rna6589, rna6589 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6589
Unique Name	rna6589
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	825
Alignment location	CM002469.1:9062..12348 +

Link to JBrowse

Properties


Property Name	Value
Product	carboxyl-terminal protease
Orig transcript id	gnl\|cribi\|Naga_100480g1.5438.mrna
Orig protein id	gnl\|cribi\|Naga_100480g1.5438
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002469.1	supercontig	CM002469.1:9062..12348 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100480g1	gene6368	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6589	rna6589-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24100.1	cds6573	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002469.1:9062..12348+
coding sequence from alignment at CM002469.1:9062..12348+

mRNA sequence

>rna6589 ID=rna6589|Name=rna6589|organism=Nannochloropsis gaditana|type=mRNA|length=825bp
ACGAAGCAGGAATGGGAGAGGGTGATGAGTTTCGAAGGGGAGGTAGGGCG
GCAGGGGGGGGGGGGGAACGAAGAGGGAACAGTCGACAAGGAGGATGCTG
GGCGAATGAGGAGGAGGGAGGGGTTGGTGGTGGGATGGAAGGGGAGGTCG
AGGACCATTTTGTCGACAACTTCGAGGCAGTGATGAGTTGGGAAGACGCG
TGGTCTCACGCCTGTGGATTGACTACTTTTGCATCTCCGAGATGCGATGG
GACGTGTCAGCTTGGAAACATTGCTGTCTCGGGGAATCGTGTCACCTTAA
CATCTCCTTTCTCGACCTCCATGTGCAGGTCCCTCCCACCTCATCATTGA
CCGAGCTAATCTTGAAAGGCGACAAGAACGCGCAGATGAACGATTCCTTG
ATCTTCTTTCGGCGTTTTCCTCATTTACGCCACTTCAAGTGTGAGAGAGA
CGTTGGATATGCTTGAAAAGGAAACCTGTGAAAGAGAAACGAGAGGCTAA
GGCCTTCATCGGATTGGAGTGTATTATGTTCAATTGCAAGGAGTCAGCTA
CAAAGAAGCAAAGAGTCCCAAGACAACAGGCAGCCGGGTCCTCTTATACT
TCATTTATGCTTTGCGGGTAAATGAATCGACTCCGATACCTTTTAACGCA
TTTTCAATGAATAACAAAGGGGTACCGATACTTTGAGGATGCAAGCGAAT
TTTCGTTCGTGTGGAATGTACGGAGTTTGATAGACCGCTGAGCATTTCAT
CGTTATCTACAGAGCGTAGGTATTCCTAACAAGAAAGAAAAACTTAAGTT
GTTTTAAAAAAAGAAAAGGCATGCC

protein sequence of rna6589

>rna6589-protein ID=rna6589-protein|Name=rna6589|organism=Nannochloropsis gaditana|type=polypeptide|length=345bp
MFFDRTFNGQPWLTVLQNSIRKDYASMEEAYNATRAMLDLLQDNYTRFLS
PSEYMEFQVDTLEKEFAGVGVRMQNATIEIVLEGPAKKGGVKPGDIVLSV
DGQSTENLTTEVIVQLLRGPPETNVCMDILSVANGVIQELCLVRQSVENP
SVSASVEEFGGDKYGILKVDRFSTTTADLIERALKTFYENIRFIVLDLRG
NAGGLLDSAKNVSSLFLPKSTIIYSEIDPFTSKIVRSDADGIEISIPILI
LVNKQSASASEIVSAALRENKRAKIVGERTFGKGVAQSVEEVTNGSAVKI
TTSKWLTPLGNDVNNEGIDVDIPSTCSESDSVLVCLKDYLESLNE

