rna6507, rna6507 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6507
Unique Name	rna6507
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1672
Alignment location	CM002468.1:674976..678527 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100552g3.9953.mrna
Orig protein id	gnl\|cribi\|Naga_100552g3.9953
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002468.1	supercontig	CM002468.1:674976..678527 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100552g3	gene6287	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24182.1	cds6491	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6507	rna6507-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002468.1:674976..678527-
coding sequence from alignment at CM002468.1:674976..678527-

mRNA sequence

>rna6507 ID=rna6507|Name=rna6507|organism=Nannochloropsis gaditana|type=mRNA|length=1672bp
CCTACGCTCCCAGTACACTCGTTCACAGGCTTACGAAGTGAGGGAAACGA
AATCAAAAATTGAGGCTTTAAATTATTCTGCCACACCAGCATCACCCCAA
GGGCGCCTCTCCCTTGCCCCTCTGGGGACCCTCTGAAAGAACCAATTTAG
CTTCTGCTATTGACTTTGGCGTAAAATATACCATACCGACGCGGCTCTTC
AGGCACGCGGACGTTTGACCAGGCCTGGCGGGTGCAATACACTCTTTAGG
CACACGGTTGCCGCCCGTTGCGCAGCGGCAACACAGACGATGTTGCAATT
TTGCTCGGCGCGGCCTGACTCGGCCAGGACAGTTTCCATGGTCCGAGCGA
TGGGGACAAGCACCATACGGTCAAGGCTTGCGACCAGAAGAGGCACCTTT
AACTCACCTCTGGCCGCATCAAGCGGCATGAGGAACACCTCAGACCCTGC
CCGCCGAACCCGATTCTTCAGCAACGAGAGCAGAGTCCTTGGACGCCGAG
GCCTTTACAGTGTCCAAGACAAGAAGGGCAGCATCCTGTCCCCAGGAAGA
ATAAGACGTCGGGCGTGGCAATTACCTGCAGCTCACGTTACCCCGGCCAG
CGCCTCCAGCTCTGCGTGCTTTCTCTTATCCGAAACCCTCCCTCCGTCCA
TCCTCGCCACTCTCTCCCCCTCCTCCTCCTCCTCCTCCTCCTCATCCTCC
TCATCCTCCTCCTCCTCCTGGGCCACGCCTTCCTTCTCCAGCCTGGCGGT
CCTCCTCCTGGGGCTAGGCTGGACGGGGTGCCTGCTGCAAGCTCCCCCCG
GGGAATGCCGGGCCCTCCGGAACATCCACGAGTTCTACAAGATCGTCGAG
AAGCCCATTGGCGCCGGTGGCTTTGGAGTCGTGTGCGTGGGCTCGCACCG
GGAGACGGGGGAGGTGGTGGCGATTAAGCAGCTGCCCAAGAAGGCGATCC
GGGAGCTTAAGGTGATGACGGAGGTGGACATCCTCCGGCTGGCGGGTGAG
CACCGGAACATCATCGGCTTCCGAGACCTCTTCCAGGATGAGGAGAACTG
GTACATCGTGATGGAGATGGCGGAGGGGGGCGAGCTTTTCGACCGGCTGG
TGGAACGGGGCGCCTACTCGGAGGCCCAGGCAAGTGAGATCATGCGGGAG
ATCGTCGACGCGGTCTCCTACCTGCACCAGCAGGGCATCGTCCACTGCGA
CTTGAAGCCCGAGAACCTCTTGCTCGCCACCAAGGCCAGCGACACCAGCA
ACATGCGCCTGGTTGACTTTGGCTCCGCTTTTCGGGCGGATTCGGGGAAA
CTCGTGTCCAAAAAAGGCACAGGGACCATCGCCTACTCCGCGCCCGAGGT
CATCTCGGGGCGCCCCTGCGGCTACAAAGCGGACGTGTGGGCCCTTGGTG
TCTTGATGTACATCCTCCTCTCCGGCTACCACCCTTTTGACCCCTTGAAC
GATGCCAACGACGACCAGATCGGGGCGCGCATCGTCAAGGAGAAAGAGAA
GTACGTCTCGTTCGAGCAGCCCGTCTGGGAACGGATCTCCCCCGAGGCCA
AGATGCTGGTGAAACGCTTGCTCTCCTCGGACGCGCAGACACGACCCACA
GCCCAGGTAGGTTGAGGGCGAGGGGGAGGAAGGGGTTGAGGGCGAGGGGG
AGGAAGGGGTTGAGGGCGAGGG

protein sequence of rna6507

>rna6507-protein ID=rna6507-protein|Name=rna6507|organism=Nannochloropsis gaditana|type=polypeptide|length=184bp
MTEFYQQTGTIIALAHSESVLPYEPLFLLCKTRSMGKKNHNVLLSEPTLF
KCLLLWRRFISSSPVHFPTSIYIPRQFVPLSLSTHRDLHFFLHLSWDIII
QSCSDLAVPSGKSIIHRANVSKQACIPRSRTHQGIYNQLSTVHEGRLAPR
RQKGQANAIEIPPMQRAEKLLLRNIQYHTNMLLA

