rna6607, rna6607 (mRNA) Nannochloropsis gaditana

Overview
Namerna6607
Unique Namerna6607
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length760
Alignment locationCM002469.1:62188..63307 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_102131g1.2274.mrna
Orig protein idgnl|cribi|Naga_102131g1.2274
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:62188..63307 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_102131g1gene6387Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6607rna6607-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24082.1cds6591Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6607 ID=rna6607|Name=rna6607|organism=Nannochloropsis gaditana|type=mRNA|length=760bp
ATGGGAGGGAGGGAAGGAGGGAGGGAAGGAGGAGGGCCTGGAGATTTTGC
GGGCGGCCTCGGCGATTCTGACCAGTCTGAAGAATGGCGAAGAGCCAGTG
GCGTGGCCGGCGTTGCCGCCCTTGGAAGAAGGGGAGGAGGAGGAAGAGGA
GGAGGGGGAGGGAGGGAGGGAGGAAGAGAGGGAGGGGCAGGAAGGGGAAG
TGCGGGCGGCGGCGGCGGCGGCGGCGGAGAACGCCGAGAAAGAGCGGGTG
ATACGAGCGTTGGTGCAGAAAACAGGGGAGGCGGGGATGGGGTTGGGGGG
GGAACTGCGGTGCCTCCCTCTTCTGCCACGCTTCCTTCCCTCCCAGAGGG
AGCCAAGGACGACAAAGAGGGAACGCCGGGGAAGGACACAGAGGGATTGG
CAGCACCACCGCCGGCGTACCCGCAGTCCTTTCGCGAGATCCTGGAGATG
ACCGAGCGGGGGGAGACACCCCCAGGCATTGTCACGGTCGACTCTCGCCT
GTCGCAAGACGTGGGGGAACTAGGGACTCTGTCTGTGCCAGCATCCGCGG
AAGGGATGTCTACGCCCCCGAAAAAGCCGTGGGAGGCAGAGAAGGAGGAG
GTAGGAAGAGGGGGGGAGGAGGGGAGGGAGGAGGGGAGCAGAGCAAGGGA
GGGTGGGACGGAAGGGGAGCTGGAAGAAGAAAGGCGGTTGCCAGCGGAGG
GAAAGCAGGCTTACGGCGTGTAATTAGGAAAACCAATCACCAGGAAGTGT
GTGTGCATGC
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protein sequence of rna6607

