rna6613, rna6613 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6613
Unique Name	rna6613
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	537
Alignment location	CM002469.1:77637..80226 +

Link to JBrowse

Properties


Property Name	Value
Product	Beta-glucan synthesis-associated, SKN1
Orig transcript id	gnl\|cribi\|Naga_100063g1.3897.mrna
Orig protein id	gnl\|cribi\|Naga_100063g1.3897
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002469.1	supercontig	CM002469.1:77637..80226 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100063g1	gene6393	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6613	rna6613-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24072.1	cds6597	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002469.1:77637..80226+
coding sequence from alignment at CM002469.1:77637..80226+

mRNA sequence

>rna6613 ID=rna6613|Name=rna6613|organism=Nannochloropsis gaditana|type=mRNA|length=537bp
ATGCCTACCTACCTCCCCCTGCACCCTCTCCTCCTCCTCCTCCTCCTCCT
CGCGGCCTTCTCCCCTCCCTCCCTCCTCACCAAGGCCGGGTGGGTGGACC
CCGACAGCCCACACTCAGTCCAGCGCACCCACTCCCTCCGCGACCCGAAC
CTTCCCTCTCTGCGCCTAGTCATGTCGGACGAATTTAATGTGGCAGCTCG
GACCTTTGCGGACGGGCACGACCCTACCTGGACCGCGGGGGACCACAGCG
ACGACGCCAGGACCAGCGTGGGGAAAGGGGCTTTGATATATTACAACCAT
TCCTACGCGAGCACCACCGAAGAGGGTCACCTCAAAATCACCACCACCAG
CGAGTTGACGCAGTGGAAAGGGTTCAACCCGTTCACGCAGAAATACGAAA
TCTTTGAAAAGGAGTTTCGCGGCGCCATGGTCAACACCTGGAACAAGTTC
TGCTTCTCCGGCGGGGTGGTGGAAGCCTCCTTAAAACTACCCGGACCCAG
CGACGTCGGGCTACCTACGAGCATTCCACCAACTTGA

protein sequence of rna6613

>rna6613-protein ID=rna6613-protein|Name=rna6613|organism=Nannochloropsis gaditana|type=polypeptide|length=437bp
MSACDRTTHWDLQQNQGRGATEIDIMEAMSGKPHKVTKKGDLGVGVPYMS
STLQVSPGVEKNRPQAGKNFTEHQEEWTWYDGLRFGEKSKMNMYFYGTLL
DKTQKDEPAGRSIHQVYQADAVSALTSLSATHWEDFHTYRLEWMPGPEGY
LAWYLDGEMLYDVPASALSNVTGAQIPVEPSYVILNTAVSTTWGFPETCP
AGCACTCFDCAKPECQCGLPEGLCESLPASMLVDYVRIYQLEDDERHFLG
CNHPKFPTRKFIQAHRWRYQRDHEKVPLKPVHRGKGKCANNADCNPGGSC
NRRRKCVCHDGWTGPQYGGREGGREGGREGGKGGTGEGNKREKTRGTCVN
GEKGDECGRGRKADTGTHVLMIWRAMPPLIFLPCLFLSFILPSLPPPSSL
PAANKKTTTTTTCGEGFSSTFNFQVAFLPAWSLPSPL

