rna6508, rna6508 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6508
Unique Name	rna6508
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3308
Alignment location	CM002468.1:675728..678213 +

Link to JBrowse

Properties


Property Name	Value
Product	n-acetyltransferase 9
Orig transcript id	gnl\|cribi\|Naga_100552g2.9952.mrna
Orig protein id	gnl\|cribi\|Naga_100552g2.9952
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002468.1	supercontig	CM002468.1:675728..678213 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100552g2	gene6288	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6508	rna6508-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24181.1	cds6492	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002468.1:675728..678213+
coding sequence from alignment at CM002468.1:675728..678213+

mRNA sequence

>rna6508 ID=rna6508|Name=rna6508|organism=Nannochloropsis gaditana|type=mRNA|length=3308bp
AAAATTCGGTGCCAATCCATACGTCTGCGCTACCCACACGCAATCACGCA
GTCTGTTCCTTTGCAACAGGCTAAGAACAGTGCACCATGTGGTTTTTGAT
CCCATGCGGCTAAATTGAAAAACGTAAATCGTCCTGGGGGGGATCGCGGG
CAGAGATGCCAGTCCGTACGTTCCTTGTTGCTTTGACGGCAAATGTTCTG
CTTTGGCCGACAATTGATAAATTGGAAGCTATTTATGTATAAGAGAGGAG
CTGAGGGTATATTTGGAGCCCTAAGACAGCTAATATGACCGAATTTTATC
AACAAACCGGCACCATTATTGCGCTTGCTCACTCTGAGAGCGTACTTCCT
TATGAACCACTCTTCCTGCTGTGCAAAACAAGGAGCATGGGAAAAAAAAA
CCACAATGTGTTATTATCTGAACCCACTCTTTTCAAGTGCTTGTTGCTGT
GGCGCCGCTTCATTTCCTCATCTCCTGTACATTTTCCTACCTCCATATAT
ATTCCGCGCCAGTTTGTCCCCCTCAGTCTCTCAACCCATCGGGATTTACA
TTTCTTTCTTCATCTGTCCTGGGATATTATTATTCAGTCCTGCAGTGACC
TTGCCGTTCCTTCGGGCAAATCAATTATTCATCGAGCCAACGTTTCAAAA
CAAGCTTGCATTCCCAGATCGCGAACACACCAGGGAATCTACAACCAGCT
GTCTACCGTGCATGAAGGCCGCCTGGCACCTCGGAGACAAAAGGGCCAGG
CAAATGCCATAGAAATCCCTCCAATGCAGCGTGCTGAGAAGCTCCTACTC
CGAAACATTCAGTATCACACGAACATGCTCTTGGCATGACCACGTTCCTT
CCCAGGCACGATTAGGCCGTGGTGTCAAGCATGCCGCTGGAGACGATATT
CCCTCGTGCGAGAGATACCACGGAGCCAGGTGGGATGTTCCGTTTTGTAG
ACTGAATCTCTGTATCCTCAAAATCCTCGCTAATGGAGCTCTCTGTCTGA
TAAGCATCTTCTCCTTCCCCCCGTATGTGCACGAGCAGACCAGGGGCGCC
TTTCGAGGGCCCAGAACGATCGGACACGGGCGCTGCGAGGCAGGAAGGTC
ACGCGGAGGCCTCTGTAGGGAATCAACGCGAACCTTGGGCCCAGCAGCAG
TTCGATGACATGGGATTATGGCGTGAACTCCACGACCCTCCATGCCGGCC