mRNA from alignment at CM002469.1:9062..12348+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6589 ID=rna6589|Name=rna6589|organism=Nannochloropsis gaditana|type=mRNA|length=3287bp|location=Sequence derived from alignment at CM002469.1:9062..12348+ (Nannochloropsis gaditana)
CCACTTTGATTTTCCAAGTGCGatcatcccctccccacggGTTCCGCCCC
AGCTTCCTCTCGCGCAGCCCATGAGTAAGGCTCGATTCTTGTTGTGGAAG
GGGTTCAAAATCCGTTATCTTTTGCTGTTGGATGCTCGAAAACACACGGA
GTCATTCATAACTTTATGAATTCTGACGAGGAAACTCTTTTTTTCATTGT
GACATCTCAACGATGGGCCAAGATTTAATTCAGGTTCACTCAGAAACACC
TGTACTGTGTCGTGTATGGGCCCCTAACAGGTATCATGGCGTGGAAAGGT
ATAACAAGACATTTACTCACTTTTGCCGTGATCATGGTCGCGTTTGTTAC
CACGGTATCGGAAGAATCTTGCCCTTTTGTAAGGGTCAGGTCAACAAGGC
GAATACGGAAAGATTCGGTTGTCTTTCGCGTGCGACTGAAAATCGCCAAA
ATGGATAGGAATGTCATTAAAGCACCTACAAATATGGTTTTGAAGATAAC
AAGTCCACCATCCTTACGattttcctcttttcgagtcgacaagaaaagaa
atcGCCCTGTGACGCTCAAGCGGAGTGACGAAGAGATTTACCTTTTCAAT
GTGCTAGATCATCGCGTCTCGCGACGTCGAATACTATTCCAGGTATTTTA
GGAATGGAATGCTATTGTCAATGTATCCGATAAGTATTATGAGCAAATAT
CTAATAGGCGAACTTCTACTCCTAGTTTAAAGGGAGTAGTCGAACTCTTC
CTCGCTTCGGCACCGCCACATACCTTAGCAACGGAAATATCACAGCATGT
TACAGACCATATATTATCATAGAGGTCAGTTGGATGACAATCATATGAAG
AAAAGATACTTTAAACAAAACATCGAAGGAGAACTTCAGCAATGGGAGCG
ATAAGGCGTAAGTTAAGGAATTGATTCGCTCATGTAgccctgcttctccc
tcatATACTCGGTCCCTTAATGTCAGCACGACGACACAACAAATACTAGC
GACTGGAGTCCAGATGGGTACTCACTTTACGCCAAATTTCAGCAGCcgtt
ggaggaaggacgcCCTTCGCCCGTCTTACGCAGACTTCATGCTCCAAACT
CGACAGACATTGCTCGTGACTGTTACGAGTATTGCTCCTTCACGACAGAA
GAGCCTGTACCATTCTATTTCCAATGGGCAGAGGTGTCAAAGAGTTGTTC
CTGTTTTGGATCCCATGTAACACTTGTCTGGGAATCTACTTCATCCGTGT
ACCGCGTAATCCGGAAAGCAAAGCTTGGAAGCTTGTCACAGGAGCAACAG
CTTATTGCGGTACGCTTTAGAAGTCTTATTACGTGAGAGACCGACAATAA
TAAGAAATATTCCATCATATCCTTTGTTCTCATAACGCCTTGTTCCACAG
GATGTATGGAAACTTGTGGACGGGATGTTCTTCGACAGAACCTTTAATGG
ACAGCCTTGGCTCACCGTGTTACAGAATTCTATCAGAAAAGATTATGCTt
