rna657, rna657 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna657
Unique Name	rna657
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1377
Alignment location	CM002456.1:96797..97153 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100391g6.3408.mrna
Orig protein id	gnl\|cribi\|Naga_100391g6.3408
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:96797..97153 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100391g6	gene630	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna657	rna657-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30019.1	cds657	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002456.1:96797..97153-
coding sequence from alignment at CM002456.1:96797..97153-

mRNA sequence

>rna657 ID=rna657|Name=rna657|organism=Nannochloropsis gaditana|type=mRNA|length=1377bp
ATGCACCAGACAGCCTATGTCCACACCACGTCGTTCCCTGTTCTTCCCTT
CTTCGAATCTCCGACAGAAAATGACGGCCATCCCTTGTCCCTTCTCTTTC
TCTTCTCTCATATCTCATTACTCTCCTTCCGCTTCATCCACCTATGCTCC
GTCTTTCTCCTCTTCCTCCCTTTGCTCCTCCTCCTCCTCCTCCTCCTCCT
CCTCCTCCTCCTCCTCCTCCTCCTCCCCCTCTTCGTCTCCTCCATCTTTG
CCACCCCCTTCTCTGGGACAATAGCCGCCTCTTTGGCATGGGCCACATCT
TTCCTCCTCGACCACAACGTCCCCGACGCCGCCCTCTCTGCCGAATACCT
ACTGCTTCACGCCCTCCACTACCCGCCATCAACGCCGCGGCGGGTCCTTC
ATGAACGGGTCTCCGAGGGAAGTGAAGAGAAAGGGGAAAATGTTGTACCC
CCAGACACCCGGGCTGCCTTTCAATCCTTGTTATACCGACATGGAATTAA
GCGGGAGCCAGTGCAGTATTTGGTGGGAGGTTGGGATTTCCATCGCATCC
ATTTAGCCCTGGCGCCCCCCGTCCTGATACCAAGGCCTGAGACCGAAGAG
CTCGTGGAGTGGGTCCTGGAGGAGGAAGGGAGGGAGGAAGGGGAAGAGGG
AGGGGGAGGGGGAGGACCAAATCTTCCGATCCGGTTTTTGGACGTGGGTT
GTGGGAGCGGGGCGATCGGCTTGGCTTTACTCTGGGCTTACAGGGACGCG
TGGCCGTCAAGAGACGTCACTTGCGTGGCCCTAGATCCGCATCCTGCTGC
AGTCGCTCTTGCAAAGGCGAATGCTGCTCGACTGGGTTTCCCTCCATCCG
CTTACCAGGTCGTGCAGGGCGCGCTAGGGGAGGACAAGGGGGAGGGAGGG
GAGGAGGGAGAGAAGGAGGGAGGGGTGGTGGCAAGCCTCTTGGGGGCCGG
AGGCTTGAAAGGAGGCAGTATAGAGGGGGAATGGGAAACGAAGAGGCGCA
AAAAATTCGACTTCATTGTCGCGAACCCTCCGTACATCCCCGACGCGGAT
ATGGGCCGGCTTCAGCCTGAAGTCAAGGACTGGGAGGACCCAGGTGCTTT
GGCAGGCGGAGGCGACGACGGAACTCGAATAATCAGGGCGATACTGCGAG
CTGCCCCGCGATTGCTTGAACCGAATCGCATAGGGATGAAAAAAGCGAAG
GTATGGATGGAAGTAGATGCGAGCCACCCCCTTCTTTTCGCGAAGGAGGA
AGAAGAAAAGGAGAGGAGGAAAGTGGGAGGAGAATTGCGGCTGATGGAAT
GGCGGAAAGACCTCTCTGGTAAGCCGCGTTTCTGTTGCTGGGCACTGAAT
GAATCTCCGAAAGATGCGGATTCATGA

protein sequence of rna657

>rna657-protein ID=rna657-protein|Name=rna657|organism=Nannochloropsis gaditana|type=polypeptide|length=102bp
MQTKRINGASRTTYDGINPKPPRALTDVHRGISRFSDRRWNNTHVQIIMP
ASLWEWAVWRSFLQHFVRTWFIKLQRNMFLVVIEVPSPPLSRPLLPSVHV
VK

mRNA from alignment at CM002456.1:96797..97153-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna657 ID=rna657|Name=rna657|organism=Nannochloropsis gaditana|type=mRNA|length=357bp|location=Sequence derived from alignment at CM002456.1:96797..97153- (Nannochloropsis gaditana)
ATGCAGACGAAGCGGATCAACGGGGCGTCACGCACAACTTATGACGGCAT
TAATCCGAAGCCACCCCGGGCATTGACTGACGTCCACCGGGGAATTTCTA
GGTTCTCTGACCGTCGCTGGAACAACACGCACGTGCAAATAATTATGCCC
GCATCCTTATGGGAATGGGCGGTATGGCGGTCGTTTTTGCAACATTTTGT
CCGGACTTGGTGTCATTATTGTCGCCTTTGAAGAGACTTCCTGAACCTGA
CGTGGTCAGTCATCAAGCTGCAGCGAAATATGTTCCTTGTTGTCATTGAA
GTGCCTTCCCCTCCTTTATCTCGACCCCTGCTTCCATCCGTACATGTTGT
GAAATGA

Coding sequence (CDS) from alignment at CM002456.1:96797..97153-

>rna657 ID=rna657|Name=rna657|organism=Nannochloropsis gaditana|type=CDS|length=618bp|location=Sequence derived from alignment at CM002456.1:96797..97153- (Nannochloropsis gaditana)
TCATCAAGCTGCAGCGAAATATGTTCCTTGTTGTCATTGAAGTGCCTTCC
CCTCCTTTATCTCGACCCCTGCTTCCATCCGTACATGTTGTGAAATGAAT
GCAGACGAAGCGGATCAACGGGGCGTCACGCACAACTTATGACGGCATTA
ATCCGAAGCCACCCCGGGCATTGACTGACGTCCACCGGGGAATTTCTAGG
TTCTCTGACCGTCGCTGGAACAACACGCACGTGCAAATAATTATGCCCGC
ATCCTTATGGGAATGGGCGGTATGGCGGTCGTTTTTGCAACATTTTGTCC
GGACTTGGTTCATCAAGCTGCAGCGAAATATGTTCCTTGTTGTCATTGAA
GTGCCTTCCCCTCCTTTATCTCGACCCCTGCTTCCATCCGTACATGTTGT
GAAATGAATGCAGACGAAGCGGATCAACGGGGCGTCACGCACAACTTATG
ACGGCATTAATCCGAAGCCACCCCGGGCATTGACTGACGTCCACCGGGGA
ATTTCTAGGTTCTCTGACCGTCGCTGGAACAACACGCACGTGCAAATAAT
TATGCCCGCATCCTTATGGGAATGGGCGGTATGGCGGTCGTTTTTGCAAC
ATTTTGTCCGGACTTGGT

Synonyms

Publications