rna6579, rna6579 (mRNA) Nannochloropsis gaditana

Overview
Namerna6579
Unique Namerna6579
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length3450
Alignment locationCM002468.1:839068..839698 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100660g3.6274.mrna
Orig protein idgnl|cribi|Naga_100660g3.6274
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:839068..839698 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100660g3gene6358Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6579rna6579-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24110.1cds6563Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6579 ID=rna6579|Name=rna6579|organism=Nannochloropsis gaditana|type=mRNA|length=3450bp
GAACCTTCCCATTCAAACAAATTAGCGTCCCACGCAGAGGCACCAGCAGC
AAGTAAGCATGGAGAATGATCAAATGCACGGTTCGGGTGATGCAAGTCTA
TGTAAGGGGGCGTCACGACAGGAGCCGATGAGTCGTCAACGGCTGCTGCT
AGTAAGCTACGGCAACGTTGGGAATTTCTTCGCCTGAAATTTTCCCTTCT
TGACCTCACACAACCCTTTCCTTCGTGTCAGGGATACAACATGCCTGTCG
AATGGGGCGTTCGTGGCGTCTGCTTCGTGGCCAAAGCCACCTCTTCGTTT
TATCATACGGAGTGTCTGCTGGCTACAAGATTTTAACCTCCCCATCTGTT
TACCAACACGAGTATCCATTGACTTAACTATGGATGGCATAAAGCGGTGC
AATCTAGAGCCAACGCAGCCCTCATTGTCGTTTCCGCTCGATGCTTCCTT
CTCTATCTGCGTGAAAGAATCGTCGGCGCCATTCTCTTCCCCGCTTTTTC
TGAGCTTGTCCTACTACTTTCCTTCTACCGTCACCGCCACCTCTTTCTCG
TCTTCATCATGCTGGCTCACTGATGAGGAAGTGGAGGCGCCATTTGGCCT
TCCTCCCTCATCTCAAGCGCTCGCTTCATTCATCGCGGTCCCACAAAGGG
GGAAAGAATCGTATAGGTTGTGGAATCCTGCCATGGACATGTGCCTGGAG
TATTTGGGAATAGACAGACAAAAACATGTAAAATATTATCTAAGAGGCCA
GAAGATTAGAGATCATTCGAAAAGAAAGGTCAATGGAGGGCCTGGGCACC
TAGGGGTGAATAGAGTAGGAAGCTGGGATCCAAATGAAGAGGAAAGACAG
GGAGACGGCGTTGCGCATACAGGGGCAAGTGGAGGGTGGAGATGGTGCCA
AGAAGGGCGGTTGGCATGGGTGGATCGGGAGGGGCGGGAGGTGGGGGTCT
TGGGGTGGGACCCGGCAGAGAGGAGGTGGGCGCTTCGAGGGAACCAGGAC
GGGCAGGAGGAGGGAAGAGAGAGAGGCACAGAGGAGAGGACAGCAAGGAA
AAAGGAGGAGAAAGAGCCACAATTCCTCGATGAATTGTCCTTGCATCGGC
ACGAGTGGATGGGCCACGATTTTCAAGGGCCGTTCAAGGTTGTCTGTGCC
TCGTCCTTGCGATGCATGTGTGACTGCGACAGTAGTGACAAGGTATCTCC
CTCTCTCCCTCCCTCCCGCCTTCCCTCCAGCCTTCCCTCCCATTCGTCCT
CACATCACGTTTGCTCTTTTCCCCTCTTAGGTCCTCTCCTTATGTCGACG
TCATCTCTCTGACGATAAGAAGTGGCTTTACCAACCGCAGTCACAGCGGC
TGATCGAAGCCCGAAGCCGATCTCCGCTCGTGCTCCATGGAGGGATGATA
CAAGGAGGAAGGGGCAGAGAGGGGGAAGAAGCGCAACAGGAGTTGGTGGA
GAAGAGTTTGCCAGCCGCCGCATCAAGAAAATCGTTTAGCTGTTCGCAAA
TTTCCACCTCTTCCTCCTCCCCCTCCTCCATCCCTTCCTCCTCCCCCTCC
TCCTCCCCCCTTCGCCTCGTCTACTGCCCCGCTTCTTGCTTTTTTACCCA
TCCTGCTACCTTTACCGTCCTCGCTTGCGCCGAGAATTCTGATGAGTGGA
GCCTCCCTCTCCGCCTCACACGCCCGCGTTCGGGTCTCTCAGAGGAGGAT