cgatggaggaggcttaCAACGCTACGAGGGTATGTATGTGTCTAACCTGC
TCAAATATTTTGGCATAAAAAGTTGATTGGAAAATTTCGCGCATGGGCAG
GCTATGCTAGATTTGCTTCAGGATAATTACACAAGATTCCTTTCACCGAG
TGAATACATGGAGTTTCAAGTCGATACACTTGAGAAAGAATTTGCAGGTG
TCGGTGTCCGCATGCAAAATGTACGTCACATGCAAAATGTCCAAATCAAG
CACATCATTTTACCTCTTCTCGGCCTTTCAACGATATCCTAGGCCACTAT
CGAAATAGTCTTAGAAGGACCAGCCAAAAAGGGTGGCGTGAAGCCTGGTG
ACATAGTACTGTCTGTAGATGGTCAATCAACCGAGAATTTGACAACAGAA
GTCATCGTACAGCTGCTTAGGGGGCCTCCAGAGACAAACGTCTGTATGGA
TATTCTCTCAGTCGCCAATGGAGTCATCCAAGAACTTTGTCTAGTTAGAC
AGTCTGTTGAAAATCCTTCTGTATCCGCTTCCGTGGAGGAATTTGGTGGT
GATAAGTATGGTATCTTGAAAGTTGACAGGTTCAGTACAACTACCGCCGA
TCTTATCGAACGAGCGCTTAAAACATTCTATGAAAACATCCGATTCATAG
TATTAGATCTCAGAGGTAATGCAGGTGGACTACTTGATAGTGCTAAAAAT
GTGAGCAGCTTGTTTTTGCCGAAGTCCACGATAATTTATTCCGAAATTGA
TCCCTTCACGTCAAAAATCGTCCGAAGCGATGCCGACGGTATAGAGATAT
CTATACCTATCTTAATTTTGGTCAACAAGCAATCCGCTTCAGCTTCAGAG
ATCGTTTCGGCAGCACTACGCGAAAATAAGCGAGCAAAAATCGTGGGAGA
ACGCACTTTTGGCAAGGGGGTCGCGCAATCTGTAGAAGAAGTGACCAATG
GTAGTGCAGTCAAAATTACGACATCAAAATGGCTTACACCGCTTGGAAAT
GATGTCAACAACGAAGGAATTGACGTAGACATTCCCAGCACGTGCAGCGA
GAGTGATTCAGTCCTTGTCTGCTTGAAGGATTACCTGGAATCTCTCAATG
AATAATGCAATCTGGCATTCAAAAAGCGACGTGGAATTTCAGATTTGATG
AGGATTTAAGAACCACTCGTATAAGAACCACTCGTACAGTGGATAGGCAT
GAAGTAATGGGAGATTTCCGGCGTCGATAAGTCCACTGCCAGGCAAAAAT
GCGGGAAACATATCACTTCTTAGACGTAAGAGCCAAGTCACTTGTGAAGT
AGATGCAACGGATCGACAGCACAAATTTTGGCTGCAGAGAATTTACCAAG
ATCCTCAATTACGAATAAACGAAACAGATGGATATATCGTTCTCAAATAT
GAATCGGAGTGACAGTTAGGGGTTCATCTCGTGACTGACTTCTCATCTCT
TCCCTTTGACGCGATTACATGAATGACATGATGATATGGGAACAAGGGAt
cagcgataggaggttaaggGAGCCGTCATGGGCCCTACATTATGTCCGTT
ATGGGCCCTACAGCCTCCACTACGATGTGCTGATCACAAGTGTGTCgtgt
catggtttgcgtccacctaatcattttGTATGATATATTATTATACGACA
ACAgaactggcgtcgaccagtgtctttcttctctgGTTGTCTATCGTGtt
ggttatcttagtacaCGATTCTTTGGTGAATCATTTGGTCTGTActctca
gggagaatagtaaTTGTACTGAAGAATTAATTGCGTC

