rna6603, rna6603 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6603
Unique Name	rna6603
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1801
Alignment location	CM002469.1:49531..52181 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_101344g2.4498.mrna
Orig protein id	gnl\|cribi\|Naga_101344g2.4498
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002469.1	supercontig	CM002469.1:49531..52181 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_101344g2	gene6383	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24086.1	cds6587	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6603	rna6603-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002469.1:49531..52181-
coding sequence from alignment at CM002469.1:49531..52181-

mRNA sequence

>rna6603 ID=rna6603|Name=rna6603|organism=Nannochloropsis gaditana|type=mRNA|length=1801bp
TACGAGGTAGGGGGCGAGGGTGGGTATGGCGGAGGAGAGGTGGACGGAGG
AAGGGGGGGAGGCGGGGGCGACGGCCTCTGGACCTTGGACAATCTGACCA
ACGGCGTGGACATGCTGAGTCTGGAAAGGGAGGGGAGGACGCCGGGAGGA
AAGGAAGGAGGACGCCAGGCTGCCGCTTCGGCCTTGGCCCCTCCGGCGTT
GTGGATGGAGGGCGGGCCGGAGAGCAGCCTGGGAGGGGGCTATGCCTATG
GCCTGGGGGGGGGTGAGCATGCACGAACAGCAGCTAGGCTACTGGAGCTC
TCCCGCCACGGCGCCTGCGGCCGCGTCTTTGGCCTACCCGAGCTACCATT
TTTCTCCTTCTTCCCACCCTCCTCCCCATTTCCCGCCCACGTCGACCGTG
CCGCCCTCTGCCGCTTCCTCCGCCGGCACCTACCCCGCCCCTTCCTCCCT
CTCCTCCTCCTCCTCCACCTCTTCGGCCCCGGCGCCTTGGTCCTTCGCCA
CGGACATTCCCTCCTTCGCCGGGACCAGCAAACCTCTCCCCTTGACCAAA
AGCTCGCCCTCCCTCCCGTCCTCCCTCCCTTCCTCGGCCGCGTCCTCGTC
GGAGGCCTTGGCGGCGAAAGGGGAGGAGGGAGGGAAGGTGGGAGGGCGGG
AGGGAGGGGATTAGGGGCAGAGAGGGAGGTGGGGGAAGGAGGCTGAGGGT
TAGAAGGGAGAGCAGGAAGAGGGGGATCGAGGAAGGGAGAGGAGGAGGAG
AGGGGGATTGAGGAAGGGAGGGAGGAGGAGAGGGGGATCGAGAAAGGGAG
GGAGATCGAGAAAGGGAGGGAGGCGTGGACGAGTATGCACAAGAAATAAG
GAGGTACATGCCTGGGGAAGTAAGTCTATGCCTGTGATTAGGTGGGAAGG
GAAGGAAAGAGGGAGGGAGGGAGGGAAGGAGGGAGGGGCAGCATAGGAAA
GATGCTCGAGGGAAAGGAAGGAAAGAGGGAGGGAGGGAGGGAAGGAGGGA
GGGGCAGCATAGGAAAGATGCTCGAGGGAAAGGAAGGGAGGTGGGCGTAT
CCGCACGGAGGAAGGTATAGAAAGGCGGGAAGGTGGTGGTGCTCCTGGGA
GTGACAGGGGCGAAACCGAAGGGATGAATGTAAGAGCGAGTGAGAATCAC
TGAGGAAGACGCAGGGGGCGGGGGTCTGAGAGGGAAAATAAGGAAAAGGG
TGGAAGGAGGGGTGGAGGGCAACTGTTGGAAGGAGGGAAGGAGGGTGGCT
GATGAAGGGGTGGATCTTTTTGTTCTTTTGGCCGTGCCGTCCCATCGCTC
TCTCCAGGTGGACGTTGACGGTGCATGGACTCTATTTCGAGGAAGAAATT
CACGCGACAACGAGGGACACAAGGGGGAAGAGCGATAGAGCGAGCCTGCC
TTCACGCAGGGGAATGAAGGCTCGAGGGAGGAGAATAAATCTGGGGAAGG
GGAAGGAGGGCAAGGTTGGTCTATGGAGGTCTCGTCGCCAGGAAAAAAGA
GGGGGGCAGGGAGCGGCTCGAATGGAGGAGGAAGAAGGGAAAGGGGCCGC
GCAATCGCCTGGGAGGGAGCGTGGGGGGACGGAACGAATCGGGGGGGGAG
GAAGAAAACATATCAAATTGCCACCGTGTTTGTCTTCAATGACGCAAGAT
CCTTTCTCTTCCCGAGCAACTGGGAGGAGGCGGCGTTGAATGCTTCCGCG
TAACGCTAGGCCGTCGAAATCAAATTAAACAAGAATATGCGTTTTCCCCT
TGCACGAGGGGTGATAAATTATGAAGGAAGTACCACACCACGGACAAGAG
C

