rna6549, rna6549 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6549
Unique Name	rna6549
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1119
Alignment location	CM002468.1:771115..772701 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100306g4.2063.mrna
Orig protein id	gnl\|cribi\|Naga_100306g4.2063
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002468.1	supercontig	CM002468.1:771115..772701 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100306g4	gene6327	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24142.1	cds6533	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6549	rna6549-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002468.1:771115..772701-
coding sequence from alignment at CM002468.1:771115..772701-

mRNA sequence

>rna6549 ID=rna6549|Name=rna6549|organism=Nannochloropsis gaditana|type=mRNA|length=1119bp
ATGGGCCAGAAGAAAGCCTCCCGCCCTTTTCCCCTTCTCGAACGCCCCCT
GTGCCACTGCCAATTCCTTGCCATCCTAGCATTACTCGCACCGGCGCGTG
CGTTTCTACTCCGTCCCTGCTCGCAATGGTACCTGCCGACTTCCCACCCA
TCGTCAATTCGTTCTTCGCTTCGATCCTCTGCGCCTCCCACTCCACCTTC
AGACAATGACGGCCCCGCACCCTCCCTCGAAAATGGACCCGCTTCTTCTC
CTTCCCCTGTTCCTTCCTCTCCTCCTACCCCTCCTCCTTCCCCTCCCACG
GCCAAGGAATATTTCTTCGGAACGGCCGGGGAGTTCGACGAGGATTTGGC
CTACCTCGGCATTTCTCGGCAACGCCTCTTGTTGAACGCGGGCGTGGCCA
CCACGCTCGCCCTGGGTGCCAATTTCGTCGGGGTGACAAGCGCGTTGTTA
AACACCTTCTCCACCCCGGAGACGATGTCGGATTGGAAACTGGACGTGCT
CTACCCCGTGCGCGGGTTTAAACGCTTTGTCGATACCGAGGACGGTTATG
AGTTCAGGTACCCACAATCGTGGCTGTCCGACCAAGCGATCCTCCTGGCA
GACACCCAAGCTCGCACTGCCACCTTGTCTTCGCCTTCCTCTCCCTCCGA
CCGCCCTCCGAGGGCCCCGCCCTCCTCGACCAGAGCGGTCCGACCGGATG
CGGCGTTTGGTCCCCCCGGAGGAAACCGGGAGGAGAATCTCTCGGTGATT
AAATCGGTCGTGATGCCGGGCTTTTCCTTGGCCGAGACGCTGGGACCCCC
GACAGCAGCGGCAGAGTTGCTCCTTTCTACAGCCATCGCCCCCCCTGGTT
CCGGAAAGGTCGCCAATTTGGTGATGGCGCAGGAAGAAACGCGAGATGGA
GGGGGGAAGACGTTGGAAAGGAAGGTGTATGTCTTCGAGTACCTGGTTGG
AAGGGAGGGAGGAAGGGATGGCGACCGGTCGCATAGTTTGAGTGTGATTG
CCCCACGGGAGAAGGAAAGCGCGTTGTTCACCTTGACCGTGTTAGCACCC
GAGAGACGGTGGGAGGATCGAGAAAAAGAGCTAAGGGAAGTGGCGTCCAG
TTTTCGATTGACGCGATGA

protein sequence of rna6549

>rna6549-protein ID=rna6549-protein|Name=rna6549|organism=Nannochloropsis gaditana|type=polypeptide|length=70bp
MSGFFQGGADRRIGFFWNPLRLCIYSRSPGLFNLKILLRSLETRLWPFSY
VLVVPLAYDCTILSRQKTSI

