rna6545, rna6545 (mRNA) Nannochloropsis gaditana

Overview
Namerna6545
Unique Namerna6545
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length702
Alignment locationCM002468.1:762630..763462 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101535g1.5909.mrna
Orig protein idgnl|cribi|Naga_101535g1.5909
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:762630..763462 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101535g1gene6323Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24144.1cds6529Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6545rna6545-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6545 ID=rna6545|Name=rna6545|organism=Nannochloropsis gaditana|type=mRNA|length=702bp
CCTCCTCCCTCCCTCCCTGCTTTCCGCGTCCGTGGAGGAATTGAACAAAC
TGCTCACGGATGAGGTGGCCTTCTCCGTGTTCTTGTCGAACTTACGGGAG
GTGAAGGAGTGCAACAGGCAACTGGAAGCCATTCGTCGGACAAACGCCGA
CGTGGCTCGGGAAACGCTCGAGAAACGGTCGGCCGTTACGGCGTTGCGGG
AGGAAGTTAAGCAAACGCTGGACATTTGCAAGGACATCGAGAAGGCGTAC
AAGGAGAAAGTGAAAGGGGCCGGGGGCGGGACGGAGGGCGGGGTGGACGG
GGTGTGCCACCTCTTGGAGAGGCGGGTGGGGGAGAGTGAGCGAGGGAGCG
AGGAATGTGCCCGGGCCTTCGTCGCCGGCGAAAAGCCGTTGGAAGCCTGG
CAGTTTGAATATTTGAAAGAACGCAAGCTCTTCCACGAGAGGAGTGCCAA
GCTGGAGAAGATCCAACGCGTGCGAAGCGAAGGGCGGTAGCATGACGGGC
CCCCGCGCAGGGGAGGACGTAACGGAAATTCAAAAAAGCGGGAGTATGAA
ACCGTTAAGGAGGGGGGATGCCCTCAAAATGCTGAATGTGTCGAAAGGCT
GGACACATGTTCGTAAAGAAATTGCTTTCTGTAAGTCAGCGCGGTCCCAT
CGCGCGTATCCGGTAGGACACTGTGCTACGGTTACCCCTACCCGTCGCCA
CC
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protein sequence of rna6545

>rna6545-protein ID=rna6545-protein|Name=rna6545|organism=Nannochloropsis gaditana|type=polypeptide|length=124bp
MHFLPRKTVSERSVTHKAFRWSSISFSRLAHITNHPSAFPTGPSPPFLFP
SLPVFPPFLPPSIPPNPRTPLCSTSRSPPPLPQPSFASPSPTTSRTSPRP
SASWAWGSGMPGLTPLAPLSGTRS
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mRNA from alignment at CM002468.1:762630..763462-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6545 ID=rna6545|Name=rna6545|organism=Nannochloropsis gaditana|type=mRNA|length=833bp|location=Sequence derived from alignment at CM002468.1:762630..763462- (Nannochloropsis gaditana)
CGCAGGCACAACCAAGTGGCCCGCCAGTGTACGTGCATTGCTTGTGCCTG
GCTTCCGTCGCGTCGTCGAGCCGAGCATCGATTTGGTGTTCCTGGGTTTT
CTTTTTCCTGTGTTGCACCGCCTTGCCATGTTCCCTTTCGGTCGATCCCG
TCGACCTGACAGAGACTTGGATGCCCTCAAACGTCAACAAATAGAGGCAC
TCAAGCAAGCTGTGCCGACAGCTAGGGCAGTCAATTCGGTACGTTTACAA
ATATCGCAAGGGTTTATTCATCTACCTTTTTCGGACATGGTCTATGGTTC
CTGAGTGTTGAAATTTAAGTCTTCCGCAATGCATTTCTTGCCTCGGAAGA
CTGTGAGTGAGCGAAGTGTCACTCACAAAGCATTTCGTTGGAGCTCTATC
TCTTTCTCTAGATTAGCTCATATTACAAACCACCCATCAGCTTTTCCGAC
CGGTCCATCTCCTCCCTTCCTCTTTCCCTCCCTCCCTGTCTTCCCTCCCT
TCCTCCCTCCCTCCATCCCCCCCAATCCCAGGACTCCTCTCTGTTCGACC
TCCCGATCCCCTCCGCCTCTGCCACAGCCGTCCTTCGCGTCTCCCTCCCC
CACAACTTCCCGGACGAGCCCCCGTCCCTCCGCCTCCTGGGCCTGGGGGT
CCGGCATGCCTGGATTGACGCCACTGGCGCCGTTGTCCGGCACCCGAAGC
TGAGTCCCTGGCAATCCACCCACTCCCTCGCAGAGGTGTGCACGAGCGTC
ATGCAAGAGATCACGAAAACGGTGGGGGGTTCCCCGACGGTGGGCGTGGG
CGTGGCCGTTCAATGGGGTGGGGGAGGAGGAGG
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Coding sequence (CDS) from alignment at CM002468.1:762630..763462-

>rna6545 ID=rna6545|Name=rna6545|organism=Nannochloropsis gaditana|type=CDS|length=375bp|location=Sequence derived from alignment at CM002468.1:762630..763462- (Nannochloropsis gaditana)
ATGCATTTCTTGCCTCGGAAGACTGTGAGTGAGCGAAGTGTCACTCACAA
AGCATTTCGTTGGAGCTCTATCTCTTTCTCTAGATTAGCTCATATTACAA
ACCACCCATCAGCTTTTCCGACCGGTCCATCTCCTCCCTTCCTCTTTCCC
TCCCTCCCTGTCTTCCCTCCCTTCCTCCCTCCCTCCATCCCCCCCAATCC
CAGGACTCCTCTCTGTTCGACCTCCCGATCCCCTCCGCCTCTGCCACAGC
CGTCCTTCGCGTCTCCCTCCCCCACAACTTCCCGGACGAGCCCCCGTCCC
TCCGCCTCCTGGGCCTGGGGGTCCGGCATGCCTGGATTGACGCCACTGGC
GCCGTTGTCCGGCACCCGAAGCTGA
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Synonyms
Publications