CGACAAGAGCGGCTGCGACAGGTCTGGATCCCAGAGCGTCACACCCTCCC
CTACCCCTCCACCCTTACCTCCTCCTCCTCCTCCCTGTCCTCCTGCTCCG
CAGCAATCAATGCTCCACATGGTCCGACGCCATCCTCTTCCCTCCGTCTG
CCCTCTTTGCGGGCTTCCACTCCCTCCTGTTCCTTGCCGACCCCCCTCCC
GCCCAGCCCGGATGGCCAAGGGACGCGAGGAGAGAGGATCACGCCCTCCT
TTCTCTCTGCCAGGGGACTTCTCTTCTCCCTTCCTATCCCCCGCTCAACT
AGAAGGGAGGAGATTGAGAGACGTGACGGGCGGGAGGGCGGGAGAGTGGG
AGGGATGGAGGGAGGGAACGAGGATAAGGTGTTCCACCCGCTCGCCGAGA
CGGGGGAAGGAAAACTGTACACGTTCTCAGTCGGTCACTCCCACTATGTC
CTGAAGCGCTACCACAAGCATGCTGCAGGAAAGGCTCTGAAAGAACTTGC
CGTCCTTCTTCACCTCTCTGCCTCCATCCGCGCGTGCCCATCCTCAGCCC
CTTCAGTCCACCCTCCCTTCCTCGCCTCTTTGTGCGGAGTGGTCTGGAAC
CACAACAACACGGAAGCGGGAGGGGAAGGGGAAAGCGGGTCGAAGGAGGA
AAAAGCGTCGCGACCCTCGGCGCTCGTCTTGGAGAGGGTATTGCTCAATG
GACAGAAAACTGAAAATCGAGTGGACCTTCGCGCCTTCCTTGTCCACCGT
CGGGAGGCGCAGGAGGCTTCCCTCCCTCCCTTCCTCCCCCTTCCCCTTCC
CCACCTTCTTACCCTCGCGGAGGCCTTGGGGGAGGCTCTGGCCTTCGTCC
ATGGCAAGGGCCTCTGCCATCGGGATGTGCATAGCGGTAACATTCTCCTC
AGCCACTTCGAAGAAGACACCTTACCTATCAGCGGGTCTGTGGTCAATCC
TCTCACCCTTTCCTGCCCGCAACGACCCCTCCTTCGGATCAAGCTCGCCG
ATTTTGGCCTCGCCTGCTCCTTTAATCCTTTACGCGCTTGGTTGGATCTC
CGCGCGCTAGCCTACGTGCTGACGGAGGCGGCTCATGATGGGGTTGACCG
GACTGGCGGCTTCGGAGACACAGAGGGCGCTTCAGAGAGACTAAAGCAGT
GGGAAGATTTCGATCCCTCTGAAAGGAAAAAACAGTGGCCGCTGCCTGCG
CGCTTGACCGCCAAATGGTCCTTGTCTTTACCATCGCCCGCAGAGCAAGT
CTCTTTCTTCTCTATGCATGACCTTTCTCCTTACTTCCGTCGCTCCCTCG
CCCCACTCCTTCTCGGCGTATTTGGCGGAGGGGAGGACAGGAGACAGCCG
GCCGAAGGAGGCGAAAAGGGAGAGAAGGGAAGGAAGTGTACGCAATGGAC
GCCTCTGGGGGTAGCGGCCTGGGCCCGGAGGGAGCGTCAAGATTGGTCAG
GGCACATAAGAAATAGCATCTGAGAATGAGCTGAGAGGCGGATCCCTCAG
GGTGTGCTCCAACAAATGCATTTCCTCGTTTTACGAGCTCGTGCTCTCAG
TCTGGACCGGACGTGTGATGCAGAGGTCTGCGAGGCCTCAAAGAGCCTCG
ACAATGTAGTGCAACGACATTTTCAAAAGGGCTAACATCATGAAATGATT
ATTGAAAATGTAAGTAAGATGTGTGAGTTTCACAGTGTAGTTGCAGTTGA
AAATAGAAAGTACGAAAGAAATAGCGAAATAGCGACAGAACAGCACCTGC
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protein sequence of rna6579

>rna6579-protein ID=rna6579-protein|Name=rna6579|organism=Nannochloropsis gaditana|type=polypeptide|length=153bp
MRRGGTGCALDHSIFGCVLLLCECVGGWMTSCVALFARFGLASGVQTRFP
CETCSIALEERVYTYISQSTRSKPAPATTTSRNSVKQIVVLIRRGAGTRK
GQCLNMEVYEEVFCYPRLRGRERDGSVRHQTLGPLRKRCGGQGKVHEAEH
VSR
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mRNA from alignment at CM002468.1:839068..839698-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6579 ID=rna6579|Name=rna6579|organism=Nannochloropsis gaditana|type=mRNA|length=631bp|location=Sequence derived from alignment at CM002468.1:839068..839698- (Nannochloropsis gaditana)
