rna6539, rna6539 (mRNA) Nannochloropsis gaditana

Overview
Namerna6539
Unique Namerna6539
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length593
Alignment locationCM002468.1:748839..749519 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101795g2.4208.mrna
Orig protein idgnl|cribi|Naga_101795g2.4208
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:748839..749519 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101795g2gene6317Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6539rna6539-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24150.1cds6523Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6539 ID=rna6539|Name=rna6539|organism=Nannochloropsis gaditana|type=mRNA|length=593bp
TGAACCCTTTACGGGATGACAGCCTCGTTCACGCGCGAGCGCGCTTTCGA
CGATGAGCCAGTGGAATAACCCGCAGTCTTCGCAAGAGGAGGTGACAAGG
GAAGAAAGGAAGCGACTGGCGCATGGGTGGGATGGAGGGCAGGCAAAAGA
GGAGAGGGAGGAAAACAAGGAGGAAAGAAAAGAGAAAGGACTAGACAAGG
AAGGAACCATCGAGGACAGGGACCAAGAACAGCAGTTTTTGGTGTCGGTG
CCCTGGTCGCACAAGACACGTTGCATCACGCTTTCTGTGCCGGACAAGAA
AGGAGGCATGGCTGCGGTCACTGCGGCGGAGATTGTGGAGGCTGTCCTGG
GTATGGATAACCTGATGACGGAGGCTCCGCGAATAAAGAGTGGAACACAG
GGGGTCGATGTGGCGCCCATGCCGACGTCTGCCATGTTGATAGAATGCGG
TGGAAAATGCTACCGACACCACGAAACGCTTCCTCTTTGCTTTCCATCCC
TCTCGACCTCCTCCTCCTCCTCCTCCTCTTGCTCCTCCTTCCTTATGGCT
CCCGTTCTTCGCCTTCATTCACCCTCATGGGGCCTGATGGGGG
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protein sequence of rna6539

>rna6539-protein ID=rna6539-protein|Name=rna6539|organism=Nannochloropsis gaditana|type=polypeptide|length=184bp
MSSLPVIPPLPPPLPPPPCPTLLQAATTMSLAFLGTARPVNASRGAEPMV
MESFPLAPACPTLFPGPSTQARSRGGNVSGLAYARTSTSPTCETTGPLLG
FFITLSLSALCFWRLVVFTSVALRYRWFPLPPPGPYADTERTVLLAGQRG
SSRPPSRPQPPQTLSRKLVFHFALFLAVTVDLPR
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mRNA from alignment at CM002468.1:748839..749519+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6539 ID=rna6539|Name=rna6539|organism=Nannochloropsis gaditana|type=mRNA|length=681bp|location=Sequence derived from alignment at CM002468.1:748839..749519+ (Nannochloropsis gaditana)
TCTCAACATTCAGGCACGTTCTCATGCCTTTCACAGCGGCAGGACTCGAC
GCACGCCTTCTGTGCTGTGTCCGAGGGAAAGATTTTGACCTGGATTTACC
CTGTGGCCGCCTACCTTTCAAAACTAATGTCTTCTTTGCCTGTGattcca
cctctccctcctcctttacctcctcccccgtgtcCCACGCTTCTTCAGGC
GGCCACCACCATGTCACTAGCCTTTCTGGGGACCGCAAGACCGGTGAACG
CCTCCAGAGGAGCGGAGCCCATGGTGATGGAGAGCTTTCCTCTGGCGCCC
GCCTGCCCGACTCTCTTCCCTGGACCCAGCACGCAGGCGCGAAGTAGAGG
GGGGAATGTGTCTGGCCTCGCCTATGCCCGCACGTCCACGAGCCCCACCT
GCGAAACAACCGGGCCCCTCCTCGGGTTTTTcatcaccctctccctttcc
gcctTGTGTTTCTGGCGCTTGGTCGTCTTTACCTCAGTGGCCTTGCGGTA
TCGCTGGTTTCCGCTTCCCCCACCCGGGCCTTACGCCGACACAGAACGCA
CCGTCCTACTCGCCGGACAAAGGGGcagctcccgccctccctcccgccct
cagcCACCCCAGACGCTGTCACGGAAGCTTGTGTTCCACTTCGCCCTGTT
TTTGGCCGTGACGGTGGACCTGCCCAGGTAG
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Coding sequence (CDS) from alignment at CM002468.1:748839..749519+

>rna6539 ID=rna6539|Name=rna6539|organism=Nannochloropsis gaditana|type=CDS|length=555bp|location=Sequence derived from alignment at CM002468.1:748839..749519+ (Nannochloropsis gaditana)
ATGTCTTCTTTGCCTGTGattccacctctccctcctcctttacctcctcc
cccgtgtcCCACGCTTCTTCAGGCGGCCACCACCATGTCACTAGCCTTTC
TGGGGACCGCAAGACCGGTGAACGCCTCCAGAGGAGCGGAGCCCATGGTG
ATGGAGAGCTTTCCTCTGGCGCCCGCCTGCCCGACTCTCTTCCCTGGACC
CAGCACGCAGGCGCGAAGTAGAGGGGGGAATGTGTCTGGCCTCGCCTATG
CCCGCACGTCCACGAGCCCCACCTGCGAAACAACCGGGCCCCTCCTCGGG
TTTTTcatcaccctctccctttccgcctTGTGTTTCTGGCGCTTGGTCGT
CTTTACCTCAGTGGCCTTGCGGTATCGCTGGTTTCCGCTTCCCCCACCCG
GGCCTTACGCCGACACAGAACGCACCGTCCTACTCGCCGGACAAAGGGGc
agctcccgccctccctcccgccctcagcCACCCCAGACGCTGTCACGGAA
GCTTGTGTTCCACTTCGCCCTGTTTTTGGCCGTGACGGTGGACCTGCCCA
GGTAG
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Synonyms
Publications