mRNA from alignment at CM002469.1:77637..80226+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6613 ID=rna6613|Name=rna6613|organism=Nannochloropsis gaditana|type=mRNA|length=2590bp|location=Sequence derived from alignment at CM002469.1:77637..80226+ (Nannochloropsis gaditana)
ATGTCGTAAGCAAATGTCGTGTCCTGGCAGGCCAAGACATATTCCCTTGT
ATGTAGGAATCGTTCGACCGTGCCAATATCGTAGGCATGcacccgccgcc
tcccctcccctgtttCCACCACGTGATTGCTTAAAATTTTTGAATCCAAA
AAAGCGGGGCCCGTaacgctttctcccccctttctccaacgACAGGAAAT
CAGCGCCTGCGACCGGACCACGCATTGGGACCTACAACAAAACCAGGGCC
GGGGCGCCACGGAGATTGACATCATGGAGGCAATGTCTGGGAAGCCCCAC
AAAGTGACAAAGAAAGGCGACCTCGGTGTCGGCGTCCCGTACATGTCCAG
CACCCTCCAAGTTTCGCCTGGAGTGGAAAAAAACCGTCCACAGGCCGGGA
AGAACTTCACCGAGCACCAGGTAAGTCTGGAATCACCACGAGGCGTGCGA
CGCCCACgagctccctcccgcacgtgcctgccgccttcccccctccgcaC
GGTGCTTCCTTTCGGGGTCTCACAAGATCTGTCAAACTTATCTACCGGAC
AGGAGGAGTGGACCTGGTACGACGGTCTCCGCTTcggggagaagagcaag
atGAACATGTATTTCTATGGAACACTGCTGGACAAGACGCAGAAGGACGA
GCCGGCGGGCCGAAGCATCCACCAGGTCTACCAGGCAGACGCGGTCTCGG
CCCTGACCTCACTCAGCGCCACGCACTGGGAAGATTTCCACACCTACCGG
CTGGAGTGGATGCCCGGGCCGGAGGGGTATCTGGCCTGGTACTTGGACGG
AGAGATGCTTTACGACGTCCCTGCTTCGGCCCTTTCGAACGTGACGGGCG
CGCAAATCCCAGTGGAGCCCTCCTACGTGATTTTGAACACGGCTGTCTCT
ACAACTTGGGGGTTTCCGGAAACCTGCCCCGCTGGTTGCGCCTGCACGTG
CTTCGATTGCGCGAAGCCGGAGTGTCAGTGCGGCCTCCCCGAAGGCTTGT
GCGAGAGTCTCCCGGCCTCCATGCTGGTCGACTACGTCCGAATCTACCAG
CTCGAGGATGATGAGAGGCATTTCCTCGGCTGTAACCACCCGAAATTCCC
CACGCGGAAATTCATCCAGGCACACCGCTGGCGGTACCAACGGTAggagt
cctccctccctccctcccttttccctccctccccccgcatgTCTTCCCCC
GATTTTGCTCTTGGCTCGATGCGGGCGACAGGCTACTGAGTAAGAGCACA
TGGACCTGTCTGTCCGTCATCCGTCATTTTTATCTTGACACCTACCTCGT
CGCTCTGCGGCTCCTTCCTGTgtcccgttcctccctcgttttctCAGCGA
TCATGAGAAGGTGCCTCTAAAGCCTGTCCATCGAGGCAAAGGAAAATGCG
CGAATAACGCAGACTGCAATCCGGGGGGCTCCTGCAACCGAAGAAGGAAA
TGTGTCTGCCACGACGGGTGGACCGGGCCCCagtatggagggagggaggg
agggagggagggagggagggagggagggaagggggggaccGGAGAAGGGA
ACAAGAGAGAGAAAACGAGGGGCACATGTGTAAATGGCGAGAAAGGTGAC
GAATGTGGGCGAGGCAGAAAGGCTGACACCGGGACTCATGTGTTGATGAT
TTGGAGAGCGATGCCCCCCCTGATCTTCCTaccctgcctctttctctcct
tcattctcccttccttgccccccccctcctctcttccagcTGCAAACAAA
AAGACTACCACGACGACAACGTGCGGGGAAGGGTTTTCCTCCACTTTCAA
CTTCCAGGTCGCTTTCCTGCCAGCTTGGTCGCTGCCCTCTCCACTTTAGG
GGCAGTCCTGATAGGGGCCGTTTTGGTCTGGGGCCGGgcacgggagaggg
aggaggaggaggaacgacggagggaagaggaaacacAGGAACAGATTGGT
CGATAGGGTTGGCAGCCgtgtggaaggggggggacaagaaggaggtgatC
TTTTTCGGTATTGCCCGTAGGGTTGCGTAGGGGGTTGCAGGAGTGGGATG
GAGACAAAGGTAGACATTGGGGGCGAGAAGCTCGGAGGGATGGACGGAGA
CTTTGGGATGGACGAAGTAAAGTATGCTTTTTGAAAATGCGAACGGGATT
TGTTAGGGACCTCACGGGTCTGTGCACGTTATGAGcgaagggatgggagg
ggggggggggtggggagggaaagagagaaacgTGGTAAAATAGTGTATGT
AGTGGGGGCAGGATTGAAGACCATTGCGAGCATGGCAAGTCAGCAGAAGA
TagagggtgagggggggggggggcacgacTCAAGGacttgacgaggaggg
ttAATCCACAGTAGGAGTTCGGTGGGAGAACCGTGACGACAGCCTAAACA
TCTATGCAAAAGATGTCGCGACGCCGGGCAGCTGGGGGCAAAGGGATGTG
GAGGGCCTCGATGCGAAATTTGATCAAGGGAAAGAATGcacaggaggcag
agaatTGTTGCTTTCTGCAGGGCATTGAGTGCTGCTCGTCCCTGAACGCG
GAAGCGTAGAATGGACTCAGCTCCCGCCTCACTTTTCTCC