ATGAGGAGAGGAGGGACAGGCTGGTAAAGAGGGAGAGGTGAGAGGGGAAA
CATATTGTATGTGGCGCCCATCATCCCTTCGCGTCCTGTCCTTCCGTTAG
GTCTCCTAGTGTATTCGGAGAGTGCGCTCGATCACTCAATTTTTGGGTGC
GTCTTGCTACTTTGTGAGTGCGTGGGTGGATGGATGACTTCGTGTGTCGC
TCTCTTTGCTCGTTTCGGCCTTGCTTCGGGCGTACAGACGCGTTTTCCTT
GTGAGACGTGTAGTATTGCCTTGGAGGAGAGAGTGTACACATATATAAGC
CAAAGCACTCGAAGTAAGCCAGCCCCAGCAACAACAACCAGCAGAAATTC
AGTCAAACAAATTGTGTGTTGAGGGTTAGGGAAGTTAAAGTGACAGGAGT
AACATAAAAGTACCTATATATTTTTGACGATAAAGTGTACTTATACGACG
TGGAGCAGGAACTCGTAAAGGGCAATGTTTGAACATGGAGGTCTATGAGG
AAGTCTTTTGCTATCCAAGGCTCAGGGGCAGAGAGAGAGATGGGAGTGTG
CGACATCAAACACTTGGACCTTTACGTAAACGATGCGGTGGACAAGGAAA
AGTGCATGAAGCAGAACATGTCAGCCGATAG
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Coding sequence (CDS) from alignment at CM002468.1:839068..839698-

>rna6579 ID=rna6579|Name=rna6579|organism=Nannochloropsis gaditana|type=CDS|length=1386bp|location=Sequence derived from alignment at CM002468.1:839068..839698- (Nannochloropsis gaditana)
TGTACTTATACGACGTGGAGCAGGAACTCGTAAAGGGCAATGTTTGAACA
TGGAGGTCTATGAGGAAGTCTTTTGCTATCCAAGGCTCAGGGGCAGAGAG
AGAGATGGGAGTGTGCGACATCAAACACTTGGACCTTTACGTAAACGATG
CGGTGGACAAGGAAAAGTGCATGAAGCAGAACATGTCAGCCGATAGTGCG
CTCGATCACTCAATTTTTGGGTGCGTCTTGCTACTTTGTGAGTGCGTGGG
TGGATGGATGACTTCGTGTGTCGCTCTCTTTGCTCGTTTCGGCCTTGCTT
CGGGCGTACAGACGCGTTTTCCTTGTGAGACGTGTAGTATTGCCTTGGAG
GAGAGAGTGTACACATATATAAGCCAAAGCACTCGAAGTAAGCCAGCCCC
AGCAACAACAACCAGCAGAAATTCAGTCAAACAAATTGTATGAGGAGAGG
AGGGACAGGCTGTGTACTTATACGACGTGGAGCAGGAACTCGTAAAGGGC
AATGTTTGAACATGGAGGTCTATGAGGAAGTCTTTTGCTATCCAAGGCTC
AGGGGCAGAGAGAGAGATGGGAGTGTGCGACATCAAACACTTGGACCTTT
ACGTAAACGATGCGGTGGACAAGGAAAAGTGCATGAAGCAGAACATGTCA
GCCGATAGTGCGCTCGATCACTCAATTTTTGGGTGCGTCTTGCTACTTTG
TGAGTGCGTGGGTGGATGGATGACTTCGTGTGTCGCTCTCTTTGCTCGTT
TCGGCCTTGCTTCGGGCGTACAGACGCGTTTTCCTTGTGAGACGTGTAGT
ATTGCCTTGGAGGAGAGAGTGTACACATATATAAGCCAAAGCACTCGAAG
TAAGCCAGCCCCAGCAACAACAACCAGCAGAAATTCAGTCAAACAAATTG
TATGAGGAGAGGAGGGACAGGCTGTGTACTTATACGACGTGGAGCAGGAA
CTCGTAAAGGGCAATGTTTGAACATGGAGGTCTATGAGGAAGTCTTTTGC
TATCCAAGGCTCAGGGGCAGAGAGAGAGATGGGAGTGTGCGACATCAAAC
ACTTGGACCTTTACGTAAACGATGCGGTGGACAAGGAAAAGTGCATGAAG
CAGAACATGTCAGCCGATAGTGCGCTCGATCACTCAATTTTTGGGTGCGT
CTTGCTACTTTGTGAGTGCGTGGGTGGATGGATGACTTCGTGTGTCGCTC
TCTTTGCTCGTTTCGGCCTTGCTTCGGGCGTACAGACGCGTTTTCCTTGT
GAGACGTGTAGTATTGCCTTGGAGGAGAGAGTGTACACATATATAAGCCA
AAGCACTCGAAGTAAGCCAGCCCCAGCAACAACAACCAGCAGAAATTCAG
TCAAACAAATTGTATGAGGAGAGGAGGGACAGGCTG
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Synonyms
Publications