mRNA from alignment at CM002468.1:771115..772701-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6549 ID=rna6549|Name=rna6549|organism=Nannochloropsis gaditana|type=mRNA|length=1587bp|location=Sequence derived from alignment at CM002468.1:771115..772701- (Nannochloropsis gaditana)
CGCTGCGTGCACCGCTTTCAGTATTCGTGCTTCCCTCTCAATCGTACTGC
CCGTGAAAAAAGAGTGACCAGGAACACTTGCCGGACATGTCAGGATTTTT
TCAAGGCGGTGCTGATCGTCGAATAGGGTTTTTTTGGAATCCTCTTCGAC
TTTGCATCTACAGCCGGTCTCCGGGATTATTTAACTTGAAGATTCTTCTA
AGGTCCCTTGAAACTCGATTGTGGCCATTTTCTTATGTCTTAGTGGTGCC
GCTAGCGTATGACTGTACGATTCTTTCCAGACAGAAGACATCAATTTAAT
TGTACAACTTTCCTTTCCTTGGTATCGCTTCAGGACTGAAGATAGAGGAA
AGGAGGTACCGGAGGGAGGCTTCACGTATCGGAATTTTTTATGGATACTC
AAAGGTCAAAAACAAGATTGCGATAAGATCCTTGCAAAGGCGACTCCAAT
TGCTTTCGATGCTTCTCGGACCTGTATTTCTCGCACCTGAACCTCTCTCA
CCTGCGTCGACGCCTGTTGTGCAAAGTGTTTATCTACGCTCCCCTTGCTT
ATGCACGAGAAAATTGAATCCCTTGTCCTTTTTGTATTTGCTCCCACGTT
TTCGGAGTGATATATCGCATTTTCCTTCACTTTTGCAATAGATTCCTTAA
CGATGGGTTGTTATAAAACGTCAGGCTTGTTGCTCAAATTGCAGGAATAC
TTCTTAAGGACTAAGCATAACCTGTGATGCACAATCCGCTGAAGGCCCCT
AAAAATACCCGTCCAGGACGGGCATATCCTGCAAGTGGCGAATCAAGTCT
TTCGTATTTAAGGTTCTAATAGCTACGATGATCAAGGTAGAAAGCTGATA
TAATAGTGCCAGAGCTGTAATGGGCGAGAGCGCCATGGTTCCGGCCTGGC
GGGGAAAAGGCAATTCAAACACTTGACCGTCAAAAAGCACATCCTCTCAA
AACTGTACTTGTGGGATCAGGCCTGTTATTGTTGAACATCCACTTCAAGA
TGATGACTTGATAGTGTAAATCGGAGGGAATCAAGGGAGCATGCGGGTTA
AAAATTTCCTTCAGCTCCAGAAATGCGGACCGCAAACGGGAGGTCTAAGT
GGCAACCAGCCCGGTTAAAGAATAGGCAGAATATTGGCGTCTAGGAGTAA
CTTTCACACGGCGTACTTCAATGCGACGACAATAATAAGTTTTGGGACAG
GTCATCAAAGACGCCCGACCTGCCTGGCTTTCTCCACCTCGACCCTCCAT
CCTCCCTCCCAATCTTCTTTCTAATCTTGCAGGGCTACCGGTGATCTAGT
TTCTATGATGTGACAAAGGATATAGACGGGAGACTCACGGGAGGCTTTTT
TACTAGTGAATGAAGGCTGGTACGCTTTTGTATCGATATATATAGCCTGC
TGCTGCACTTTTCGTAAACGAAAGTTCCAATCAAAACCCAATAAGAAGAG
AGCGCCATATGTCCTTTCCACGCGCATTTGACAATTTGTTCAAAAAAGCT
TCTCATCGCGTCAATCGAAAACTGGACGCCACTTCCCTTAGCTCTTTTTC
TCGATCCTCCCACCGTCTCTCGGGTGCTAACACGGTC

Coding sequence (CDS) from alignment at CM002468.1:771115..772701-

>rna6549 ID=rna6549|Name=rna6549|organism=Nannochloropsis gaditana|type=CDS|length=213bp|location=Sequence derived from alignment at CM002468.1:771115..772701- (Nannochloropsis gaditana)
ATGTCAGGATTTTTTCAAGGCGGTGCTGATCGTCGAATAGGGTTTTTTTG
GAATCCTCTTCGACTTTGCATCTACAGCCGGTCTCCGGGATTATTTAACT
TGAAGATTCTTCTAAGGTCCCTTGAAACTCGATTGTGGCCATTTTCTTAT
GTCTTAGTGGTGCCGCTAGCGTATGACTGTACGATTCTTTCCAGACAGAA
GACATCAATTTAA

Synonyms

Publications