rna6566, rna6566 (mRNA) Nannochloropsis gaditana

Overview
Namerna6566
Unique Namerna6566
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length540
Alignment locationCM002468.1:809184..809637 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_103307g1.7636.mrna
Orig protein idgnl|cribi|Naga_103307g1.7636
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:809184..809637 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_103307g1gene6344Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24123.1cds6550Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6566rna6566-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6566 ID=rna6566|Name=rna6566|organism=Nannochloropsis gaditana|type=mRNA|length=540bp
CTCTCCTTCCCCTCCGCAACCTCCCTCCTTCCCTCCTTGCCTTTACAGAC
CCAAGATGACGGGCAGGGGGGAGACGTGCGGCAGGTGCCGTTCGAAGCCT
ACGAGGCCATTCGGTACGAGGACGGAATCGAGGCAGAGAGCGATGACGAC
GACGCCGACGATGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGGAGATTCCGTCTTAA
GCGAAGAGGGGGGAAAGGAAACCAGTGGGGGAGGAAGGTGGGAGAAGCGG
GAGCAGAGAGGGATGCAAGGGCTTATGTGTACTGTTATGGATAAACGAGA
AGGGGCGGATGAGGGCTTTGAAGGAGTTTTTGGAGCCGATGGAGACGGGC
GAGAGATGAGGGAAAGTTTGGGAGATGGCTGGGTAAGGAGTAGCAAAGCG
TTTTGACTCGGGCCATATCGACACGAAGTTTGAGACCTTTTGGTAGGTCA
TGGCGAATCACCAACGAAGAATTTTCGAGAAAGGAGTGTG
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protein sequence of rna6566

>rna6566-protein ID=rna6566-protein|Name=rna6566|organism=Nannochloropsis gaditana|type=polypeptide|length=123bp
FLFFPSRPPSLPPSLPQSSSAMRVRAPLSWIPPSTRGRYTTASSISCAED
SSEEKRWSAFPPGRYALLPPSLPPSLPPSLAFFPCRFQAASALPRWEQID
ENCNLAWSGGLSSFFLGGDWDKD
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mRNA from alignment at CM002468.1:809184..809637-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6566 ID=rna6566|Name=rna6566|organism=Nannochloropsis gaditana|type=mRNA|length=454bp|location=Sequence derived from alignment at CM002468.1:809184..809637- (Nannochloropsis gaditana)
TTTCTTTTCTTCCCCTCCCGCCCTCCCTCCCTCCCTCCTTCTCTCCCTCA
GTCTTCTTCCGCAATGAGGGTGAGGGCCCCCCTATCGTGGATCCCTCCAT
CAACCCGTGGCCGGTATACAACGGCTTCCTCGATTTCTTGTGCGGAGGAC
AGCTCGGAAGAAAAAAGATGGTCCGCTTTTCCTCCTGGCAGGTATGCCCT
CCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCGCCTTTTTTC
CTTGTCGATTCCAAGCGGCCTCAGCCCTTCCTCGGTGGGAACAAATCGAT
GAGAACTGCAACCTTGCGTGGAGTGGAGGGCTTTCGTCTTTTTTTTTGGG
GGGGGATTGGGATAAGGATTGATCGATTTCTTTGAGAGGGGATCGGGTTT
CATCGATCTCTTCGGGGCTCCTCCTCCTGCTCTCTTGTAACCGCAACCTC
CCCC
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Coding sequence (CDS) from alignment at CM002468.1:809184..809637-

>rna6566 ID=rna6566|Name=rna6566|organism=Nannochloropsis gaditana|type=CDS|length=372bp|location=Sequence derived from alignment at CM002468.1:809184..809637- (Nannochloropsis gaditana)
TTTCTTTTCTTCCCCTCCCGCCCTCCCTCCCTCCCTCCTTCTCTCCCTCA
GTCTTCTTCCGCAATGAGGGTGAGGGCCCCCCTATCGTGGATCCCTCCAT
CAACCCGTGGCCGGTATACAACGGCTTCCTCGATTTCTTGTGCGGAGGAC
AGCTCGGAAGAAAAAAGATGGTCCGCTTTTCCTCCTGGCAGGTATGCCCT
CCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCGCCTTTTTTC
CTTGTCGATTCCAAGCGGCCTCAGCCCTTCCTCGGTGGGAACAAATCGAT
GAGAACTGCAACCTTGCGTGGAGTGGAGGGCTTTCGTCTTTTTTTTTGGG
GGGGGATTGGGATAAGGATTGA
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Synonyms
Publications