rna6526, rna6526 (mRNA) Nannochloropsis gaditana

Overview
Namerna6526
Unique Namerna6526
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1629
Alignment locationCM002468.1:721937..723731 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100532g4.2619.mrna
Orig protein idgnl|cribi|Naga_100532g4.2619
GbkeymRNA
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:721937..723731 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100532g4gene6305Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6526rna6526-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24163.1cds6510Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6526 ID=rna6526|Name=rna6526|organism=Nannochloropsis gaditana|type=mRNA|length=1629bp
GAAGCCTAACGCATACACTCACATAAGCTTTGTGCTCTGCTTGTACGTTG
TAAAAAAAGCCGTGGAAAGACGCAGGAGCTGTAAGGGACGTATCTATTCC
TGAACCTTCCTGACCTTTCCGAATTTGTTCGAATATTTACTAATCTGGGC
CCCAATAATCTTGCATCACAGCACTCTATCAACTCAAATGACGCGTCAAC
TTTCCATGGTATGCGCCATGGTGTTCGCCTACCTTTGCCTTTCTTCAGGT
CAACATGTCAAGCAGAGCTCCTCCCAAGTTCCTGTCAGTAGTGCTGTTGA
AGGGATTGAAGGGGCCGGGGGCGTCTCTTGGAAAACTGTCACAGGGAAAA
TCGATGATAAGGGCACCACTACAATCGAAGTGGAGGTCACGAACAAGAAT
AACATGGCGATGGAAGCACTCACGGCCCCCGCAAACGGAAAGTATGACGA
GGAGGTGATGTACACTGCAACCGACAAGGTGGGGGCTGCGGCAGGGCTTG
TGAACCGTCCCAACCGCGGCACGGGCGATAGGGCTGTCGAGGTGGAGGAG
GGAGACAAGGTGGGGGCTGCGGCAGGGCTTGTGAACCGTCCCAACCGCGG
CACGGGCAACAGGGCTGTCGAGGTGGAGGAGGGAGACAAGGTGGGGGCTG
CGGCAGGGCTTGTGAACCGTCCCAACCGCGGCACGGGCGGTAGGGCTGTC
GAGGTGGAAGAGAAGGCGGCAGAGCAAGAGACTGGGGGGGCTCGTCGATT
GCGTGGGGCTTAGGATGCGTTGTGTTCCGTAACGGACGGCTTCGCATTTC
ATTATGATGCAAATGGACAAAGTCGCAAAGCTTCAAGTCAACACGAATTG
GGGATGTGAGCGACAAATACATGTAAAATATGCAGTGTAAACAATAAAAT
TTTCATCTTTGTGCGATGTACCTATACATACTCAAACAACGGTGACGCAC
GCATGCAATAAAGCAATGGAGAAAATCGTGGCTCAATACGCAGGCCTGTC
TGATTCTTAGGATACTTTTTAGATCAAGATATGGCACCAATCGAATAAGG
ACAAGTTGTGAGGAATGAAAAGGAGAATCGAAGTTAGCAGTGGCGAGACC
AGAACAATTATGGGCGCAGAAAATTCACGAGAAAATACCGCGCACGTTGT
TGTTTTCCATCGCTTGTTTTCCGGTGGATCTGAAGGGGGGGACTTTAAGA
TGGATTGTCATGTACACAGAAGCAGCCAGGGAGTCAAGCGGATCTCCAAA
AACCACGATTTCTACCTCCAATCCACGATTACGTCCTCGATGCAGGATAA
TATTTATTTCATTCAAGAATCTTTTTACAAGAATGTGGACAAAATAAGAC
TCGAAAACAAAAGGGGACTCTCGATCAAAAGTTTCCAAAGCGCCGGATGA
