rna6590, rna6590 (mRNA) Nannochloropsis gaditana

Overview
Namerna6590
Unique Namerna6590
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2901
Alignment locationCM002469.1:15422..15774 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101802g2.9667.mrna
Orig protein idgnl|cribi|Naga_101802g2.9667
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:15422..15774 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101802g2gene6369Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6590rna6590-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24099.1cds6574Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6590 ID=rna6590|Name=rna6590|organism=Nannochloropsis gaditana|type=mRNA|length=2901bp
CCACTTTGATTTTCCAAGTGCGATCATCCCCTCCCCACGGGTTCCGCCCC
AGCTTCCTCTCGCGCAGCCCATGAGTAAGGCTCGATTCTTGTTGTGGAAG
GGGTTCAAAATCCGTTATCTTTTGCTGTTGGATGCTCGAAAACACACGGA
GTCATTCATAACTTTATGAATTCTGACGAGGAAACTCTTTTTTTCATTGT
GACATCTCAACGATGGGCCAAGATTTAATTCAGGTTCACTCAGAAACACC
TGTACTGTGTCGTGTATGGGCCCCTAACAGGTATCATGGCGTGGAAAGGT
ATAACAAGACATTTACTCACTTTTGCCGTGATCATGGTCGCGTTTGTTAC
CACGGTATCGGAAGAATCTTGCCCTTTTGTAAGGGTCAGGTCAACAAGGC
GAATACGGAAAGATTCGGTTGTCTTTCGCGTGCGACTGAAAATCGCCAAA
ATGGATAGGAATGTCATTAAAGCACCTACAAATATGGTTTTGAAGATAAC
AAGTCCACCATCCTTACGATTTTCCTCTTTTCGAGTCGACAAGAAAAGAA
ATCGCCCTGTGACGCTCAAGCGGAGTGACGAAGAGATTTACCTTTTCAAT
GTGCTAGATCATCGCGTCTCGCGACGTCGAATACTATTCCAGGTATTTTA
GGAATGGAATGCTATTGTCAATGTATCCGATAAGTATTATGAGCAAATAT
CTAATAGGCGAACTTCTACTCCTAGTTTAAAGGGAGTAGTCGAACTCTTC
CTCGCTTCGGCACCGCCACATACCTTAGCAACGGAAATATCACAGCATGT
TACAGACCATATATTATCATAGAGCACGACGACACAACAAATACTAGCGA
CTGGAGTCCAGATGGGTACTCACTTTACGCCAAATTTCAGCAGCCGTTGG
AGGAAGGACGCCCTTCGCCCGTCTTACGCAGACTTCATGCTCCAAACTCG
ACAGACATTGCTCGTGACTGTTACGAGTATTGCTCCTTCACGACAGAAGA
GCCTGTACCATTCTATTTCCAATGGGCAGAGGTGTCAAAGAGTTGTTCCT
GTTTTGGATCCCATGTAACACTTGTCTGGGAATCTACTTCATCCGTGTAC
CGCGTAATCCGGAAAGCAAAGCTTGGAAGCTTGTCACAGGAGCAACAGCT
TATTGCGGATGTATGGAAACTTGTGGACGGGATGTTCTTCGACAGAACCT
TTAATGGACAGCCTTGGCTCACCGTGTTACAGAATTCTATCAGAAAAGAT
TATGCTTCGATGGAGGAGGCTTACAACGCTACGAGGGCTATGCTAGATTT
GCTTCAGGATAATTACACAAGATTCCTTTCACCGAGTGAATACATGGAGT
TTCAAGTCGATACACTTGAGAAAGAATTTGCAGGTGTCGGTGTCCGCATG
CAAAATGCCACTATCGAAATAGTCTTAGAAGGACCAGCCAAAAAGGGTGG
CGTGAAGCCTGGTGACATAGTACTGTCTGTAGATGGTCAATCAACCGAGA
ATTTGACAACAGAAGTCATCGTACAGCTGCTTAGGGGGCCTCCAGAGACA
AACGTCTGTATGGATATTCTCTCAGTCGCCAATGGAGTCATCCAAGAACT
TTGTCTAGTTAGACAGTCTGTTGAAAATCCTTCTGTATCCGCTTCCGTGG
AGGAATTTGGTGGTGATAAGTATGGTATCTTGAAAGTTGACAGGTTCAGT
ACAACTACCGCCGATCTTATCGAACGAGCGCTTAAAACATTCTATGAAAA
CATCCGATTCATAGTATTAGATCTCAGAGGTAATGCAGGTGGACTACTTG
ATAGTGCTAAAAATGTGAGCAGCTTGTTTTTGCCGAAGTCCACGATAATT
TATTCCGAAATTGATCCCTTCACGTCAAAAATCGTCCGAAGCGATGCCGA
CGGTATAGAGATATCTATACCTATCTTAATTTTGGTCAACAAGCAATCCG
CTTCAGCTTCAGAGATCGTTTCGGCAGCACTACGCGAAAATAAGCGAGCA
AAAATCGTGGGAGAACGCACTTTTGGCAAGGGGGTCGCGCAATCTGTAGA
AGAAGTGACCAATGGTAGTGCAGTCAAAATTACGACATCAAAATGGCTTA
CACCGCTTGGAAATGATGTCAACAACGAAGGAATTGACGTAGACATTCCC
AGCACGTGCAGCGAGAGTGATTCAGTCCTTGTCTGCTTGAAGGATTACCT
GGAATCTCTCAATGAATAATGCAATCTGGCATTCAAAAAGCGACGTGGAA
TTTCAGATTTGATGAGGATTTAAGAACCACTCGTATAAGAACCACTCGTA
CAGTGGATAGGCATGAAGTAATGGGAGATTTCCGGCGTCGATAAGTCCAC
TGCCAGGCAAAAATGCGGGAAACATATCACTTCTTAGACGTAAGAGCCAA
GTCACTTGTGAAGTAGATGCAACGGATCGACAGCACAAATTTTGGCTGCA
GAGAATTTACCAAGATCCTCAATTACGAATAAACGAAACAGATGGATATA
TCGTTCTCAAATATGAATCGGAGTGACAGTTAGGGGTTCATCTCGTGACT
GACTTCTCATCTCTTCCCTTTGACGCGATTACATGAATGACATGATGATA
TGGGAACAAGGGATCAGCGATAGGAGGTTAAGGGAGCCGTCATGGGCCCT
ACATTATGTCCGTTATGGGCCCTACAGCCTCCACTACGATGTGCTGATCA
CAAGTGTGTCGTGTCATGGTTTGCGTCCACCTAATCATTTTGTATGATAT
ATTATTATACGACAACAGAACTGGCGTCGACCAGTGTCTTTCTTCTCTGG
TTGTCTATCGTGTTGGTTATCTTAGTACACGATTCTTTGGTGAATCATTT
GGTCTGTACTCTCAGGGAGAATAGTAATTGTACTGAAGAATTAATTGCGT
C
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protein sequence of rna6590