TTCTCTAGTCACCTTCCTTCCCTCCCTCCTCATCACGATACGGTACCATG
GACACTCCTCCGCCCTTGCCGAGATTGTCCCGCAAAATGCAGATTTTCTG
CTGCCAATCCTGGTCCTCCCTGATCAGAAACTCGAGCTCCACCTCCTTGA
AAGCTGCTACGTACGCCACCCGCACATACCCGATTCTGAATATTTCAAGG
GAAAATGCGACGAGAAGGGAGATGAATACCAAATCAGTACGCTCGAAAAG
CCACGCGCCCACTTCCCTTTCCTTTAGGGCCCACCTTTCGAACATGCGCA
GGCTCGCCACGTTGCTGTCGGAGATTTTGCAATAAAAGCGCCGGACCCCC
AGTGCCTCTATGGCGTACTGCATCATCGCTTCCACCCCCTCCATCCCAAG
CCCCCTCCCTCTCCTTGTGGGCTCAGCAATCATAATTTCGATTTCCGCCA
CGCCCATATCACCATCTGGATCATTGAAAAAGAGGTTCACGTCGCCGACC
ATGGTGCAAGGAGCGAAGAGAGGAGGTGAGGCGGCAGGATGGGTCTTGTC
AAGGAGGATGAAGGTACACTCTATGGGGGGATCATGGCGAAAGGTAGGTA
AGAGAAGCGAGATGAGCTCATGGATGTTGAATGAAAGTGCCACGAGTAAG
AGCGATGGCCGTTGCACGGCAACGATAGAGGACGTGAGAAGGAAGACTTG
ACCCTGCGGAAGGTGAGCCCACGCAAAGCGCCGAGACGAAAAAACGGGGA
AAGAGATTGGCACCATTAAAACCCCATATTCACATGTTGAGCAGGCTCTC
ACTTTTCTCATCGTCCCTCCAGGACGCTTGCATCGCGTATTCCTCCTCCA
GCGTCAAAGGCTCCGAGGCCGTGGATTCCTGCAAAAACGGGTCTTTCATC
CATTCGTGATACCGATGCACGTACTTCCTTCGGTACGGGACCAGTACCAG
GTGTTCTGTTATCTGCGGCGATGAATGTGCAAGGAAAGCCTGGAACGTGA
GCCTTCGCAGCACGTCTCATATCTCGAGATCGCGCCAGCAAGAATTTTAT
AATAAACATCTCACGTTTTGTTCCCGAATCCACCATCTGTCAGTTTCCTG
ACATGAATGAAATTTGTTTGTACGTACATCACTTACCAGCGCAGTTTCCC
AGTTCGTTTTCATGGAGTTTCTCTTCACTGTGTAAAAACGAGCTCTCCGT
GTGTCGCTTTTGGCGTCTCGAGTCTCCAGACCACCTCTTCCAAACACCGT
CGACCTTCCTTTAGATATTCATAACCGTCGAAATATTTTTCAACAACGAG
ACGTAGGCGCGCATCGCAACTCTTCCACAGATTGCGTCAATTAAGGGGGA
CAAATAGGGCACGTCGAGTGCGGCGGGTCCGCAGAAGCATGATGGCGTCA
TGCCCATGTCCGCCCTAGACCCATTCCGGAAACGCAGGCATGTCCATTAA
ACCGCCACCACACCCTCATTCTCACGAAAACGCATCTATACACACAGGGA
AGCGATTTGCGCTGGCACGGATTGGCTCGCCCTCTTGATTTTACGCCCAT
TTCCACTCTTCCCGACCTGAGGAGGCAGTCCGCCGGCTTCCTGGTCCTGC
CCCTCTTATTACTTCCACGCAGTTCATAGAGCTTCCGAAGTACGAGCTTT
TGGACGCTGGTGAGCCAGGAAAGATATTTCCCTACACACGTGAGTGATGG
ACCGGAGCCGCGAATTCCAAGGCCTGCTCAAGCTCTTTGGCATCACGGAC
CTACCGCCCGAGGAGGACGAATCCGACCCGTTCGAGCCATTTCCCTCCCC
AACGTCCACGGCCCCCCCCCCCTCCACCTCCGATTTTGGCCTTGCGGCCG
CAAGAATTGCTCAAGGATATTCGGGCACCTGGCGTTTGGTGCAACGTCTA
CAGCGTCTGGTCACGCGGAAAGGCATGCACAACGATCCGACGGCGGAAAT
CGAGGACGTGACGGCCGTTTTCAAGAAGGACCTGGCGGGTCTGCAGGGAG
ACATTGAGAGCCTCCTACGCCACGCCGGGAGGCATTACCGGTGAGCGGGC
GTGGATGGAGGGAGAAAAGACAACGTGGACCGTGGGCATGAAAAGGGGGG
TTGGTGAG

