rna653, rna653 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna653
Unique Name	rna653
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1164
Alignment location	CM002456.1:87129..89510 +

Link to JBrowse

Properties


Property Name	Value
Product	carboxyl-terminal processing protease
Orig transcript id	gnl\|cribi\|Naga_100391g2.3407.mrna
Orig protein id	gnl\|cribi\|Naga_100391g2.3407
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:87129..89510 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100391g2	gene626	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna653	rna653-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30018.1	cds653	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002456.1:87129..89510+
coding sequence from alignment at CM002456.1:87129..89510+

mRNA sequence

>rna653 ID=rna653|Name=rna653|organism=Nannochloropsis gaditana|type=mRNA|length=1164bp
GCAAATTGCCCCGTTTGCGCCGGGAGATGCATGCCTGCACGGGCCCACTA
TCACATAAGGGACTTTACTCGGAATAAGAAGCTCGACCCCGTCTAATTTG
ATTCGCTCATTATTATCCTCTTCCTTATTCTGTTACCGCTCTCGCCCCAT
GTTCCTGCCAGGCTTTGCCTGCCCATCTCCCTGCTTTCACATGTTTTCCT
AAGTGGTAGCACAGGGAGGAGGCGCAAAAAGTGTCACAACGACTAGTGGA
ACCGACCGTTTTATGCCGTCCCTCCCCCTGCCCGCCCTCTCCATAAAGGG
GGCTAAAGCCAGAGAGTACAAAGCATTTGACGGCGGCGAACACAACTCTC
TCCCTTCCACCTTTTCTGATCCCACTGCATCTGCAAGCACTCACGCGAAT
GTTGGGCACGGAGACCCCGCCAGCACTGGCGGGGTTGGAGAGGCCTATCC
CACAGCCTGCGCGAGCGCCCACCGTCCTTCCTGGGGCCCGCAAGGGGCGC
GACACTCGTCTTTCGGGATAGGAAACGAAGGGCTGGACAGGAGCAGAAGA
GGGGATCAGGAAGGCAGGGGTTGCTGTAGGCGCATGACTTCGTTTCAAAT
ATCCTACCTGGTCGTCATGTTGGCAAGTATGTTTTACTTTATCAGCGATG
CCTTGGGGTCTCGCCGGGTGCTGCTCTGGCTGGAAGGCATCTTGGTCAGC
ACGCACCCCCAAACCGCAGGGATGACGACGGCCTTACTCCTGAGCCTTGG
CTCTGTCATGGTGGCGCTGGGCTTTCCCACCACATTTCTCGCGCTGTTGG
GGGGGCATGTGTACAGGTAGGGCTTGAGGGAGGGAGGGAGGGAGGAAGGG
AGGCAGGACGGCCCGGTGTCGGTAGAGTCGTCCTGATGCAAGTTTGGCTT
CCCAGCGTGCTTAGCAGCGTTGCTTTTTGATGCGTCACACTATGCATTAG
GATGTCGCCTTATTCTCTCACTTCCCCCCTTCTTTCTTACCTGCGTCGGC
TGGGAAGGCCGCCACATCCCCCCCTCCCGGAAGCTCTCTCCCTCCTCTTT
CCTTTGTGCGACTGGGCCCCAGGGCCTCTTTCGGCGCTTTGCTTCCCGTT
CTTTCCCTTCTTCCTCCCCCCCCAACATTTTGCATGTCGCGCCTTGCGTC
CGTTCCCTCTCCCC

protein sequence of rna653

>rna653-protein ID=rna653-protein|Name=rna653|organism=Nannochloropsis gaditana|type=polypeptide|length=542bp
MAACSKRREPHRTVRGSLLPPCLGTLVFLLLQPQIADTFRIRHTSTQTIL
LSGCSATSVIRRWGSMTMEEGQENCNEMIKIRALRHYWPKSKGFKSLQAL
SKLAPAFWGLFLGVRPLYPLPQAAYAGPSSPATTGTTATPPVFSVTSPNF
PPTQAAADTDDLFDEVWKLTSKFYLDRSFGGNDWGQARADLRSQGKLPGD
SASETMATKKLLKKLGDKYTQLLSPYMYMAMSRFDPIGAGFMLSVDDDGY
FCVSSDPRDGTRAAKERVEKGDKILEIEGVAIKGKSVFDAVDLITKEDKT
DVRLTIQSKRDPAAAPRVLTLPREFNTVSNPVTKMQLTTAEDGRKVGYVK
LREFNSLAKEKVREALTSLESQGAEAYVIDLRGNPGGSVQAAVSVASLFL
PEDQIVTFIQDATGNKLPLKTQGAAAVPRDPLVVWTDRKSASASEILASA
LHDNCRAVLMGQRTFGKGLVQGVFGLNDGKGLVMTVAKYETPRGASIQGT
GIFPDIETVIPSSILGEQDISVVRGEDFSLKDRICLDRGGKQ

