rna6588, rna6588 (mRNA) Nannochloropsis gaditana

Overview
Namerna6588
Unique Namerna6588
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length354
Alignment locationCM002469.1:3330..4154 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101445g2.4130.mrna
Orig protein idgnl|cribi|Naga_101445g2.4130
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:3330..4154 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101445g2gene6367Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24101.1cds6572Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6588rna6588-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6588 ID=rna6588|Name=rna6588|organism=Nannochloropsis gaditana|type=mRNA|length=354bp
TCCCGTTCTCCCTCAATCCCTCATGTATCATCTGTTCTGCCGAAGATGAC
CTCAGCTGTCCCTTTCCTCCCTCCCTCCCTCCCTCCCTTTCTCCCTCCCT
CCCTCCTTAAGGAACGGCTGAAAAGTTCCCGCCGAAACTGGAAAGATTTG
GAGACGGAGATTATCCCTGCTCCATTTGTCGAGGTCCCCATCGGGGTCAT
GGAAGACCGGCTTTTGGGTTCGATTGATTTGGAGGAGTCTATCCGGAAGG
GAAAGGCGGCCTTCCAGCCAGGTGGGGAGGGAGGGAGGGAGGGAGGGAGG
GAGGGAGGGAGGGGGGATGATTTTAAGACCCAGGAAAGGGATCCAGGGAG
TTAG
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protein sequence of rna6588

>rna6588-protein ID=rna6588-protein|Name=rna6588|organism=Nannochloropsis gaditana|type=polypeptide|length=115bp
EAGMGEGDEFRRGGRAAGGGGERRGNSRQGGCWANEEEGGVGGGMEGEVE
DHFVDNFEAVMSWEDAWSHACGLTTFASPRCDGTCQLGNIAVSGNRVTLT
SPFSTSMCRSLPPHH
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mRNA from alignment at CM002469.1:3330..4154-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6588 ID=rna6588|Name=rna6588|organism=Nannochloropsis gaditana|type=mRNA|length=825bp|location=Sequence derived from alignment at CM002469.1:3330..4154- (Nannochloropsis gaditana)
ACGAAGCAGGAATGGGAGAGGGTGATGAGTTTCGAAGGGGAGGTAGGGCG
GCAGGGGGGGGGGGGGAACGAAGAGGGAACAGTCGACAAGGAGGATGCTG
GGCGAATGAGGAGGAGGGAGGGGTTGGTGGTGGGATGGAAGGGGAGGTCG
AGGACCATTTTGTCGACAACTTCGAGGCAGTGATGAGTTGGGAAGACGCG
TGGTCTCACGCCTGTGGATTGACTACTTTTGCATCTCCGAGATGCGATGG
GACGTGTCAGCTTGGAAACATTGCTGTCTCGGGGAATCGTGTCACCTTAA
CATCTCCTTTCTCGACCTCCATGTGCAGGTCCCTCCCACCTCATCATTGA
CCGAGCTAATCTTGAAAGGCGACAAGAACGCGCAGATGAACGATTCCTTG
ATCTTCTTTCGGCGTTTTCCTCATTTACGCCACTTCAAGTGTGAGAGAGA
CGTTGGATATGCTTGAAAAGGAAACCTGTGAAAGAGAAACGAGAGGCTAA
GGCCTTCATCGGATTGGAGTGTATTATGTTCAATTGCAAGGAGTCAGCTA
CAAAGAAGCAAAGAGTCCCAAGACAACAGGCAGCCGGGTCCTCTTATACT
TCATTTATGCTTTGCGGGTAAATGAATCGACTCCGATACCTTTTAACGCA
TTTTCAATGAATAACAAAGGGGTACCGATACTTTGAGGATGCAAGCGAAT
TTTCGTTCGTGTGGAATGTACGGAGTTTGATAGACCGCTGAGCATTTCAT
CGTTATCTACAGAGCGTAGGTATTCCTAACAAGAAAGAAAAACTTAAGTT
GTTTTAAAAAAAGAAAAGGCATGCC
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Coding sequence (CDS) from alignment at CM002469.1:3330..4154-

>rna6588 ID=rna6588|Name=rna6588|organism=Nannochloropsis gaditana|type=CDS|length=348bp|location=Sequence derived from alignment at CM002469.1:3330..4154- (Nannochloropsis gaditana)
GAAGCAGGAATGGGAGAGGGTGATGAGTTTCGAAGGGGAGGTAGGGCGGC
AGGGGGGGGGGGGGAACGAAGAGGGAACAGTCGACAAGGAGGATGCTGGG
CGAATGAGGAGGAGGGAGGGGTTGGTGGTGGGATGGAAGGGGAGGTCGAG
GACCATTTTGTCGACAACTTCGAGGCAGTGATGAGTTGGGAAGACGCGTG
GTCTCACGCCTGTGGATTGACTACTTTTGCATCTCCGAGATGCGATGGGA
CGTGTCAGCTTGGAAACATTGCTGTCTCGGGGAATCGTGTCACCTTAACA
TCTCCTTTCTCGACCTCCATGTGCAGGTCCCTCCCACCTCATCATTGA
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Synonyms
Publications