protein sequence of rna6508

>rna6508-protein ID=rna6508-protein|Name=rna6508|organism=Nannochloropsis gaditana|type=polypeptide|length=217bp
MKTNWETALITEHLVLVPYRRKYVHRYHEWMKDPFLQESTASEPLTLEEE
YAMQASWRDDEKKCTFILLDKTHPAASPPLFAPCTMVGDVNLFFNDPDGD
MGVAEIEIMIAEPTRRGRGLGMEGVEAMMQYAIEALGVRRFYCKISDSNV
ASLRMFERIGYVRVAYVAAFKEVELEFLIREDQDWQQKICILRDNLGKGG
GVSMVPYRDEEGGKEGD

mRNA from alignment at CM002468.1:675728..678213+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6508 ID=rna6508|Name=rna6508|organism=Nannochloropsis gaditana|type=mRNA|length=2486bp|location=Sequence derived from alignment at CM002468.1:675728..678213+ (Nannochloropsis gaditana)
GCGTTTTCGTGAGAATGAGGGTGTGGTGGCGGTTTAATGGACATGCCTGC
GTTTCCGGAATGGGTCTAGGGCGGACATGGGCATGACGCCATCATGCTTC
TGCGGACCCGCCGCACTCGACGTGCCCTATTTGTCCCCCTTAATTGACGC
AATCTGTGGAAGAGTTGCGATGCGCGCCTACGTCTCGTTGTTGAAAAATA
TTTCGACGGTTATGAATATCTAAAGGAAGGTCGACGGTGTTTGGAAGAGG
TGGTCTGGAGACTCGAGACGCCAAAAGCGACACACGGAGAGCTCGTTTTT
ACACAGTGAAGAGAAACTCCATGAAAACGAACTGGGAAACTGCGCTGGTA
AGTGATGTACGTACAAACAAATTTCATTCATGTCAGGAAACTGACAGATG
GTGGATTCGGGAACAAAACGTGAGATGTTTATTATAAAATTCTTGCTGGC
GCGATCTCGAGATATGAGACGTGCTGCGAAGGCTCACGTTCCAGGCTTTC
CTTGCACATTCATCGCCGCAGATAACAGAACACCTGGTACTGGTCCCGTA
CCGAAGGAAGTACGTGCATCGGTATCACGAATGGATGAAAGACCCGTTTT
TGCAGGAATCCACGGCCTCGGAGCCTttgacgctggaggaggaatacgCG
ATGCAAGCGTCCTGGAGGGACGATGAGAAAAGTGAGAGCCTGCTCAACAT
GTGAATATGGGGTTTTAATGGTGCCAATCTCTTTCCCCGTTTTTTCGTCT
CGGCGCTTTGCGTGGGCTCACCTTCCGCAGGGTCaagtcttccttctcac
gtCCTCTATCGTTGCCGTGCAACGGCCATCGCTCTTACTCGTGGCACTTT
CATTCAACATCCATGAGCTCATCTCGCTTCTCTTACCTACCTTTCGCCAT