protein sequence of rna6603

>rna6603-protein ID=rna6603-protein|Name=rna6603|organism=Nannochloropsis gaditana|type=polypeptide|length=313bp
MHQEEVQALGAQRQRLEAQGTLLPPYRLPFHHYLPPLPPFALHPSFRPAL
LPLLLLLLHLPSLQPCQPRRPRLFSLPEHPPRGRKGTAPFLFPFSLLLFP
FLPPPFQQRHGQGGPQRPPSLPPSLRPSLRPSFAPPTSLPTRHDPILGIC
AREKGRPILSHTSHRGFPSALLRLSAPSNLAPGRRVSSRPSLRRLLRLPF
TLLLLFIFFFLLFLQHLLLLLLLLLLHHLGSGSQAAPKPPSAPGTPLVHR
GARGRNGKGGGRGGGAGRGGDLLFHSVAAHPVPLFLLTRCQSFLVVLLLP
HTGNTVSFPIHRR

mRNA from alignment at CM002469.1:49531..52181-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6603 ID=rna6603|Name=rna6603|organism=Nannochloropsis gaditana|type=mRNA|length=2651bp|location=Sequence derived from alignment at CM002469.1:49531..52181- (Nannochloropsis gaditana)
ATGCATCAAGAGGAGGTTCAGGCACTGGGTGCTCAACGCCAACGGCTCGA
AGCTCAGGGGACGCTTCTTCCTCCCTACCGGCTCCCATTCCACCACTACC
TTCCTCCGCTTCCTCCCTTTGCCCTTCACCCCTCCTTCCGCCCTGCCCTC
CTCCCCCTCCTCCTCCTCCTCCTCCACCTGCCCTCCCTCCAACCGTGCCA
ACCGCGCCGCCCTCGCCTCTTCTCGCTCCCGGAGCATCCTCCGCGCGGTC
GCAAAGGGACCGCACCATTCCTCTTTCCCTTCTCCCTCCTCCTCTTTCCC
TTTCTTCCTCCGCCCTTCCAACAACGGCATGGGCAGGGAGGACCTCAGAG
ACCTCCCTCCCTCCCTCCCTCCCTCCGCCCCTCCCTCCGCCCCTCCTTCG
CCCCTCCCACCTCCCTCCCCACCCGGCACGACCCGATCCTGGGCATCTGC
GCGCGCGAAAAAGGCCGCCCGATTCTCAGCCACACGTCGCATCGAGGCTT
TCCGAGCGCCCTCCTGCGGCTTTCGGCCCCCAGCAACCTCGCCCCTGGAC
GCCGCGTCTCTAGCCGCCCTTCTCTCCGGCGTCTCCTTCGTCTTCCCTTT
ACGCTCCTCCTTCTCTTTATCTTCTTCTTCCTCCTCTTCCTTCAGCACCT
CCTCCTCCTCCTCCTCCTCCTCCTCCTCCACCATCTTGGAAGTGGATCCC
AAGCTGCTCCGAAGCCGCCGTCTGCCCCCGGCACTCCCCTCGTCCACCGT
GGCGCCCGAGGAAGAAACGGGAAAGGAGGAGGAAGAGGAGGAGGAGCAGG
TAGGGGAGGAGACCTCCTTTTTCACTCCGTTGCCGCCCACCCAGTGCCGC
TCTTCCTGTTGACTCGGTGTCAAAGTTTTCTCGTCGTCCTCCTCCTCCCG
CACACGGGCAACACCGTTTCCTTTCCTATTCACAGACGATGAAGAGGAGC
TGGACTTTTTGTTGGCCATTCCCGGTGGATATTTGAGTCTCTGTGTGTGA
AAAGGTAACAGGAAACGTGAGTGTGGCATGCCGATGTCGTGGGGAGGAGG
TAGAAGCGTGCGTGGTTGATGACCACGCGGTAGGCCTCAATACAACCACA
CAAAGAGGCATCGGGAAGCGCTGCGGGAGAACCAAGACGCACATGTTCTA
CCTCAGTCTTGCCTACGGCTGAGGGTCCGTGGCCGCGGACGCTTATGAGG
GAATATAGCAAATATATTACATGATAGGCTCGAGGAATGGATTCACACCC
GCAGATTACTACTAGCGGCTGGCATACGAGTCTTTCCTCTTAGAGGTGAA
TCCTTTCGGACGAAAACCACGAGACCAGTGGAGAACACCAAGCCCACGTG
AGCACGAGGCATCAAGACGCGCTTTTTGAGGCGTCCCTCCGCTCGTCTCG
GTTCCTTCTAGTGGTGTCGATAAGCCAGCGAGAAGGCTCGCTTAAGCCTC
TTCAAACTTACAAGGCGTGAATCTATGTCCATGTACGAAGGTGGGATAAG
TTTGTGGCAGTCCTTTGCCCTGCACGCGGTGTGTCAACACACTTAAGACA
GACGCCTTTGATTTCACCTTACAACCTTGTCTTTGTGACCTGCTCTTGTG
TAAATTCGTCCTATCTCCGAATAAAGGCGAGGAACAAGGGTCCAGTGCCA
ACGGGCTTAGGCTGTCCACTTGCACGCGCATATACACGGAAATGGGTAGC
ATTTTCAAATTTGCAGGCTACCATACATGTGAGAATGGAACATTGCCTGT
CTTTGCTTCATGAAACCCTTTATTTTCATTGTCCATGATCCAGACTGGGA
GGATGCCTCGTCTTCTCTTTTCCTTCCTCCCCTTCCTATACCTCGCGGCC
GTCCTCCTACCGCTGCCAACCAAAGCCTTGTATTCTGCTCGTTCTGATGT
GGTGCAACTGACGGAGGAAAATTTCAAGGTGGGAAAAGGAGCGTGGCCAA
TGTGATGTATGAACAGGCATGGCAGGGAGGGAATTCGATGTCGTCTGACT
CTGGTCCCGGCGTCGGTGGCGATCCCGCAGGAAAAAGTGCTCAAGGCCGA
AGGTGTGGTGCTGGTGGAATTCTACGCAGCTTGGTGTGGACACTGGTACG
TCCATGGCATCCCTCTTGTCTCCTACTGAGGGCCCTGCTCCCCCTCGCCT
CTACCCCCCCCTTCACTCGCCTCCGCCCTTCCTCCCTCCCCTTTTCCCTC
CTTCCCTCCCCCCTCCGCCCTCACCAGCAAGAACCTGGTGCCCGAGTGGG
AGAAAGCTGCGCAGGCCTTGAAAGGAGTGGTGACGGTGGCGGCCGTGGAT
GCCTCAGTTCATCAAGCTCTGGGTCAGAAATACGACGTCAAGGTGGGGAG
GGAGGGAGGGAGGGAGGGAGGGAGAGAGAATGGGAGGGAGGAGAAAACGT
GGAGCATCTTTCCTGAGTAAAGACAGGCGGGGGAGGGGGATTGGGGCATT
CTCCCCGGCGGGGAATGGGCTCGGCGTTCTGCCGGGGGCTCTCTCTCTTC
CCGGTCTCGCTACGACCCGCGTCCTCGCTGGGAAACTCAAGCCCAAGCCT
TCCTTCCCACCCCCCTCGTGCTCCTGACGGTGGCTACACAGGGCTTCCCC
ACGATCAAGGTCTTCGGGGGCGACAAGCGGAAGCCGGTCGACTATCAGGT
A