ATTCCCAGTAGGCGAGGAGGGATTGTATCATCAGCGTCAACACCGTGCCC
GCCTTCTGCTTGTTGGTCCGGCAACACGTTTCCGGTATTGAGCTGCTTGC
TTTACACACATTTCAACTTCTGTCACCATCATGCCCCGGGAATATGTTTC
AAGGAAGGCTCTCACCGCCAAGAAACCATGAGGAACTTCAAAGATAACGA
AGAAAAGAATGTTGATGTACGTTTCAGCA
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protein sequence of rna6526

>rna6526-protein ID=rna6526-protein|Name=rna6526|organism=Nannochloropsis gaditana|type=polypeptide|length=190bp
MTRQLSMVCAMVFAYLCLSSGQHVKSSSQVPVSSAVEGIEGAGGVSWKTV
TGKIDDKGTTTIEVEVTNKNNMAMEALTAPANGKYDEEVMYTATDKVGAA
AGLVNRPNRGTGDRAVEVEEGDKVGAAAGLVNRPNRGTGNRAVEVEEGDK
VGAAAGLVNRPNRGTGGRAVEVEEKAAEQETGGARRLRGA
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mRNA from alignment at CM002468.1:721937..723731+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6526 ID=rna6526|Name=rna6526|organism=Nannochloropsis gaditana|type=mRNA|length=1795bp|location=Sequence derived from alignment at CM002468.1:721937..723731+ (Nannochloropsis gaditana)
GAAGCCTAACGCATACACTCACATAAGCTTTGTGCTCTGCTTGTACGTTG
TAAAAAAAGCCGTGGAAAGACGCAGGAGCTGTAAGGGACGTATCTATTCC
TGAACCTTCCTGACCTTTCCGAATTTGTTCGAATATTTACTAATCTGGGC
CCCAATAATCTTGCATCACAGCACTCTATCAACTCAAATGACGCGTCAAC
TTTCCATGGTATGCGCCATGGTGTTCGCCTACCTTTGCCTTTCTTCAGGT
CAACATGTCAAGGTGAGCAACAAAATATTTTTTATGCCAGAAGACGTCAA
ACTCTCTTCAGATGATTATACGGACGTCCGCAGGAGTCATCACTTCTCTA
TGGATGCAAAGCAAAAACAACAATAAAAAGCATCTCACGCTGCTCTCACG
CCCTCGGCGGGGACTCTTCGCATAACAGCAGAGCTCCTCCCAAGTTCCTG
TCAGTAGTGCTGTTGAAGGGATtgaaggggccgggggcgtcTCTTGGAAA
ACTGTCACAGGGAAAATCGATGATAAGGGCACCACTACAATCGAAGTGGA
GGTCACGAACAAGAATAACATGGCGATGGAAGCACTCACGGCCCCCGCAA
ACGGAAAGTatgacgaggaggtgatgTACACTGCAACCGACAAGGTGGGG
GCTGCGGCAGGGCTTGTGAACCGTCCCAACCGCGGCACGGGCGATAGGGc
tgtcgaggtggaggagggagacaaggtggGGGCTGCGGCAGGGCTTGTGA
ACCGTCCCAACCGCGGCACGGGCAACAGGGctgtcgaggtggaggaggga
gacaaggtggGGGCTGCGGCAGGGCTTGTGAACCGTCCCAACCGCGGCAC
GGGCGGTAGGGCTGTcgaggtggaagagaaggcggcaGAGCAAGAGACTG
GGGGGGCTCGTCGATTGCGTGGGGCTTAGGATGCGTTGTGTTCCGTAACG
GACGGCTTCGCATTTCATTATGATGCAAATGGACAAAGTCGCAAAGCTTC
AAGTCAACACGAATTGGGGATGTGAGCGACAAATACATGTAAAATATGCA
GTGTAAACAATAAAATTTTCATCTTTGTGCGATGTACCTATACATACTCA
AACAACGGTGACGCACGCATGCAATAAAGCAATGGAGAAAATCGTGGCTC
AATACGCAGGCCTGTCTGATTCTTAGGATACTTTTTAGATCAAGATATGG