Coding sequence (CDS) from alignment at CM002469.1:77637..80226+

>rna6613 ID=rna6613|Name=rna6613|organism=Nannochloropsis gaditana|type=CDS|length=5256bp|location=Sequence derived from alignment at CM002469.1:77637..80226+ (Nannochloropsis gaditana)
ATGTCCGCCTGCGACCGGACCACGCATTGGGACCTACAACAAAACCAGGG
CCGGGGCGCCACGGAGATTGACATCATGGAGGCAATGTCTGGGAAGCCCC
ACAAAGTGACAAAGAAAGGCGACCTCGGTGTCGGCGTCCCGTACATGTCC
AGCACCCTCCAAGTTTCGCCTGGAGTGGAAAAAAACCGTCCACAGGCCGG
GAAGAACTTCACCGAGCACCAGGAGGAGTGGACCTGGTACGACGGTCTCC
GCTTcggggagaagagcaagatGAACATGTATTTCTATGGAACACTGCTG
GACAAGACGCAGAAGGACGAGCCGGCGGGCCGAAGCATCCACCAGGTCTA
CCAGGCAGACGCGGTCTCGGCCCTGACCTCACTCAGCGCCACGCACTGGG
AAGATTTCCACACCTACCGGCTGGAGTGGATGCCCGGGCCGGAGGGGTAT
CTGGCCTGGTACTTGGACGGAGAGATGCTTTACGACGTCCCTGCTTCGGC
CCTTTCGAACGTGACGGGCGCGCAAATCCCAGTGGAGCCCTCCTACGTGA
TTTTGAACACGGCTGTCTCTACAACTTGGGGGTTTCCGGAAACCTGCCCC
GCTGGTTGCGCCTGCACGTGCTTCGATTGCGCGAAGCCGGAGTGTCAGTG
CGGCCTCCCCGAAGGCTTGTGCGAGAGTCTCCCGGCCTCCATGCTGGTCG
ACTACGTCCGAATCTACCAGCTCGAGGATGATGAGAGGCATTTCCTCGGC
TGTAACCACCCGAAATTCCCCACGCGGAAATTCATCCAGGCACACCGCTG
GCGGTACCAACGCGATCATGAGAAGGTGCCTCTAAAGCCTGTCCATCGAG
GCAAAGGAAAATGCGCGAATAACGCAGACTGCAATCCGGGGGGCTCCTGC
AACCGAAGAAGGAAATGTGTCTGCCACGACGGGTGGACCGGGCCCCagta
tggagggagggagggagggagggagggagggagggagggagggaaggggg
ggaccGGAGAAGGGAACAAGAGAGAGAAAACGAGGGGCACATGTGTAAAT
GGCGAGAAAGGTGACGAATGTGGGCGAGGCAGAAAGGCTGACACCGGGAC
TCATGTGTTGATGATTTGGAGAGCGATGCCCCCCCTGATCTTCCTaccct
gcctctttctctccttcattctcccttccttgccccccccctcctctctt
ccagcTGCAAACAAAAAGACTACCACGACGACAACGTGCGGGGAAGGGTT
TTCCTCCACTTTCAACTTCCAGGTCGCTTTCCTGCCAGCTTGGTCGCTGC
CCTCTCCACTTTAGATGTCCGCCTGCGACCGGACCACGCATTGGGACCTA
CAACAAAACCAGGGCCGGGGCGCCACGGAGATTGACATCATGGAGGCAAT
GTCTGGGAAGCCCCACAAAGTGACAAAGAAAGGCGACCTCGGTGTCGGCG
TCCCGTACATGTCCAGCACCCTCCAAGTTTCGCCTGGAGTGGAAAAAAAC
CGTCCACAGGCCGGGAAGAACTTCACCGAGCACCAGGAGGAGTGGACCTG
GTACGACGGTCTCCGCTTcggggagaagagcaagatGAACATGTATTTCT