mRNA from alignment at CM002456.1:87129..89510+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna653 ID=rna653|Name=rna653|organism=Nannochloropsis gaditana|type=mRNA|length=2382bp|location=Sequence derived from alignment at CM002456.1:87129..89510+ (Nannochloropsis gaditana)
cctcctccctgtgctaCCACTTAGGAAAACATGTGAAAGCAGGGAGATGG
GCAGGCAAAGCCTGGCAGGAACATGGGGCGAGAGCGGTAACAGAATAAGG
AAGAGGATAATAATGAGCGAATCAAATTAGACGGGGTCGAGCTTCTTATT
CCGAGTAAAGTCCCTTATGTGATAGTGGGCCCGTGCAGGCATGCATCTCC
CGGCGCAAACGGGGCAATTTGCTTGGTGATTACCATTTAACTCGCGCACT
CCTTGCGTCGTGGCGGTGGAAATCCTGGTCTATGAAGTCCAAGACACGCT
AAGCAGACAGTGGTTGAGGTGCACAGGCGACGCAAGCGATCCTGCTGCCC
AATTAAAACCTGCAACAAACTCTACTCGTGCCCGCCCACACACGCAGTTT
TGTCATCAAAGTGACATGAACTGAACACTGACGCACCAACACCCACAATT
ACGACCCCACAATTACGAATTTAGACGTTCGAACGGTGCCTGTCGATGGC
GGCGTGttcaaaaagaagagagccACACAGGACGGTCAGGGgtagcctcc
tccccccttgtcttGGGACTCTCGTGTTTCTCCTTTTGCAGCCCCAAATC
GCGGACACCTTTAGAATAAGACACACTTCCACCCAAACAATCCTTCTTTC
TGGCTGCTCTGCTACGTCGGTTATCAGAAGATGGGGTTCAATGacgatgg
aagaggggcaggaaAACTGCAATGAGATGATTAAAATAAGAGCGTTGCGA
CATTATTGGCCCAAAAGTAAGGGCTTCAAATCATTGCAAGCATTGAGCAA
GCTTGCACCTGCGTTTTGGGGCCTTTTCTTGGGCGTGCGCCCTCtttatc
ctcttcctcaggcCGCCTACGCCGGCCCAAGCAGCCCAGCGACGACCGGC
ACCACCGCTACTCCCCCTGTTTTCTCCGTCACTTCGCccaatttcccccc
cacccaagCAGCTGCGGACACAGACGATCTCTTTGACGAGGTCTGGAAAC
TGACTTCCAAGTTTTACCTGGACAGGAGTTTCGGAGGGAACGACTGGGGA
CAGGCGCGGGCTGACTTACGGAGTCAGGGGAAACTACCTGGAGACAGCGC
CAGTGAGACCATGGCCACGAAAAAACTGTTGAAAAAGCTTGGAGATAAAT
ACACCcagcttctctccccttaCATGTACATGGCCATGAGCCGTTTCGAC
CCGATCGGCGCCGGCTTCATGCTCTCGGTGGACGACGACGGGTATTTTTG
CGTGTCCTCCGACCCCCGAGACGGGACCCGGGCCGCCAAGGAACGCGtgg
aaaaaggggacaagATTCTAGAAATCGAAGGTGTGGCGATCAAGGGGAAA
AGCGTCTTTGACGCGGTGGATCTGATCaccaaggaggacaagacgGACGT
GCGGCTGACCATTCAATCCAAGCGGGATCCTGCGGCcgccccccgcgtcc
tcacGTTGCCCCGGGAGTTCAACACCGTCTCAAATCCAGGTAGGGCAATA
GCCTCGCGCACAAAAGTTACGGGCGTAGTAGCCGAGAAGATGGAAGGTCC
CAGGAAACATCAGGCGATTGTGCTTTCTTTATACCGTTGTCCACACGTGC
ATTTTCAACTTCTCCATTTCTTTCAGTCACCAAGATGCAGCTTACCACTG
CCGAGGACGGGCGCAAGGTCGGGTATGTAAAACTCCGAGAATTCAACTCT
TTGGCCAAGGAAAAAGTGCGCGAAGCACTAACCTCCCTCGAAAGCCAGGG
CGCCGAGGCCTACGTCATCGATTTACGCGGGAATCCAGGTGGATCTGTGC
AAGCGGCGGTATCAGTAGCGTCGTTATTCCTACCCGAGGACCAAATTGTC
ACTTTCATTCAAGACGCTACCGGCAACAAGCTACCTCTGAAGACTCAGGG
TGCGGCCGCCGTTCCTCGGGACCCTCTGGTGGTATGGACCGATAGAAAGT
CCGCCAGTGCTTCCGAGATCTTGGCCAGCGCATTGCATGACAATTGTCGC
GCGGTGCTGATGGGCCAGAGGACTTTTGGAAAAGGCTTAGTTCAAGGAGT
GTTTGGGTTGAACGATGGGAAGGGCCTGGTGATGACTGTCGCGAAATATG
AAACCCCACGGGGGGCGTCCATTCAGGGGACTGGTATCTTTCCGGATATT
GAAACAGTCATTCCAAGTAGTATTTTAGGGGAGCAGGATATTAGCGTGGT
CCGAGGGGAGGACTTCAGCTTGAAGGATAGGATCTGCTTGGACAGAGGCG
GGAAGCAATGAGGATTTGGAGGCAGAAACAAACACGACAAAGAAATTAAT
TTCACTGTGAAGTTCTTAATCACTCGTTCAAAAGCATTGGTAATACATCC
AGTCAGGAAAAGGCCCTTCACACACACAGTGA

