rna6554, rna6554 (mRNA) Nannochloropsis gaditana

Overview
Namerna6554
Unique Namerna6554
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length788
Alignment locationCM002468.1:783659..784568 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101759g1.2389.mrna
Orig protein idgnl|cribi|Naga_101759g1.2389
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:783659..784568 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101759g1gene6331Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24135.1cds6538Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6554rna6554-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6554 ID=rna6554|Name=rna6554|organism=Nannochloropsis gaditana|type=mRNA|length=788bp
TTAACATAAATCGCCTTCTATCATTTCCCGCATCAACTCATTCCCTCCCT
TACCAGCCCTATATGACAGTCGGGAAAATTGAATCCCCCTCGACACCTGC
GTCGGAAGATGCAGAGGTACTTGGGGAGGGGGACGCTGCAAGGGGAGAGA
ACTATCCAGAAGAAAAAGCAGAGAAGACGTCGACACTGCCGAAGGAGGTG
TTTTGGGAAGAGAAGCACGTTTGCTTTATACGCGGCTTGGTGAAAAAGAC
TGATTCCTTCGAACACGTGGTCATGGAGCACTTGAAGATGTCCGCCGTGT
ACTGGGCCCTGATGGGGATGGCGTTGATGGGTCGTAATTTGGAAGAAGAG
ATGGAGTTGAGCGAGATCGTGGAATGGGTTCTGGAATGCCAGCACCCAAA
CGGCGGCTTCGGCGGCAACCAAGGACATGACCCCCACCTTCTCTACACCT
TGTCAGCCGTGCAGATCCTCGCCATCGCGGATGCACTCGAGAAGATCGAT
CAGGACCGAGTGGCGGGCTACGTCCTAGGGTTGCAGCAGGCGGATGGCTC
CTTCGCTGGGGACGAGTGGGGCGAGATCGATACTCGTTTCTCGTACTGCG
CGCTGTCCACGCTGGCCATTATGGGCCGACTGCCTCGAGCTGGTGAGGGA
GGGAGAGAGGGAGGGAGGGAGGGAGGGAGGGAGGGGCAGGGAAATCGGGT
TGTACTGAATGGTCAATTTCCCCGCGGGCGGAAAATGGCGCTTGCATTGG
TTTTCCTCCTTGCTCTCACCCCGCGCCTCTTCCTCTTG
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protein sequence of rna6554

>rna6554-protein ID=rna6554-protein|Name=rna6554|organism=Nannochloropsis gaditana|type=polypeptide|length=203bp
RRRRRKEKKNARPASFPAFTFSFPTFLPLLGLPILCSTAIKASNPFPSHH
LSIPDWRTLLMKALALPSSPPASASGQDPPSCLTPPTRYSAFENILLLLS
LQEMKVLFPEVVGREGGKEVWVRELLQTRPVVVEAMTRTWEGKGGRRRAN
GGEEVKQEEGEGQGMMAFFGLIFPEEATADIQRHLFDAQESFAKEACRNL
VGL
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mRNA from alignment at CM002468.1:783659..784568-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6554 ID=rna6554|Name=rna6554|organism=Nannochloropsis gaditana|type=mRNA|length=910bp|location=Sequence derived from alignment at CM002468.1:783659..784568- (Nannochloropsis gaditana)
AGGAGGAGGAGGAGGAAGGAGAAGAAAAACGCTCGACCTGCTTCTTTCCC
CGCCTTCACCTTCTCTTTCCCTACCTTCCTTCCCCTCCTCGGCCTCCCCA
TCCTTTGTTCCACAGCCATCAAGGCCTCGAACCCCTTCCCTTCCCATCAT
CTCTCTATTCCCGACTGGCGAACTCTCCTCATGAAAGCCCTCGCCCTCCC
TTCCTCCCCCCCGGCCTCTGCATCGGGCCAGGATCCTCCCTCCTGCCTGA
CTCCTCCCACCCGGTACTCGGCTTTCGAGAACATTCTTCTCCTTCTGTCC
CTGCAGGAGATGAAAGTCCTCTTCCCGGAGGTGGTGGGGCGGGAGGGCGG
GAAGGAGGTGTGGGTCCGGGAGCTGTTGCAGACACGACCCGTGGTGGTGG
AGGCTATGACGCGGACGTGGGAGGGAAAGGGAGGAAGAAGGAGGGCAAAT
GGAGGGGAGGAGGTAAAGCAGGAGGAGGGAGAAGGGCAAGGGATGATGGC
ATTTTTCGGATTGATTTTTCCGGAAGAGGCCACCGCGGATATCCAAAGGC
ATTTATTTGACGCGCAGGAATCGTTTGCGAAGGAGGCATGCAGGAATTTG
GTGGGGCTTTGAAGGAAGAGAAAGAAGATAAAAAATATGAGATAGAGAAA
AAGATCTAAAGGAATGTTGAGTGATGAAGGGGCATTCGACAGGGACGCAT
GCGCATAGGACGGGGAGAGCGGATGCATGCCAGTAGAAATGAAGGAGAAG
GGATCTCCTTGTGTACCATGGGTCTCAACATGTCAATAATTGATAAAGTA
AGCATGAAGTCAATGTTTATTGTTCATGGGCAGCTTTTTTGGACCCGATT
GGTTAAACTGGAAATAAAATACGTTCCCACACGAAGGGAAAGCTGGTCGA
AGGTCTCTGG
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Coding sequence (CDS) from alignment at CM002468.1:783659..784568-

>rna6554 ID=rna6554|Name=rna6554|organism=Nannochloropsis gaditana|type=CDS|length=612bp|location=Sequence derived from alignment at CM002468.1:783659..784568- (Nannochloropsis gaditana)
AGGAGGAGGAGGAGGAAGGAGAAGAAAAACGCTCGACCTGCTTCTTTCCC
CGCCTTCACCTTCTCTTTCCCTACCTTCCTTCCCCTCCTCGGCCTCCCCA
TCCTTTGTTCCACAGCCATCAAGGCCTCGAACCCCTTCCCTTCCCATCAT
CTCTCTATTCCCGACTGGCGAACTCTCCTCATGAAAGCCCTCGCCCTCCC
TTCCTCCCCCCCGGCCTCTGCATCGGGCCAGGATCCTCCCTCCTGCCTGA
CTCCTCCCACCCGGTACTCGGCTTTCGAGAACATTCTTCTCCTTCTGTCC
CTGCAGGAGATGAAAGTCCTCTTCCCGGAGGTGGTGGGGCGGGAGGGCGG
GAAGGAGGTGTGGGTCCGGGAGCTGTTGCAGACACGACCCGTGGTGGTGG
AGGCTATGACGCGGACGTGGGAGGGAAAGGGAGGAAGAAGGAGGGCAAAT
GGAGGGGAGGAGGTAAAGCAGGAGGAGGGAGAAGGGCAAGGGATGATGGC
ATTTTTCGGATTGATTTTTCCGGAAGAGGCCACCGCGGATATCCAAAGGC
ATTTATTTGACGCGCAGGAATCGTTTGCGAAGGAGGCATGCAGGAATTTG
GTGGGGCTTTGA
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Synonyms
Publications