rna6561, rna6561 (mRNA) Nannochloropsis gaditana

Overview
Namerna6561
Unique Namerna6561
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length618
Alignment locationCM002468.1:799911..800871 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101068g2.8437.mrna
Orig protein idgnl|cribi|Naga_101068g2.8437
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:799911..800871 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101068g2gene6339Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6561rna6561-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24129.1cds6545Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6561 ID=rna6561|Name=rna6561|organism=Nannochloropsis gaditana|type=mRNA|length=618bp
ATGTCTGACGCTTTGGTTTGGGAATGTATCAAGAACAATAACTGCTTTCT
CACGAAACGGGGCAGGACCGCGCGTGTCGGCGGCGTGCAGTTTTCGTCGG
AACCCTTCAACTTGGCCAAGAAGAACAGTTTCAAGAACAGCGGCCTCGCC
AACAGCAAGGCCGTGGACCTGTCCGTGGTGGAAGGCGGGAAATATGGGCC
GAAGATTACCATGGCGACCAAGGGTAAGAAATCGTTGAAGAAGCCCGCGA
CGCTGGCGAACGAAACACCGTTGAACAAGGCTTTTGCCACCTCTGTGAGG
AGCATCAAGGGCGTGACGGAGAAGTGCGGGTATAGGAAAGACTTGCAACC
GATCGCCTTGGCCCGGTACTCTTTGTTGAAGAGGTATACGCAAGTAAAGA
AAGGCCTGGCGAAGCCGATCCCCGTCAAGATGGGCCGCGTCAGCCGTAAG
GAGCAAGGGCGCTGTGGCGGTGATCTGGCGCTTTGCAAGGGTGCAGGCGG
GGAAGGTGCTTTGAAAGCGTCAGAACTAGAAAGCCGAAGTAAATCAGCTG
GAACTAGCAAGGGAAGAGATACTTTTACGGAAGGACCTCTGGATTTTGTT
TTTGGGGGGGGGGAATGA
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protein sequence of rna6561

>rna6561-protein ID=rna6561-protein|Name=rna6561|organism=Nannochloropsis gaditana|type=polypeptide|length=140bp
MGLSDYKVMTSSSKCTVYNSQHVIIDKMHALRVAAPYPKEAGAGHDSNTN
ARNEAIKEDEEQGNQSGQDERMQHCGNPREEQGKKPLSEQMGKNTSPGAL
RRQTTLPPDGFLTRVMVEEDIEEVATLCKEAFDAQNKLTK
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mRNA from alignment at CM002468.1:799911..800871+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6561 ID=rna6561|Name=rna6561|organism=Nannochloropsis gaditana|type=mRNA|length=961bp|location=Sequence derived from alignment at CM002468.1:799911..800871+ (Nannochloropsis gaditana)
AGTCCACCGCTCTCCTGATTTTCCTGCAGCGCAGACCTGTGCTCtcgacc
gccctccctcccttcctccctccctccctccctcccccgggtcCTCCGCC
GGTGAATCCCCAGCCCCAGTCCAGTCAGGAAAGGATCGAGGTCGCCGCGT
TAAAAAAAAACTAAATCGGGTCTTTTTTTCGAGGGACAAAAGTCGGCATG
GGCCTGTCGGACTATGTACGTGTTGTAGGACTTTTTTCTCACGTGATCTG
TGCAGGGGTTTGTTTTAAGCGGGTAAAAAGatgtttttcctccttgaagT
GCAGGCTACGTGTCGGGTAGTACTTTCATGGGAGGTCCGATTTTATCGGA
CTTGTTTTTTCATCTCACATGCTGTCACATCACTTTTTATTCCAGAAAGT
AATGACCTCGTCGAGTAAGTGCACTGTATATAACAGCCAGCACGTTATCA
TCGACAAAATGCACGCGCTGCGTGTGGCAGCGCCGTATCCCAAGGAAGCG
GGTGCGGGCCATGACAGCAATACGAACGCGAGGAATGAGGCCataaagga
ggacgaggaacaGGGAAATCAAAGTGGGCAGGATGAAAGGATGCAACATT
GCGGCAATCCACGGGAagaacaaggaaaaaaacCTTTGAGCGAACAGATG
GGCAAAAATACGTCTCCAGGTGCTCTTCGAAGGCAAACTACACGTAAGAA
ATTTGGGGATGGGAATCGGGAAAACTTGAAACACACTCCATACCGCGCTC
TACGCACTTGCAAATAAGTGTAAAGGTCTCTCAAGTACATGCACTCTCTA
CTGTCTCTTTATGTACCCGTATCTCGCGAAAGGCAGTGCCCCCCGACGGA
TTTCTCACCCGCGTGATGGTTGAGGAGGACATTGAAGAGGTCGCTACCCT
GTGCAAGGAGGCATTCGACGCGCAGAACAAACTCACAAAGTAGGATAAAA
AGaatgcaaga
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Coding sequence (CDS) from alignment at CM002468.1:799911..800871+