CACCAATCGAATAAGGACAAGTTGTGAGGAATGAAAAGGAGAATCGAAGT
TAGCAGTGGCGAGACCAGAACAATTATGGGCGCAGAAAATTCACGAGAAA
ATACCGCGCACGTTGTTGTTTTCCATCGCTTGTTTTCCGGTGGATCTGAA
GGGGGGGACTTTAAGATGGATTGTCATGTACACAGAAGCAGCCAGGGAGT
CAAGCGGATCTCCAAAAACCACGATTTCTACCTCCAATCCACGATTACGT
CCTCGATGCAGGATAATATTTATTTCATTCAAGAATCTTTTTACAAGAAT
GTGGACAAAATAAGACTCGAAAACAAAAGGGGACTCTCGATCAAAAGTTT
CCAAAGCGCCGGATGAATTCCCAGTaggcgaggagggattgTATCATCAG
CGTCAACACCGTGCCCGCCTTCTGCTTGTTGGTCCGGCAACACGTTTCCG
GTATTGAGCTGCTTGCTTTACACACATTTCAACTTCTGTCACCATCATGC
CCCGGGAATATGTTTCAAGGAAGGCTCTCACCGCCAAGAAACCATGAGGA
ACTTCAAAGATAACGAAGAAAAGAATGTTGATGTACGTTTCAGCA
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Coding sequence (CDS) from alignment at CM002468.1:721937..723731+

>rna6526 ID=rna6526|Name=rna6526|organism=Nannochloropsis gaditana|type=CDS|length=1146bp|location=Sequence derived from alignment at CM002468.1:721937..723731+ (Nannochloropsis gaditana)
ATGACGCGTCAACTTTCCATGGTATGCGCCATGGTGTTCGCCTACCTTTG
CCTTTCTTCAGGTCAACATGTCAAGAGCTCCTCCCAAGTTCCTGTCAGTA
GTGCTGTTGAAGGGATtgaaggggccgggggcgtcTCTTGGAAAACTGTC
ACAGGGAAAATCGATGATAAGGGCACCACTACAATCGAAGTGGAGGTCAC
GAACAAGAATAACATGGCGATGGAAGCACTCACGGCCCCCGCAAACGGAA
AGTatgacgaggaggtgatgTACACTGCAACCGACAAGGTGGGGGCTGCG
GCAGGGCTTGTGAACCGTCCCAACCGCGGCACGGGCGATAGGGctgtcga
ggtggaggagggagacaaggtggGGGCTGCGGCAGGGCTTGTGAACCGTC
CCAACCGCGGCACGGGCAACAGGGctgtcgaggtggaggagggagacaag
gtggGGGCTGCGGCAGGGCTTGTGAACCGTCCCAACCGCGGCACGGGCGG
TAGGGCTGTcgaggtggaagagaaggcggcaGAGCAAGAGACTGGGGGGG
CTCGTCGATTGCGTGGGGCTTAGATGACGCGTCAACTTTCCATGGTATGC
GCCATGGTGTTCGCCTACCTTTGCCTTTCTTCAGGTCAACATGTCAAGAG
CTCCTCCCAAGTTCCTGTCAGTAGTGCTGTTGAAGGGATtgaaggggccg
ggggcgtcTCTTGGAAAACTGTCACAGGGAAAATCGATGATAAGGGCACC
ACTACAATCGAAGTGGAGGTCACGAACAAGAATAACATGGCGATGGAAGC
ACTCACGGCCCCCGCAAACGGAAAGTatgacgaggaggtgatgTACACTG
CAACCGACAAGGTGGGGGCTGCGGCAGGGCTTGTGAACCGTCCCAACCGC
GGCACGGGCGATAGGGctgtcgaggtggaggagggagacaaggtggGGGC
TGCGGCAGGGCTTGTGAACCGTCCCAACCGCGGCACGGGCAACAGGGctg
tcgaggtggaggagggagacaaggtggGGGCTGCGGCAGGGCTTGTGAAC
CGTCCCAACCGCGGCACGGGCGGTAGGGCTGTcgaggtggaagagaaggc
ggcaGAGCAAGAGACTGGGGGGGCTCGTCGATTGCGTGGGGCTTAG
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Synonyms
Publications