Coding sequence (CDS) from alignment at CM002469.1:49531..52181-

>rna6603 ID=rna6603|Name=rna6603|organism=Nannochloropsis gaditana|type=CDS|length=942bp|location=Sequence derived from alignment at CM002469.1:49531..52181- (Nannochloropsis gaditana)
ATGCATCAAGAGGAGGTTCAGGCACTGGGTGCTCAACGCCAACGGCTCGA
AGCTCAGGGGACGCTTCTTCCTCCCTACCGGCTCCCATTCCACCACTACC
TTCCTCCGCTTCCTCCCTTTGCCCTTCACCCCTCCTTCCGCCCTGCCCTC
CTCCCCCTCCTCCTCCTCCTCCTCCACCTGCCCTCCCTCCAACCGTGCCA
ACCGCGCCGCCCTCGCCTCTTCTCGCTCCCGGAGCATCCTCCGCGCGGTC
GCAAAGGGACCGCACCATTCCTCTTTCCCTTCTCCCTCCTCCTCTTTCCC
TTTCTTCCTCCGCCCTTCCAACAACGGCATGGGCAGGGAGGACCTCAGAG
ACCTCCCTCCCTCCCTCCCTCCCTCCGCCCCTCCCTCCGCCCCTCCTTCG
CCCCTCCCACCTCCCTCCCCACCCGGCACGACCCGATCCTGGGCATCTGC
GCGCGCGAAAAAGGCCGCCCGATTCTCAGCCACACGTCGCATCGAGGCTT
TCCGAGCGCCCTCCTGCGGCTTTCGGCCCCCAGCAACCTCGCCCCTGGAC
GCCGCGTCTCTAGCCGCCCTTCTCTCCGGCGTCTCCTTCGTCTTCCCTTT
ACGCTCCTCCTTCTCTTTATCTTCTTCTTCCTCCTCTTCCTTCAGCACCT
CCTCCTCCTCCTCCTCCTCCTCCTCCTCCACCATCTTGGAAGTGGATCCC
AAGCTGCTCCGAAGCCGCCGTCTGCCCCCGGCACTCCCCTCGTCCACCGT
GGCGCCCGAGGAAGAAACGGGAAAGGAGGAGGAAGAGGAGGAGGAGCAGG
TAGGGGAGGAGACCTCCTTTTTCACTCCGTTGCCGCCCACCCAGTGCCGC
TCTTCCTGTTGACTCGGTGTCAAAGTTTTCTCGTCGTCCTCCTCCTCCCG
CACACGGGCAACACCGTTTCCTTTCCTATTCACAGACGATGA

Synonyms

Publications