Coding sequence (CDS) from alignment at CM002456.1:87129..89510+

>rna653 ID=rna653|Name=rna653|organism=Nannochloropsis gaditana|type=CDS|length=3258bp|location=Sequence derived from alignment at CM002456.1:87129..89510+ (Nannochloropsis gaditana)
ATGGCGGCGTGttcaaaaagaagagagccACACAGGACGGTCAGGGgtag
cctcctccccccttgtcttGGGACTCTCGTGTTTCTCCTTTTGCAGCCCC
AAATCGCGGACACCTTTAGAATAAGACACACTTCCACCCAAACAATCCTT
CTTTCTGGCTGCTCTGCTACGTCGGTTATCAGAAGATGGGGTTCAATGac
gatggaagaggggcaggaaAACTGCAATGAGATGATTAAAATAAGAGCGT
TGCGACATTATTGGCCCAAAAGTAAGGGCTTCAAATCATTGCAAGCATTG
AGCAAGCTTGCACCTGCGTTTTGGGGCCTTTTCTTGGGCGTGCGCCCTCt
ttatcctcttcctcaggcCGCCTACGCCGGCCCAAGCAGCCCAGCGACGA
CCGGCACCACCGCTACTCCCCCTGTTTTCTCCGTCACTTCGCccaatttc
ccccccacccaagCAGCTGCGGACACAGACGATCTCTTTGACGAGGTCTG
GAAACTGACTTCCAAGTTTTACCTGGACAGGAGTTTCGGAGGGAACGACT
GGGGACAGGCGCGGGCTGACTTACGGAGTCAGGGGAAACTACCTGGAGAC
AGCGCCAGTGAGACCATGGCCACGAAAAAACTGTTGAAAAAGCTTGGAGA
TAAATACACCcagcttctctccccttaCATGTACATGGCCATGAGCCGTT
TCGACCCGATCGGCGCCGGCTTCATGCTCTCGGTGGACGACGACGGGTAT
TTTTGCGTGTCCTCCGACCCCCGAGACGGGACCCGGGCCGCCAAGGAACG
CGtggaaaaaggggacaagATTCTAGAAATCGAAGGTGTGGCGATCAAGG
GGAAAAGCGTCTTTGACGCGGTGGATCTGATCaccaaggaggacaagacg
GACGTGCGGCTGACCATTCAATCCAAGCGGGATCCTGCGGCcgccccccg
cgtcctcacGTTGCCCCGGGAGTTCAACACCGTCTCAAATCCAGTCACCA
AGATGCAGCTTACCACTGCCGAGGACGGGCGCAAGGTCGGGTATGTAAAA
CTCCGAGAATTCAACTCTTTGGCCAAGGAAAAAGTGCGCGAAGCACTAAC
CTCCCTCGAAAGCCAGGGCGCCGAGGCCTACGTCATCGATTTACGCGGGA
ATCCAGGTGGATCTGTGCAAGCGGCGGTATCAGTAGCGTCGTTATTCCTA
CCCGAGGACCAAATTGTCACTTTCATTCAAGACGCTACCGGCAACAAGCT
ACCTCTGAAGACTCAGGGTGCGGCCGCCGTTCCTCGGGACCCTCTGGTGG
TATGGACCGATAGAAAGTCCGCCAGTGCTTCCGAGATCTTGGCCAGCGCA
TTGCATGACAATTGTCGCGCGGTGCTGATGGGCCAGAGGACTTTTGGAAA
AGGCTTAGTTCAAGGAGTGTTTGGGTTGAACGATGGGAAGGGCCTGGTGA
TGACTGTCGCGAAATATGAAACCCCACGGGGGGCGTCCATTCAGGGGACT