>rna6561 ID=rna6561|Name=rna6561|organism=Nannochloropsis gaditana|type=CDS|length=1269bp|location=Sequence derived from alignment at CM002468.1:799911..800871+ (Nannochloropsis gaditana)
ATGGGCCTGTCGGACTATAAAGTAATGACCTCGTCGAGTAAGTGCACTGT
ATATAACAGCCAGCACGTTATCATCGACAAAATGCACGCGCTGCGTGTGG
CAGCGCCGTATCCCAAGGAAGCGGGTGCGGGCCATGACAGCAATACGAAC
GCGAGGAATGAGGCCataaaggaggacgaggaacaGGGAAATCAAAGTGG
GCAGGATGAAAGGATGCAACATTGCGGCAATCCACGGGAagaacaaggaa
aaaaacCTTTGAGCGAACAGATGGGCAAAAATACGTCTCCAGGTGCTCTT
CGAAGGCAAACTACACTGCCCCCCGACGGATTTCTCACCCGCGTGATGGT
TGAGGAGGACATTGAAGAGGTCGCTACCCTGTGCAAGGAGGCATTCGACG
CGCAGAACAAACTCACAAAGTAGATGGGCCTGTCGGACTATAAAGTAATG
ACCTCGTCGAGTAAGTGCACTGTATATAACAGCCAGCACGTTATCATCGA
CAAAATGCACGCGCTGCGTGTGGCAGCGCCGTATCCCAAGGAAGCGGGTG
CGGGCCATGACAGCAATACGAACGCGAGGAATGAGGCCataaaggaggac
gaggaacaGGGAAATCAAAGTGGGCAGGATGAAAGGATGCAACATTGCGG
CAATCCACGGGAagaacaaggaaaaaaacCTTTGAGCGAACAGATGGGCA
AAAATACGTCTCCAGGTGCTCTTCGAAGGCAAACTACACTGCCCCCCGAC
GGATTTCTCACCCGCGTGATGGTTGAGGAGGACATTGAAGAGGTCGCTAC
CCTGTGCAAGGAGGCATTCGACGCGCAGAACAAACTCACAAAGTAGATGG
GCCTGTCGGACTATAAAGTAATGACCTCGTCGAGTAAGTGCACTGTATAT
AACAGCCAGCACGTTATCATCGACAAAATGCACGCGCTGCGTGTGGCAGC
GCCGTATCCCAAGGAAGCGGGTGCGGGCCATGACAGCAATACGAACGCGA
GGAATGAGGCCataaaggaggacgaggaacaGGGAAATCAAAGTGGGCAG
GATGAAAGGATGCAACATTGCGGCAATCCACGGGAagaacaaggaaaaaa
acCTTTGAGCGAACAGATGGGCAAAAATACGTCTCCAGGTGCTCTTCGAA
GGCAAACTACACTGCCCCCCGACGGATTTCTCACCCGCGTGATGGTTGAG
GAGGACATTGAAGAGGTCGCTACCCTGTGCAAGGAGGCATTCGACGCGCA
GAACAAACTCACAAAGTAG
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Synonyms
Publications