>rna6590-protein ID=rna6590-protein|Name=rna6590|organism=Nannochloropsis gaditana|type=polypeptide|length=76bp
MICGRVGESGFCAIASGRDVISKSQMHPVRDALTGSQANMLDGRYEFETG
ARNGRSQNFEIHVQPFPFPFPLPQVP
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mRNA from alignment at CM002469.1:15422..15774+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6590 ID=rna6590|Name=rna6590|organism=Nannochloropsis gaditana|type=mRNA|length=353bp|location=Sequence derived from alignment at CM002469.1:15422..15774+ (Nannochloropsis gaditana)
GTCAACGGATGTCAGGGGCGGatcgaaagagggagggagggagggaggga
tggatagagggagggacggagggaggggccgatgCACCTCAAACTTgaat
tgagggaggggagagagaggagatgatttgtgggagggtgggagagagtg
GATTTTGTGCGATTGCTTCTGGGAGAGATGTCATTTCAAAGTCACAAATG
CATCCGGTGCGAGATGCTCTTACAGGGTCACAGGCAAACATGCTCGATGG
GCGATACGAATTTGAAACGGGCGCGAGAAACGGTCGCagtcaaaattttg
aaatcCATGTTcaaccctttcctttcccattccccctcccgcaaGTGCCT
TGA
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Coding sequence (CDS) from alignment at CM002469.1:15422..15774+

>rna6590 ID=rna6590|Name=rna6590|organism=Nannochloropsis gaditana|type=CDS|length=231bp|location=Sequence derived from alignment at CM002469.1:15422..15774+ (Nannochloropsis gaditana)
atgatttgtgggagggtgggagagagtgGATTTTGTGCGATTGCTTCTGG
GAGAGATGTCATTTCAAAGTCACAAATGCATCCGGTGCGAGATGCTCTTA
CAGGGTCACAGGCAAACATGCTCGATGGGCGATACGAATTTGAAACGGGC
GCGAGAAACGGTCGCagtcaaaattttgaaatcCATGTTcaaccctttcc
tttcccattccccctcccgcaaGTGCCTTGA
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Synonyms
Publications