ATGGAACACTGCTGGACAAGACGCAGAAGGACGAGCCGGCGGGCCGAAGC
ATCCACCAGGTCTACCAGGCAGACGCGGTCTCGGCCCTGACCTCACTCAG
CGCCACGCACTGGGAAGATTTCCACACCTACCGGCTGGAGTGGATGCCCG
GGCCGGAGGGGTATCTGGCCTGGTACTTGGACGGAGAGATGCTTTACGAC
GTCCCTGCTTCGGCCCTTTCGAACGTGACGGGCGCGCAAATCCCAGTGGA
GCCCTCCTACGTGATTTTGAACACGGCTGTCTCTACAACTTGGGGGTTTC
CGGAAACCTGCCCCGCTGGTTGCGCCTGCACGTGCTTCGATTGCGCGAAG
CCGGAGTGTCAGTGCGGCCTCCCCGAAGGCTTGTGCGAGAGTCTCCCGGC
CTCCATGCTGGTCGACTACGTCCGAATCTACCAGCTCGAGGATGATGAGA
GGCATTTCCTCGGCTGTAACCACCCGAAATTCCCCACGCGGAAATTCATC
CAGGCACACCGCTGGCGGTACCAACGCGATCATGAGAAGGTGCCTCTAAA
GCCTGTCCATCGAGGCAAAGGAAAATGCGCGAATAACGCAGACTGCAATC
CGGGGGGCTCCTGCAACCGAAGAAGGAAATGTGTCTGCCACGACGGGTGG
ACCGGGCCCCagtatggagggagggagggagggagggagggagggaggga
gggagggaagggggggaccGGAGAAGGGAACAAGAGAGAGAAAACGAGGG
GCACATGTGTAAATGGCGAGAAAGGTGACGAATGTGGGCGAGGCAGAAAG
GCTGACACCGGGACTCATGTGTTGATGATTTGGAGAGCGATGCCCCCCCT
GATCTTCCTaccctgcctctttctctccttcattctcccttccttgcccc
ccccctcctctcttccagcTGCAAACAAAAAGACTACCACGACGACAACG
TGCGGGGAAGGGTTTTCCTCCACTTTCAACTTCCAGGTCGCTTTCCTGCC
AGCTTGGTCGCTGCCCTCTCCACTTTAGATGTCCGCCTGCGACCGGACCA
CGCATTGGGACCTACAACAAAACCAGGGCCGGGGCGCCACGGAGATTGAC
ATCATGGAGGCAATGTCTGGGAAGCCCCACAAAGTGACAAAGAAAGGCGA
CCTCGGTGTCGGCGTCCCGTACATGTCCAGCACCCTCCAAGTTTCGCCTG
GAGTGGAAAAAAACCGTCCACAGGCCGGGAAGAACTTCACCGAGCACCAG
GAGGAGTGGACCTGGTACGACGGTCTCCGCTTcggggagaagagcaagat
GAACATGTATTTCTATGGAACACTGCTGGACAAGACGCAGAAGGACGAGC
CGGCGGGCCGAAGCATCCACCAGGTCTACCAGGCAGACGCGGTCTCGGCC
CTGACCTCACTCAGCGCCACGCACTGGGAAGATTTCCACACCTACCGGCT
GGAGTGGATGCCCGGGCCGGAGGGGTATCTGGCCTGGTACTTGGACGGAG
AGATGCTTTACGACGTCCCTGCTTCGGCCCTTTCGAACGTGACGGGCGCG
CAAATCCCAGTGGAGCCCTCCTACGTGATTTTGAACACGGCTGTCTCTAC
AACTTGGGGGTTTCCGGAAACCTGCCCCGCTGGTTGCGCCTGCACGTGCT
TCGATTGCGCGAAGCCGGAGTGTCAGTGCGGCCTCCCCGAAGGCTTGTGC
GAGAGTCTCCCGGCCTCCATGCTGGTCGACTACGTCCGAATCTACCAGCT
CGAGGATGATGAGAGGCATTTCCTCGGCTGTAACCACCCGAAATTCCCCA
CGCGGAAATTCATCCAGGCACACCGCTGGCGGTACCAACGCGATCATGAG