GATCCCCCCATAGAGTGtaccttcatcctccttgaCAAGACCCATCCTGc
cgcctcacctcctctcttcgcTCCTTGCACCATGGTCGGCGACGTGAACC
TCTTTTTCAATGATCCAGATGGTGATATGGGCGTGGCGGAAATCGAAATT
ATGATTGCTGAGCccacaaggagagggagggggcttgggatggagggggt
ggaagcgaTGATGCAGTACGCCATAGAGGCACTGGGGGTCCGGCGCTTTT
ATTGCAAAATCTCCGACAGCAACGTGGCGAGCCTGCGCATGTTCGAAAGG
TGGGCCctaaaggaaagggaagtgggCGCGTGGCTGCAGGCACCAGCATG
TATTGTCTTAAGTTGCTTGAGAGTCGAGCACAACTATCTTCGGCAAGCGC
CTACGTGGGATGGACGCCCTGATCTCATCCTTTTGGCGCACTGAACTTAC
CTTTTCGAGCGTACTGATTTGGTATTCATCTCCCTTCTCGTCGCATTTTC
CCTTGAAATATTCAGAATCGGGTATGTGCGGGTGGCGTACGTAGCAGCtt
tcaaggaggtggagctcgAGTTTCTGATCAGGGAGGACCAGGATTGGCAG
CAGAAAATCTGCATTTTGCGGGACAATCTCGgcaagggcggaggagtgTC
CATGGTACCGTAtcgtgatgaggagggagggaaggaaggtgacTAGAGAA
GGCCGGCATGGAGGGTCGTGGAGTTCACGCCATAATCCCATGTCATCGAA
CTGCTGCTGGGCCCAAGGTTCGCGTTGATTCCCTACAGAGGCCTCCGCGT
GACCTTCCTGCCTCGCAGCGCCCGTGTCCGATCGTTCTGGGCCCTCGAAA
GGCGCCCCTGGTCTGCTCGTGCACAtacggggggaaggagaagatgctTA
TCAGACAGAGAGCTCCATTAGCGAGGATTTTGAGGATACAGAGATTCAGT
CTACAAAACGGAACATCCCACCTGGCTCCGTGGTATCTCTCGCACGAGGG
AATATCGTCTCCAGCGGCATGCTTGACACCACGGCCTAATCGTGCCTGGG
AAGGAACGTGGTCATGCCAAGAGCATGTTCGTGTGATACTGAATGTTTCG
GAGTAGGAGCTTCTCAGCACGCTGCATTGGAGGGATTTCTATGGCATTTG
CCTGGCCCTTTTGTCTCCGAGGTGCCAGGCGGCCTTCATGCACGGTAGAC
AGCTGGTTGTAGATTCCCTGGTGTGTTCGCGATCTGGGAATGCAAGCTTG
TTTTGAAACGTTGGCTCGATGAATAATTGATTTGCCCGAAGGAACGGCAA
GGTCACTGCAGGACTGAATAATAATATCCCAGGACagatgaagaaagaaa
tGTAAATCCCGATGGGTTGAGAGACTGAGGGGGACAAACTGGCGCGGAAT
ATATATGGAGGTAGGAAAATGTACAGGAGATGAGGAAATGAAGCGGCGCC
ACAGCAACAAGCACTTGAAAAGAGTGGGTTCAGATAATAACACATTGtgg
tttttttttcccatgcTCCTTGTTTTGCACAGCAGGAAGAGTGGTTCATA
AGGAAGTACGCTCTCAGAGTGAGCAAGCGCAATAAT

