTGCT
TCTCAGCACCACACTCATCACGCACATTTTGAGTTCCAACAGCGGACGAT
GCAGTCAAGGGTGCAAGAGGGAGCGGACGTCCGGGAGGCGAAGGACGAGC
TGAAGGAGCGAGGAATTGGGGGAGCCACTCATGATAACAACCATAACGAG
ATCCTTGATACGGCCTCTGAATCTGAAACAGGCTTGAATCGCATGACTCT
CAAGGAATATTTGCTTGAATATGGAGAGGAAGGAAGGCGGGGAAGGAAGA
ACCAGAAGAGTCCTGGCGCAGCATCTATAGCAGCCACGGACAAGGCGGGC
GCAAGAACCACGACACCGGCGATGAAAACTCATACAACGCAGTCCTTGTC
GAGCATGCCTTCCCCCAATAAGGTCGAGTCCCCGGTGGATTCGACTAGAG
AGGGAGCTGCGACGGAAGGAACAGAGCTGTCACCCGTTCCCTCCGAGTCC
GCCCCCACAAAGAATGGATTGGCCGGCATGGCGGACGAGACCAAACACAA
CGTGCAGGAAGTCACCAAGCGAATTCGGAAAAGGGCGGCGGAACCAGGCC
GAGAACGGGGGGACATTGACCCAGCAGATTTGGAGGAGATCCGGGCACGG
GCCGTGGGGGACGAGGACGAGGAGGGCGTGGAGGCGGAAGACGCGGCAGC
CCAGGTCCCAGGAAACGCAGTGGAGGAGGTCAGGCCGGAATGCCCGGGTG
GAATGGTTTACAGCGACTGCGGTCGCCCCTGCACCGCCACCTGCGAGCAT
CTAAGACCGGTGTGTCCGGCGGTGTGTGTCGCGCGCTGTCACTGCCCACA
CGACAAGCCGATTTGGGACGGAGAAAATTGTCTGGAGGAGGCACAGTGTC
GCCTCAAAGCAAAGGCGGATGGAAACCAGGAAGACGGGGCAAATAAGATG
TCGGGCAAAGCACTGCGTGGAGCGAGAGTGGGGTAGATGAAGGCCCGCCG
GCATCTCACTTGCTTCGCGGCCCTATTGGCCATGGGGGCTTTCTTGACAG
ACAATGCTCCCCTAGCCGAGGCTCAACGCATTCGTGGAAGTGTTAGTACG
GAGAAAGCTGATGCTATCCCGGCGGCAGGCCCTGCCGTCCCCGTCCAGGA
CGCAGCTCCCTCAAGTGCTGATTTATCCACCACCGTGAATGAGGACGGGG
TTCCTAAAACGAAAGTCCGCGTAAACATCCGACGCAAAGACGCCTCAAAA
GAAGCACAGAACGGATTGCAAGAAGAAGGGCATCAAACACACCACGTGTA
CGTAAATAAGATGGAGGTCAAGAGACTTGAAGAGCCACCCGCTACCGGTA
TTGCTGTCGGAGAACCTAATCCTGCTGCTTCTCAGCACCACACTCATCAC
GCACATTTTGAGTTCCAACAGCGGACGATGCAGTCAAGGGTGCAAGAGGG
AGCGGACGTCCGGGAGGCGAAGGACGAGCTGAAGGAGCGAGGAATTGGGG
GAGCCACTCATGATAACAACCATAACGAGATCCTTGATACGGCCTCTGAA
TCTGAAACAGGCTTGAATCGCATGACTCTCAAGGAATATTTGCTTGAATA
TGGAGAGGAAGGAAGGCGGGGAAGGAAGAACCAGAAGAGTCCTGGCGCAG
CATCTATAGCAGCCACGGACAAGGCGGGCGCAAGAACCACGACACCGGCG
ATGAAAACTCATACAACGCAGTCCTTGTCGAGCATGCCTTCCCCCAATAA
GGTCGAGTCCCCGGTGGATTCGACTAGAGAGGGAGCTGCGACGGAAGGAA
CAGAGCTGTCACCCGTTCCCTCCGAGTCCGCCCCCACAAAGAATGGATTG
GCCGGCATGGCGGACGAGACCAAACACAACGTGCAGGAAGTCACCAAGCG
AATTCGGAAAAGGGCGGCGGAACCAGGCCGAGAACGGGGGGACATTGACC
CAGCAGATTTGGAGGAGATCCGGGCACGGGCCGTGGGGGACGAGGACGAG
GAGGGCGTGGAGGCGGAAGACGCGGCAGCCCAGGTCCCAGGAAACGCAGT
GGAGGAGGTCAGGCCGGAATGCCCGGGTGGAATGGTTTACAGCGACTGCG
GTCGCCCCTGCACCGCCACCTGCGAGCATCTAAGACCGGTGTGTCCGGCG
GTGTGTGTCGCGCGCTGTCACTGCCCACACGACAAGCCGATTTGGGACGG
AGAAAATTGTCTGGAGGAGGCACAGTGTCGCCTCAAAGCAAAGGCGGATG
GAAACCAGGAAGACGGGGCAAATAAGATGTCGGGCAAAGCACTGCGTGGA
GCGAGAGTGGGGTAGATGAAGGCCCGCCGGCATCTCACTTGCTTCGCGGC
CCTATTGG

Synonyms

Publications