GGTATCTTTCCGGATATTGAAACAGTCATTCCAAGTAGTATTTTAGGGGA
GCAGGATATTAGCGTGGTCCGAGGGGAGGACTTCAGCTTGAAGGATAGGA
TCTGCTTGGACAGAGGCGGGAAGCAATGAATGGCGGCGTGttcaaaaaga
agagagccACACAGGACGGTCAGGGgtagcctcctccccccttgtcttGG
GACTCTCGTGTTTCTCCTTTTGCAGCCCCAAATCGCGGACACCTTTAGAA
TAAGACACACTTCCACCCAAACAATCCTTCTTTCTGGCTGCTCTGCTACG
TCGGTTATCAGAAGATGGGGTTCAATGacgatggaagaggggcaggaaAA
CTGCAATGAGATGATTAAAATAAGAGCGTTGCGACATTATTGGCCCAAAA
GTAAGGGCTTCAAATCATTGCAAGCATTGAGCAAGCTTGCACCTGCGTTT
TGGGGCCTTTTCTTGGGCGTGCGCCCTCtttatcctcttcctcaggcCGC
CTACGCCGGCCCAAGCAGCCCAGCGACGACCGGCACCACCGCTACTCCCC
CTGTTTTCTCCGTCACTTCGCccaatttcccccccacccaagCAGCTGCG
GACACAGACGATCTCTTTGACGAGGTCTGGAAACTGACTTCCAAGTTTTA
CCTGGACAGGAGTTTCGGAGGGAACGACTGGGGACAGGCGCGGGCTGACT
TACGGAGTCAGGGGAAACTACCTGGAGACAGCGCCAGTGAGACCATGGCC
ACGAAAAAACTGTTGAAAAAGCTTGGAGATAAATACACCcagcttctctc
cccttaCATGTACATGGCCATGAGCCGTTTCGACCCGATCGGCGCCGGCT
TCATGCTCTCGGTGGACGACGACGGGTATTTTTGCGTGTCCTCCGACCCC
CGAGACGGGACCCGGGCCGCCAAGGAACGCGtggaaaaaggggacaagAT
TCTAGAAATCGAAGGTGTGGCGATCAAGGGGAAAAGCGTCTTTGACGCGG
TGGATCTGATCaccaaggaggacaagacgGACGTGCGGCTGACCATTCAA
TCCAAGCGGGATCCTGCGGCcgccccccgcgtcctcacGTTGCCCCGGGA
GTTCAACACCGTCTCAAATCCAGTCACCAAGATGCAGCTTACCACTGCCG
AGGACGGGCGCAAGGTCGGGTATGTAAAACTCCGAGAATTCAACTCTTTG
GCCAAGGAAAAAGTGCGCGAAGCACTAACCTCCCTCGAAAGCCAGGGCGC
CGAGGCCTACGTCATCGATTTACGCGGGAATCCAGGTGGATCTGTGCAAG
CGGCGGTATCAGTAGCGTCGTTATTCCTACCCGAGGACCAAATTGTCACT
TTCATTCAAGACGCTACCGGCAACAAGCTACCTCTGAAGACTCAGGGTGC
GGCCGCCGTTCCTCGGGACCCTCTGGTGGTATGGACCGATAGAAAGTCCG
CCAGTGCTTCCGAGATCTTGGCCAGCGCATTGCATGACAATTGTCGCGCG
GTGCTGATGGGCCAGAGGACTTTTGGAAAAGGCTTAGTTCAAGGAGTGTT
TGGGTTGAACGATGGGAAGGGCCTGGTGATGACTGTCGCGAAATATGAAA
CCCCACGGGGGGCGTCCATTCAGGGGACTGGTATCTTTCCGGATATTGAA
ACAGTCATTCCAAGTAGTATTTTAGGGGAGCAGGATATTAGCGTGGTCCG
AGGGGAGGACTTCAGCTTGAAGGATAGGATCTGCTTGGACAGAGGCGGGA
AGCAATGA

Synonyms

Publications