Coding sequence (CDS) from alignment at CM002468.1:675728..678213+

>rna6508 ID=rna6508|Name=rna6508|organism=Nannochloropsis gaditana|type=CDS|length=2616bp|location=Sequence derived from alignment at CM002468.1:675728..678213+ (Nannochloropsis gaditana)
ATGAAAACGAACTGGGAAACTGCGCTGATAACAGAACACCTGGTACTGGT
CCCGTACCGAAGGAAGTACGTGCATCGGTATCACGAATGGATGAAAGACC
CGTTTTTGCAGGAATCCACGGCCTCGGAGCCTttgacgctggaggaggaa
tacgCGATGCAAGCGTCCTGGAGGGACGATGAGAAAAAGTGtaccttcat
cctccttgaCAAGACCCATCCTGccgcctcacctcctctcttcgcTCCTT
GCACCATGGTCGGCGACGTGAACCTCTTTTTCAATGATCCAGATGGTGAT
ATGGGCGTGGCGGAAATCGAAATTATGATTGCTGAGCccacaaggagagg
gagggggcttgggatggagggggtggaagcgaTGATGCAGTACGCCATAG
AGGCACTGGGGGTCCGGCGCTTTTATTGCAAAATCTCCGACAGCAACGTG
GCGAGCCTGCGCATGTTCGAAAGAATCGGGTATGTGCGGGTGGCGTACGT
AGCAGCtttcaaggaggtggagctcgAGTTTCTGATCAGGGAGGACCAGG
ATTGGCAGCAGAAAATCTGCATTTTGCGGGACAATCTCGgcaagggcgga
ggagtgTCCATGGTACCGTAtcgtgatgaggagggagggaaggaaggtga
cTAGATGAAAACGAACTGGGAAACTGCGCTGATAACAGAACACCTGGTAC
TGGTCCCGTACCGAAGGAAGTACGTGCATCGGTATCACGAATGGATGAAA
GACCCGTTTTTGCAGGAATCCACGGCCTCGGAGCCTttgacgctggagga
ggaatacgCGATGCAAGCGTCCTGGAGGGACGATGAGAAAAAGTGtacct
tcatcctccttgaCAAGACCCATCCTGccgcctcacctcctctcttcgcT
CCTTGCACCATGGTCGGCGACGTGAACCTCTTTTTCAATGATCCAGATGG
TGATATGGGCGTGGCGGAAATCGAAATTATGATTGCTGAGCccacaagga
gagggagggggcttgggatggagggggtggaagcgaTGATGCAGTACGCC
ATAGAGGCACTGGGGGTCCGGCGCTTTTATTGCAAAATCTCCGACAGCAA
CGTGGCGAGCCTGCGCATGTTCGAAAGAATCGGGTATGTGCGGGTGGCGT
ACGTAGCAGCtttcaaggaggtggagctcgAGTTTCTGATCAGGGAGGAC
CAGGATTGGCAGCAGAAAATCTGCATTTTGCGGGACAATCTCGgcaaggg
cggaggagtgTCCATGGTACCGTAtcgtgatgaggagggagggaaggaag
gtgacTAGATGAAAACGAACTGGGAAACTGCGCTGATAACAGAACACCTG
GTACTGGTCCCGTACCGAAGGAAGTACGTGCATCGGTATCACGAATGGAT
GAAAGACCCGTTTTTGCAGGAATCCACGGCCTCGGAGCCTttgacgctgg
aggaggaatacgCGATGCAAGCGTCCTGGAGGGACGATGAGAAAAAGTGt
accttcatcctccttgaCAAGACCCATCCTGccgcctcacctcctctctt
cgcTCCTTGCACCATGGTCGGCGACGTGAACCTCTTTTTCAATGATCCAG
ATGGTGATATGGGCGTGGCGGAAATCGAAATTATGATTGCTGAGCccaca
aggagagggagggggcttgggatggagggggtggaagcgaTGATGCAGTA
CGCCATAGAGGCACTGGGGGTCCGGCGCTTTTATTGCAAAATCTCCGACA
GCAACGTGGCGAGCCTGCGCATGTTCGAAAGAATCGGGTATGTGCGGGTG
GCGTACGTAGCAGCtttcaaggaggtggagctcgAGTTTCTGATCAGGGA
GGACCAGGATTGGCAGCAGAAAATCTGCATTTTGCGGGACAATCTCGgca
agggcggaggagtgTCCATGGTACCGTAtcgtgatgaggagggagggaag
gaaggtgacTAGATGAAAACGAACTGGGAAACTGCGCTGATAACAGAACA
CCTGGTACTGGTCCCGTACCGAAGGAAGTACGTGCATCGGTATCACGAAT
GGATGAAAGACCCGTTTTTGCAGGAATCCACGGCCTCGGAGCCTttgacg
ctggaggaggaatacgCGATGCAAGCGTCCTGGAGGGACGATGAGAAAAA
GTGtaccttcatcctccttgaCAAGACCCATCCTGccgcctcacctcctc
tcttcgcTCCTTGCACCATGGTCGGCGACGTGAACCTCTTTTTCAATGAT
CCAGATGGTGATATGGGCGTGGCGGAAATCGAAATTATGATTGCTGAGCc
cacaaggagagggagggggcttgggatggagggggtggaagcgaTGATGC
AGTACGCCATAGAGGCACTGGGGGTCCGGCGCTTTTATTGCAAAATCTCC
GACAGCAACGTGGCGAGCCTGCGCATGTTCGAAAGAATCGGGTATGTGCG
GGTGGCGTACGTAGCAGCtttcaaggaggtggagctcgAGTTTCTGATCA
GGGAGGACCAGGATTGGCAGCAGAAAATCTGCATTTTGCGGGACAATCTC
GgcaagggcggaggagtgTCCATGGTACCGTAtcgtgatgaggagggagg
gaaggaaggtgacTAG

Synonyms

Publications