AAGGTGCCTCTAAAGCCTGTCCATCGAGGCAAAGGAAAATGCGCGAATAA
CGCAGACTGCAATCCGGGGGGCTCCTGCAACCGAAGAAGGAAATGTGTCT
GCCACGACGGGTGGACCGGGCCCCagtatggagggagggagggagggagg
gagggagggagggagggagggaagggggggaccGGAGAAGGGAACAAGAG
AGAGAAAACGAGGGGCACATGTGTAAATGGCGAGAAAGGTGACGAATGTG
GGCGAGGCAGAAAGGCTGACACCGGGACTCATGTGTTGATGATTTGGAGA
GCGATGCCCCCCCTGATCTTCCTaccctgcctctttctctccttcattct
cccttccttgccccccccctcctctcttccagcTGCAAACAAAAAGACTA
CCACGACGACAACGTGCGGGGAAGGGTTTTCCTCCACTTTCAACTTCCAG
GTCGCTTTCCTGCCAGCTTGGTCGCTGCCCTCTCCACTTTAGATGTCCGC
CTGCGACCGGACCACGCATTGGGACCTACAACAAAACCAGGGCCGGGGCG
CCACGGAGATTGACATCATGGAGGCAATGTCTGGGAAGCCCCACAAAGTG
ACAAAGAAAGGCGACCTCGGTGTCGGCGTCCCGTACATGTCCAGCACCCT
CCAAGTTTCGCCTGGAGTGGAAAAAAACCGTCCACAGGCCGGGAAGAACT
TCACCGAGCACCAGGAGGAGTGGACCTGGTACGACGGTCTCCGCTTcggg
gagaagagcaagatGAACATGTATTTCTATGGAACACTGCTGGACAAGAC
GCAGAAGGACGAGCCGGCGGGCCGAAGCATCCACCAGGTCTACCAGGCAG
ACGCGGTCTCGGCCCTGACCTCACTCAGCGCCACGCACTGGGAAGATTTC
CACACCTACCGGCTGGAGTGGATGCCCGGGCCGGAGGGGTATCTGGCCTG
GTACTTGGACGGAGAGATGCTTTACGACGTCCCTGCTTCGGCCCTTTCGA
ACGTGACGGGCGCGCAAATCCCAGTGGAGCCCTCCTACGTGATTTTGAAC
ACGGCTGTCTCTACAACTTGGGGGTTTCCGGAAACCTGCCCCGCTGGTTG
CGCCTGCACGTGCTTCGATTGCGCGAAGCCGGAGTGTCAGTGCGGCCTCC
CCGAAGGCTTGTGCGAGAGTCTCCCGGCCTCCATGCTGGTCGACTACGTC
CGAATCTACCAGCTCGAGGATGATGAGAGGCATTTCCTCGGCTGTAACCA
CCCGAAATTCCCCACGCGGAAATTCATCCAGGCACACCGCTGGCGGTACC
AACGCGATCATGAGAAGGTGCCTCTAAAGCCTGTCCATCGAGGCAAAGGA
AAATGCGCGAATAACGCAGACTGCAATCCGGGGGGCTCCTGCAACCGAAG
AAGGAAATGTGTCTGCCACGACGGGTGGACCGGGCCCCagtatggaggga
gggagggagggagggagggagggagggagggagggaagggggggaccGGA
GAAGGGAACAAGAGAGAGAAAACGAGGGGCACATGTGTAAATGGCGAGAA
AGGTGACGAATGTGGGCGAGGCAGAAAGGCTGACACCGGGACTCATGTGT
TGATGATTTGGAGAGCGATGCCCCCCCTGATCTTCCTaccctgcctcttt
ctctccttcattctcccttccttgccccccccctcctctcttccagcTGC
AAACAAAAAGACTACCACGACGACAACGTGCGGGGAAGGGTTTTCCTCCA
CTTTCAACTTCCAGGTCGCTTTCCTGCCAGCTTGGTCGCTGCCCTCTCCA
CTTTAG

Synonyms

Publications