rna6594, rna6594 (mRNA) Nannochloropsis gaditana

Overview
Namerna6594
Unique Namerna6594
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1064
Alignment locationCM002469.1:29488..30928 -

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Properties
Property NameValue
ProductBulb-type lectin domain protein
Orig transcript idgnl|cribi|Naga_101202g1.63.mrna
Orig protein idgnl|cribi|Naga_101202g1.63
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:29488..30928 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101202g1gene6374Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24095.1cds6578Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6594rna6594-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6594 ID=rna6594|Name=rna6594|organism=Nannochloropsis gaditana|type=mRNA|length=1064bp
AGTTCGGGGACTTCGCCAATGGCGCTCAAATCGTCATCGACACTCTCATT
TCAGGAGGAGAAGCCAAGTGGCTCCGACAGTCAGGCCTCGTCCTCCTCCT
TCCCCACGGCTATGACGCCGCGGGCCCAGAGCATTCGTCCGGTCGCCTCG
AACGTTTCTTGCAGCTGAGCAACGACCACCCCTTCCCTCCCTCCCGCCCT
CCCTCCCACCCTCCTCCGGTTAACATGCACATCTTGAACTGCACGACTCC
GGCCCAGTACTTTCATGCCTTGCGGCGTCAGCTGCTTCGACCGTTTCGAA
AACCTTTGGTGCTGATGACGCCGAAGACACTCCTCCGGCACCCCAGCGCT
GTCTCTTCTTTGCCAGAGATGGAGATTGGCACGACCTTCCAACCTGTGCT
TGCCAGCACTCTCGATGGCCGCCCCTGGAAGGGGGGGCTGAAGGGCAGGG
AAGGGGACGAGAGGGAAGGAGGGAGGGAGGGAAGGCTTCCCCCCACAGTC
CTCCTGTGCTGTGGGAAAATCTACTACGACATTGTGAAGGACGCAGAGGG
GAGGAAGGATCTTGATCCTTCCCAAATTCTCCTCCTCCGCCTGGAAGAAC
TCTCGCCCTTTCCCCGCTCTGCCCTCGCCCCCTTCCTCCCCCCCGCCCTC
CCCCTTCCCTCCTCCCCCACCACATATTTTTGGGTACAAGAGGAACCCTG
GAATGCGGGCGCCTGGGCTTTTATCTCCTCCCACCTCCGTCCTTCCCTCC
CTGCCCTGACCTACATCGGCCCCCCCCCCTTGCCCACGCCCGCCGTGGGG
ACCAGGGAGGGCCATGCGGAGGAGCGAGAGAGGCTCTTGACGACGCTCTG
GGAGAACGTGAGGGAGGGCGGGGCAGCGGATCGATTGGACGAGGCGTAGG
AGGGAGGAGGTTTGGAGGGGGAGGGGCGATAGTTTTCTCGCTACTACTGT
CGGTCAAGCATCGATCTGACGAAACATCGACCGCTTTCGGCCCCGCATGT
GCAAAGAGCTCGGGGAAGAGATGTAACGAACATTCAAAAAGAAAACCCCG
ATCCTCCCTGACGT
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protein sequence of rna6594

