rna6614, rna6614 (mRNA) Nannochloropsis gaditana

Overview
Namerna6614
Unique Namerna6614
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2055
Alignment locationCM002469.1:81427..81696 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100063g2.3885.mrna
Orig protein idgnl|cribi|Naga_100063g2.3885
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:81427..81696 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100063g2gene6394Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24060.1cds6598Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6614rna6614-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6614 ID=rna6614|Name=rna6614|organism=Nannochloropsis gaditana|type=mRNA|length=2055bp
ATGTCCGCCTGCGACCGGACCACGCATTGGGACCTACAACAAAACCAGGG
CCGGGGCGCCACGGAGATTGACATCATGGAGGCAATGTCTGGGAAGCCCC
ACAAAGTGACAAAGAAAGGCGACCTCGGTGTCGGCGTCCCGTACATGTCC
AGCACCCTCCAAGTTTCGCCTGGAGTGGAAAAAAACCGTCCACAGGCCGG
GAAGAACTTCACCGAGCACCAGGAGGAGTGGACCTGGTACGACGGTCTCC
GCTTCGGGGAGAAGAGCAAGATGAACATGTATTTCTATGGAACACTGCTG
GACAAGACGCAGAAGGACGAGCCGGCGGGCCGAAGCATCCACCAGGTCTA
CCAGGCAGACGCGGTCTCGGCCCTGACCTCACTCAGCGCCACGCACTGGG
AAGATTTCCACACCTACCGGCTGGAGTGGATGCCCGGGCCGGAGGGGTAT
CTGGCCTGGTACTTGGACGGAGAGATGCTTTACGACGTCCCTGCTTCGGC
CCTTTCGAACGTGACGGGCGCGCAAATCCCAGTGGAGCCCTCCTACGTGA
TTTTGAACACGGCTGTCTCTACAACTTGGGGGTTTCCGGAAACCTGCCCC
GCTGGTTGCGCCTGCACGTGCTTCGATTGCGCGAAGCCGGAGTGTCAGTG
CGGCCTCCCCGAAGGCTTGTGCGAGAGTCTCCCGGCCTCCATGCTGGTCG
ACTACGTCCGAATCTACCAGCTCGAGGATGATGAGAGGCATTTCCTCGGC
TGTAACCACCCGAAATTCCCCACGCGGAAATTCATCCAGGCACACCGCTG
GCGGTACCAACGCGATCATGAGAAGGTGCCTCTAAAGCCTGTCCATCGAG
GCAAAGGAAAATGCGCGAATAACGCAGACTGCAATCCGGGGGGCTCCTGC
AACCGAAGAAGGAAATGTGTCTGCCACGACGGGTGGACCGGGCCCCAGTA
TGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAAGGGGG
GGACCGGAGAAGGGAACAAGAGAGAGAAAACGAGGGGCACATGTGTAAAT
GGCGAGAAAGGTGACGAATGTGGGCGAGGCAGAAAGGCTGACACCGGGAC
TCATGTGTTGATGATTTGGAGAGCGATGCCCCCCCTGATCTTCCTACCCT
GCCTCTTTCTCTCCTTCATTCTCCCTTCCTTGCCCCCCCCCTCCTCTCTT
CCAGCTGCAAACAAAAAGACTACCACGACGACAACGTGCGGGGAAGGGTT
TTCCTCCACTTTCAACTTCCAGGTCGCTTTCCTGCCAGCTTGGTCGCTGC
CCTCTCCACTTTAGGGGCAGTCCTGATAGGGGCCGTTTTGGTCTGGGGCC
GGGCACGGGAGAGGGAGGAGGAGGAGGAACGACGGAGGGAAGAGGAAACA
CAGGAACAGATTGGTCGATAGGGTTGGCAGCCGTGTGGAAGGGGGGGGAC
AAGAAGGAGGTGATCTTTTTCGGTATTGCCCGTAGGGTTGCGTAGGGGGT
TGCAGGAGTGGGATGGAGACAAAGGTAGACATTGGGGGCGAGAAGCTCGG
AGGGATGGACGGAGACTTTGGGATGGACGAAGTAAAGTATGCTTTTTGAA
AATGCGAACGGGATTTGTTAGGGACCTCACGGGTCTGTGCACGTTATGAG
CGAAGGGATGGGAGGGGGGGGGGGGTGGGGAGGGAAAGAGAGAAACGTGG
TAAAATAGTGTATGTAGTGGGGGCAGGATTGAAGACCATTGCGAGCATGG
CAAGTCAGCAGAAGATAGAGGGTGAGGGGGGGGGGGGGCACGACTCAAGG
ACTTGACGAGGAGGGTTAATCCACAGTAGGAGTTCGGTGGGAGAACCGTG
ACGACAGCCTAAACATCTATGCAAAAGATGTCGCGACGCCGGGCAGCTGG
GGGCAAAGGGATGTGGAGGGCCTCGATGCGAAATTTGATCAAGGGAAAGA
ATGCACAGGAGGCAGAGAATTGTTGCTTTCTGCAGGGCATTGAGTGCTGC
TCGTCCCTGAACGCGGAAGCGTAGAATGGACTCAGCTCCCGCCTCACTTT
TCTCC
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protein sequence of rna6614

>rna6614-protein ID=rna6614-protein|Name=rna6614|organism=Nannochloropsis gaditana|type=polypeptide|length=89bp
MLWMDGRASTGSSSNHRAHTTTTTTINKNNTSNNIINRNHHHNHHHNNVN
HISSSHSNRNRSRMPGDRGQGRSRGGGDATTQRSGVSGR
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mRNA from alignment at CM002469.1:81427..81696-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6614 ID=rna6614|Name=rna6614|organism=Nannochloropsis gaditana|type=mRNA|length=270bp|location=Sequence derived from alignment at CM002469.1:81427..81696- (Nannochloropsis gaditana)
ATGCTGTGGATGGACGGGAGGGCTTCGACGGGCTCGAGCAGCAACCATCG
CGCCCACACCACCACCACCACCACCATCAACAAGAACAACACCAGCAACA
ACATTATCAACCGCAACCACCACCACAACCATCACCACAACAACGTCAAC
CACATATCCTCCAGCCACAGCAACCGGAACAGGAGCCGCATGCCAGGGGA
TCGAGGGCAGGGGAGGAGCAGGGGGGGGGGAGACGCCACCACACAGAGGA
GCGGGGTCAGCGGGCGCTAG
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Coding sequence (CDS) from alignment at CM002469.1:81427..81696-

>rna6614 ID=rna6614|Name=rna6614|organism=Nannochloropsis gaditana|type=CDS|length=270bp|location=Sequence derived from alignment at CM002469.1:81427..81696- (Nannochloropsis gaditana)
ATGCTGTGGATGGACGGGAGGGCTTCGACGGGCTCGAGCAGCAACCATCG
CGCCCACACCACCACCACCACCACCATCAACAAGAACAACACCAGCAACA
ACATTATCAACCGCAACCACCACCACAACCATCACCACAACAACGTCAAC
CACATATCCTCCAGCCACAGCAACCGGAACAGGAGCCGCATGCCAGGGGA
TCGAGGGCAGGGGAGGAGCAGGGGGGGGGGAGACGCCACCACACAGAGGA
GCGGGGTCAGCGGGCGCTAG
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Synonyms
Publications