>rna6607-protein ID=rna6607-protein|Name=rna6607|organism=Nannochloropsis gaditana|type=polypeptide|length=292bp
PMRLSETEVTEEVIAAAVEALLCESEEQETPPSLPPSLPPSLPPSPASSP
TSPPTTLITTLAPTPVAVSPSFPSPPSSSSPPPLSPSTAQEVPALNDVKE
VGDGDREDGDALRRYKIRTLLLEEELRGTRQSLANVLEGLGEAREHESSL
ATALARAQRATEEAEKLLEEEGRGYQGVVTALTEECHALQGQVQEKEFAR
LLAEEATQKWKTRYRQDVRQMNEEVLALDEVVYGLEKEQERRQAVWAAAE
MKYKRQLSAMRKRNLELQEKLKEVGGGGRTVGGREGGREGRM
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mRNA from alignment at CM002469.1:62188..63307+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6607 ID=rna6607|Name=rna6607|organism=Nannochloropsis gaditana|type=mRNA|length=1120bp|location=Sequence derived from alignment at CM002469.1:62188..63307+ (Nannochloropsis gaditana)
CCGATGCGATTGAGTGAGACGGAGGTGACAGAGGAAGTGATTGCGGCGGC
GGTAGAAGCGCTTCTTTGCGAAAGCGAGGAACAGgagaccccgccctccc
tcccgccctccctcccgccctccctcccgccctcccccgcttcctccccc
acgtcccccccTACCACCCTCATCACCACCCTCGCGCCCACGCCCGTCGC
Ggtatccccctcctttccttcccctccctcctcctcttcgcctccccctc
tgtctccctccacggcccaAGAAGTGCCTGCCCTGAACGACgtcaaggag
gtgggggatggtgaccgggaggacggggacgcgCTCCGGCGCTACAAGAT
CCGGACCCTCCTTCTAGAAGAAGAACTTCGGGGCACCCGGCAGTCACTGG
CTAACGTTCTAGAAGGGTTGGGGGAGGCACGAGAGCACGAGtcctccctg
gccacggcCCTGGCCCGCGCCCAACgcgcgacggaggaggcggagaagct
tctagaagaggaaggtcggGGCTACCAGGGGGTGGTGACCGCGCTGACGG
AGGAGTGCCATGCGCTCCAAGGGCAGGTGCAGGAGAAAGAGTTTGCCCGt
ttgctggcggaggaggccacgCAGAAATGGAAAACGCGCTACCGACAGGA
CGTGCGGCAGATGAACGAGGAAGTGCTGGCTCTGGACGAGGTTGTCTACG
GgttggaaaaggagcaggagcggcgACAAGCGGTGTGGGCGGCCGCCGAG
ATGAAATACAAGCGTCAGCTGTCCGCCATGCGGAAGCGAAATTTGGAGCT
GCAGGAGAAATTGAAGGAGgtaggtggggggggaagaacggtgggaggga
gggagggagggagggagggaaggatgtgaTGGTGTATTGCCCTCCACAAG
GTTCACGCGACAGTTGTTCAAAGACCTCCGCTCTCTTGTCGCATCCGCTT
TTTCGGCCTTTTTCCCGGGTCAAACTTTTAACGTCACATTtaaattcaaa
atttcaaaccGGGGGACAGATTTCcctgatggaggcggagtcTCTGGAAG
TTGTGGACCGGCTCGAGCGGCAGTTGGCGAGCCTTGGGGCTTCTAGCGCA
GGTTaccgaggaaaggaggg
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Coding sequence (CDS) from alignment at CM002469.1:62188..63307+

>rna6607 ID=rna6607|Name=rna6607|organism=Nannochloropsis gaditana|type=CDS|length=879bp|location=Sequence derived from alignment at CM002469.1:62188..63307+ (Nannochloropsis gaditana)
CCGATGCGATTGAGTGAGACGGAGGTGACAGAGGAAGTGATTGCGGCGGC
GGTAGAAGCGCTTCTTTGCGAAAGCGAGGAACAGgagaccccgccctccc
tcccgccctccctcccgccctccctcccgccctcccccgcttcctccccc
acgtcccccccTACCACCCTCATCACCACCCTCGCGCCCACGCCCGTCGC
Ggtatccccctcctttccttcccctccctcctcctcttcgcctccccctc
tgtctccctccacggcccaAGAAGTGCCTGCCCTGAACGACgtcaaggag
gtgggggatggtgaccgggaggacggggacgcgCTCCGGCGCTACAAGAT
CCGGACCCTCCTTCTAGAAGAAGAACTTCGGGGCACCCGGCAGTCACTGG
CTAACGTTCTAGAAGGGTTGGGGGAGGCACGAGAGCACGAGtcctccctg
gccacggcCCTGGCCCGCGCCCAACgcgcgacggaggaggcggagaagct
tctagaagaggaaggtcggGGCTACCAGGGGGTGGTGACCGCGCTGACGG
AGGAGTGCCATGCGCTCCAAGGGCAGGTGCAGGAGAAAGAGTTTGCCCGt
ttgctggcggaggaggccacgCAGAAATGGAAAACGCGCTACCGACAGGA
CGTGCGGCAGATGAACGAGGAAGTGCTGGCTCTGGACGAGGTTGTCTACG
GgttggaaaaggagcaggagcggcgACAAGCGGTGTGGGCGGCCGCCGAG
ATGAAATACAAGCGTCAGCTGTCCGCCATGCGGAAGCGAAATTTGGAGCT
GCAGGAGAAATTGAAGGAGgtaggtggggggggaagaacggtgggaggga
gggagggagggagggagggaaggatgtga
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Synonyms
Publications