Coding sequence (CDS) from alignment at CM002469.1:9062..12348+

>rna6589 ID=rna6589|Name=rna6589|organism=Nannochloropsis gaditana|type=CDS|length=3114bp|location=Sequence derived from alignment at CM002469.1:9062..12348+ (Nannochloropsis gaditana)
ATGTTCTTCGACAGAACCTTTAATGGACAGCCTTGGCTCACCGTGTTACA
GAATTCTATCAGAAAAGATTATGCTtcgatggaggaggcttaCAACGCTA
CGAGGGCTATGCTAGATTTGCTTCAGGATAATTACACAAGATTCCTTTCA
CCGAGTGAATACATGGAGTTTCAAGTCGATACACTTGAGAAAGAATTTGC
AGGTGTCGGTGTCCGCATGCAAAATGCCACTATCGAAATAGTCTTAGAAG
GACCAGCCAAAAAGGGTGGCGTGAAGCCTGGTGACATAGTACTGTCTGTA
GATGGTCAATCAACCGAGAATTTGACAACAGAAGTCATCGTACAGCTGCT
TAGGGGGCCTCCAGAGACAAACGTCTGTATGGATATTCTCTCAGTCGCCA
ATGGAGTCATCCAAGAACTTTGTCTAGTTAGACAGTCTGTTGAAAATCCT
TCTGTATCCGCTTCCGTGGAGGAATTTGGTGGTGATAAGTATGGTATCTT
GAAAGTTGACAGGTTCAGTACAACTACCGCCGATCTTATCGAACGAGCGC
TTAAAACATTCTATGAAAACATCCGATTCATAGTATTAGATCTCAGAGGT
AATGCAGGTGGACTACTTGATAGTGCTAAAAATGTGAGCAGCTTGTTTTT
GCCGAAGTCCACGATAATTTATTCCGAAATTGATCCCTTCACGTCAAAAA
TCGTCCGAAGCGATGCCGACGGTATAGAGATATCTATACCTATCTTAATT
TTGGTCAACAAGCAATCCGCTTCAGCTTCAGAGATCGTTTCGGCAGCACT
ACGCGAAAATAAGCGAGCAAAAATCGTGGGAGAACGCACTTTTGGCAAGG
GGGTCGCGCAATCTGTAGAAGAAGTGACCAATGGTAGTGCAGTCAAAATT
ACGACATCAAAATGGCTTACACCGCTTGGAAATGATGTCAACAACGAAGG
AATTGACGTAGACATTCCCAGCACGTGCAGCGAGAGTGATTCAGTCCTTG
TCTGCTTGAAGGATTACCTGGAATCTCTCAATGAATAAATGTTCTTCGAC
AGAACCTTTAATGGACAGCCTTGGCTCACCGTGTTACAGAATTCTATCAG
AAAAGATTATGCTtcgatggaggaggcttaCAACGCTACGAGGGCTATGC
TAGATTTGCTTCAGGATAATTACACAAGATTCCTTTCACCGAGTGAATAC
ATGGAGTTTCAAGTCGATACACTTGAGAAAGAATTTGCAGGTGTCGGTGT
CCGCATGCAAAATGCCACTATCGAAATAGTCTTAGAAGGACCAGCCAAAA
AGGGTGGCGTGAAGCCTGGTGACATAGTACTGTCTGTAGATGGTCAATCA
ACCGAGAATTTGACAACAGAAGTCATCGTACAGCTGCTTAGGGGGCCTCC
AGAGACAAACGTCTGTATGGATATTCTCTCAGTCGCCAATGGAGTCATCC
AAGAACTTTGTCTAGTTAGACAGTCTGTTGAAAATCCTTCTGTATCCGCT
TCCGTGGAGGAATTTGGTGGTGATAAGTATGGTATCTTGAAAGTTGACAG
GTTCAGTACAACTACCGCCGATCTTATCGAACGAGCGCTTAAAACATTCT
ATGAAAACATCCGATTCATAGTATTAGATCTCAGAGGTAATGCAGGTGGA
CTACTTGATAGTGCTAAAAATGTGAGCAGCTTGTTTTTGCCGAAGTCCAC
GATAATTTATTCCGAAATTGATCCCTTCACGTCAAAAATCGTCCGAAGCG
ATGCCGACGGTATAGAGATATCTATACCTATCTTAATTTTGGTCAACAAG
CAATCCGCTTCAGCTTCAGAGATCGTTTCGGCAGCACTACGCGAAAATAA
GCGAGCAAAAATCGTGGGAGAACGCACTTTTGGCAAGGGGGTCGCGCAAT
CTGTAGAAGAAGTGACCAATGGTAGTGCAGTCAAAATTACGACATCAAAA
TGGCTTACACCGCTTGGAAATGATGTCAACAACGAAGGAATTGACGTAGA
CATTCCCAGCACGTGCAGCGAGAGTGATTCAGTCCTTGTCTGCTTGAAGG
ATTACCTGGAATCTCTCAATGAATAAATGTTCTTCGACAGAACCTTTAAT
GGACAGCCTTGGCTCACCGTGTTACAGAATTCTATCAGAAAAGATTATGC
TtcgatggaggaggcttaCAACGCTACGAGGGCTATGCTAGATTTGCTTC
AGGATAATTACACAAGATTCCTTTCACCGAGTGAATACATGGAGTTTCAA
GTCGATACACTTGAGAAAGAATTTGCAGGTGTCGGTGTCCGCATGCAAAA
TGCCACTATCGAAATAGTCTTAGAAGGACCAGCCAAAAAGGGTGGCGTGA
AGCCTGGTGACATAGTACTGTCTGTAGATGGTCAATCAACCGAGAATTTG
ACAACAGAAGTCATCGTACAGCTGCTTAGGGGGCCTCCAGAGACAAACGT
CTGTATGGATATTCTCTCAGTCGCCAATGGAGTCATCCAAGAACTTTGTC
TAGTTAGACAGTCTGTTGAAAATCCTTCTGTATCCGCTTCCGTGGAGGAA
TTTGGTGGTGATAAGTATGGTATCTTGAAAGTTGACAGGTTCAGTACAAC
TACCGCCGATCTTATCGAACGAGCGCTTAAAACATTCTATGAAAACATCC
GATTCATAGTATTAGATCTCAGAGGTAATGCAGGTGGACTACTTGATAGT
GCTAAAAATGTGAGCAGCTTGTTTTTGCCGAAGTCCACGATAATTTATTC
CGAAATTGATCCCTTCACGTCAAAAATCGTCCGAAGCGATGCCGACGGTA
TAGAGATATCTATACCTATCTTAATTTTGGTCAACAAGCAATCCGCTTCA
GCTTCAGAGATCGTTTCGGCAGCACTACGCGAAAATAAGCGAGCAAAAAT
CGTGGGAGAACGCACTTTTGGCAAGGGGGTCGCGCAATCTGTAGAAGAAG
TGACCAATGGTAGTGCAGTCAAAATTACGACATCAAAATGGCTTACACCG
CTTGGAAATGATGTCAACAACGAAGGAATTGACGTAGACATTCCCAGCAC
GTGCAGCGAGAGTGATTCAGTCCTTGTCTGCTTGAAGGATTACCTGGAAT
CTCTCAATGAATAA

Synonyms

Publications