>rna6594-protein ID=rna6594-protein|Name=rna6594|organism=Nannochloropsis gaditana|type=polypeptide|length=262bp
SSSSSSSSASHPAAADSKLLSLPPPTPADITPKVETALLAATAAGALEPI
HEDTKAEEASSPSSAPSSASPSSPSSWGKIPFPSLPLHLLTLPIFFCAFL
LGLFLLSALSSQSIILKEGDVLRPGDSLRYRCSFSDYFPAPSPSSSTPSS
SPACHDLDLVLGKDGVLSLYRDRMREKRALMWQSEGGKEGGSEGGYVATV
DERARLVVMREEGDVVWSSPRLLSKGGKEGREEGRAAAVLDGVMGGMYVM
DGAGQPTFATIW
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mRNA from alignment at CM002469.1:29488..30928-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6594 ID=rna6594|Name=rna6594|organism=Nannochloropsis gaditana|type=mRNA|length=1441bp|location=Sequence derived from alignment at CM002469.1:29488..30928- (Nannochloropsis gaditana)
TCCTCCTCCTCCTCCTCCTCCTCTGCCTCCCACCCCGCAGCGGCAGATTC
CAAGCTTTTGTCCCTCCCTCCTCCAACTCCTGCTGACATCACACCCAAAG
TCGAAACCGCCCTCCTCGCTGCCACCGCGGCCGGCGCCCTGGAGCCCATC
CACGAAGACACCAAGGCCGAAGAAGCGTCCTCCCCTTCCTCCGCCCCTTC
CTCCGCCTCGCCCTCTTCCCCTTCCTCGTGGGGCAAAATTCCGTTCCCTT
CCCTCCCCCTCCACCTCCTCACCCTTCCCATCTTCTTCTGTGCCTTCCTT
CTCGGCCTCTTCCTCCTCTCGGCCCTGTCTTCCCAATCCATCATCCTCAA
GGAAGGGGACGTCCTGCGTCCTGGTGACTCCCTCCGGTACCGGTGCAGCT
TCAGCGATTACTTCCCCGCTCCCTCCCCCTCTTCCTCTACCCCTTCCTCC
TCCCCTGCCTGCCACGACCTGGATCTGGTGCTGGGAAAGGACGGCGTTTT
GTCACTTTACCGGGACCGAATGCGGGAGAAACGGGCCTTGATGTGGCAGA
GCGAGGGCGGGAAGGAGGGCGGGAGCGAGGGCGGCTACGTGGCAACTGTG
GATGAAAGGGCCCGCCTGGTGGTGATGAGGGAGGAAGGGGACGTCGTGTG
GTCGTCGCCTCGGTTGTTGAGTAAGGGCGGGAAGGAGGGAAGGGAGGAAG
GGAGGGCAGCAGCAGTCCTGGATGGTGTCATGGGGGGAATGTACGTGATG
GACGGCGCAGGACAGCCCACGTTTGCGACCATCTGGTAGGGAGGGAGGGA
GGAAGGGGGGGAGGGCGAGGGCGGGGTGGGTGGTATACATAGGGAATAGT
GCCACGTGGCGAGGAAAGGCCGGGACGGGCGTGGTACAGGGAGGAAGGTG
GGGGGAGCGAAGACAAGTTTTGGGATCGCCGGGTCTTCTTTTACGGCGAC
TGACTGCCCTGCAGCGCGCTAGGAACATTCAAAGGCGTATGTAACGGGCC
ATTCAAAATTTTAAACCGAGGACAAGGAGGATTTTTTTGCAATTTGAAAG
TGCACGGCGATTATCGTAGTCTCTGCATATATTCACGCTCTGCCGCCTCA
TTGATAGTCTTGCCCTCATGGCAAGAGGAATCCCTCCCCCCCCACCCTGA
GAAATTTTAAAATTTAATTTAAACGACAAGTCATTTTTGGGGCGGTTAAA
TTTCTGCCCCCGCTGTATGGGTAGGTTAAGGAAAAAGGGAAGGCAGGGAG
CGTCGCAAGGCCTGCGAGACAGGATTGATTGCCATAAGGGGAGGGAAAGG
TAAGCAGTGGGATCAGCCCGTATGCTGAGGTAGCGGGGGAGGGAGGGAGA
GGAAGAGGCCGGATCCGTGAAGGCGATACTCCCAAGGGGATGGAAGCCTC
TGGAGCCATCATGAAGAAAAAACGGCTGTGTGGGGACACGT
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Coding sequence (CDS) from alignment at CM002469.1:29488..30928-

>rna6594 ID=rna6594|Name=rna6594|organism=Nannochloropsis gaditana|type=CDS|length=789bp|location=Sequence derived from alignment at CM002469.1:29488..30928- (Nannochloropsis gaditana)
TCCTCCTCCTCCTCCTCCTCCTCTGCCTCCCACCCCGCAGCGGCAGATTC
CAAGCTTTTGTCCCTCCCTCCTCCAACTCCTGCTGACATCACACCCAAAG
TCGAAACCGCCCTCCTCGCTGCCACCGCGGCCGGCGCCCTGGAGCCCATC
CACGAAGACACCAAGGCCGAAGAAGCGTCCTCCCCTTCCTCCGCCCCTTC
CTCCGCCTCGCCCTCTTCCCCTTCCTCGTGGGGCAAAATTCCGTTCCCTT
CCCTCCCCCTCCACCTCCTCACCCTTCCCATCTTCTTCTGTGCCTTCCTT
CTCGGCCTCTTCCTCCTCTCGGCCCTGTCTTCCCAATCCATCATCCTCAA
GGAAGGGGACGTCCTGCGTCCTGGTGACTCCCTCCGGTACCGGTGCAGCT
TCAGCGATTACTTCCCCGCTCCCTCCCCCTCTTCCTCTACCCCTTCCTCC
TCCCCTGCCTGCCACGACCTGGATCTGGTGCTGGGAAAGGACGGCGTTTT
GTCACTTTACCGGGACCGAATGCGGGAGAAACGGGCCTTGATGTGGCAGA
GCGAGGGCGGGAAGGAGGGCGGGAGCGAGGGCGGCTACGTGGCAACTGTG
GATGAAAGGGCCCGCCTGGTGGTGATGAGGGAGGAAGGGGACGTCGTGTG
GTCGTCGCCTCGGTTGTTGAGTAAGGGCGGGAAGGAGGGAAGGGAGGAAG
GGAGGGCAGCAGCAGTCCTGGATGGTGTCATGGGGGGAATGTACGTGATG
GACGGCGCAGGACAGCCCACGTTTGCGACCATCTGGTAG
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Synonyms
Publications