mRNA from alignment at CM002468.1:674976..678527-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6507 ID=rna6507|Name=rna6507|organism=Nannochloropsis gaditana|type=mRNA|length=3552bp|location=Sequence derived from alignment at CM002468.1:674976..678527- (Nannochloropsis gaditana)
AAAATTCGGTGCCAATCCATACGTCTGCGCTACCCACACGCAATCACGCA
GTCTGTTCCTTTGCAACAGGCTAAGAACAGTGCACCATGTGGTTTTTGAT
CCCATGCGGCTAAATTGAAAAACGTAAATCGTCCTGGGGGGGATCGCGGG
CAGAGATGCCAGTCCGTACGTTCCTTGTTGCTTTGACGGCAAATGTTCTG
CTTTGGCCGACAATTGATAAATTGGAAGCTATTTATGTATAAGAGAGGAG
CTGAGGGTATATTTGGAGCCCTAAGACAGCTAATATGACCGAATTTTATC
AACAAACCGGCACCATTATTGCGCTTGCTCACTCTGAGAGCGTACTTCCT
TATGAACCACTCTTCCTGCTGTGCAAAACAAGGAGCATGGGAAAAAAAAA
CCACAATGTGTTATTATCTGAACCCACTCTTTTCAAGTGCTTGTTGCTGT
GGCGCCGCTTCATTTCCTCATCTCCTGTACATTTTCCTACCTCCATATAT
ATTCCGCGCCAGTTTGTCCCCCTCAGTCTCTCAACCCATCGGGATTTACA
TTTCTTTCTTCATCTGTCCTGGGATATTATTATTCAGTCCTGCAGTGACC
TTGCCGTTCCTTCGGGCAAATCAATTATTCATCGAGCCAACGTTTCAAAA
CAAGCTTGCATTCCCAGATCGCGAACACACCAGGGAATCTACAACCAGCT
GTCTACCGTGCATGAAGGCCGCCTGGCACCTCGGAGACAAAAGGGCCAGG
CAAATGCCATAGAAATCCCTCCAATGCAGCGTGCTGAGAAGCTCCTACTC
CGAAACATTCAGTATCACACGAACATGCTCTTGGCATGACCACGTTCCTT
CCCAGGCACGATTAGGCCGTGGTGTCAAGCATGCCGCTGGAGACGATATT
CCCTCGTGCGAGAGATACCACGGAGCCAGGTGGGATGTTCCGTTTTGTAG
ACTGAATCTCTGTATCCTCAAAATCCTCGCTAATGGAGCTCTCTGTCTGA
TAAGCATCTTCTCCTTCCCCCCGTATGTGCACGAGCAGACCAGGGGCGCC
TTTCGAGGGCCCAGAACGATCGGACACGGGCGCTGCGAGGCAGGAAGGTC
ACGCGGAGGCCTCTGTAGGGAATCAACGCGAACCTTGGGCCCAGCAGCAG
TTCGATGACATGGGATTATGGCGTGAACTCCACGACCCTCCATGCCGGCC
TTCTCTAGTCACCTTCCTTCCCTCCCTCCTCATCACGATACGGTACCATG
GACACTCCTCCGCCCTTGCCGAGATTGTCCCGCAAAATGCAGATTTTCTG
CTGCCAATCCTGGTCCTCCCTGATCAGAAACTCGAGCTCCACCTCCTTGA
AAGCTGCTACGTACGCCACCCGCACATACCCGATTCTGAATATTTCAAGG
GAAAATGCGACGAGAAGGGAGATGAATACCAAATCAGTACGCTCGAAAAG
GTAAGTTCAGTGCGCCAAAAGGATGAGATCAGGGCGTCCATCCCACGTAG
GCGCTTGCCGAAGATAGTTGTGCTCGACTCTCAAGCAACTTAAGACAATA
CATGCTGGTGCCTGCAGCCACGCGCCCACTTCCCTTTCCTTTAGGGCCCA
CCTTTCGAACATGCGCAGGCTCGCCACGTTGCTGTCGGAGATTTTGCAAT
AAAAGCGCCGGACCCCCAGTGCCTCTATGGCGTACTGCATCATCGCTTCC
ACCCCCTCCATCCCAAGCCCCCTCCCTCTCCTTGTGGGCTCAGCAATCAT
AATTTCGATTTCCGCCACGCCCATATCACCATCTGGATCATTGAAAAAGA
GGTTCACGTCGCCGACCATGGTGCAAGGAGCGAAGAGAGGAGGTGAGGCG
GCAGGATGGGTCTTGTCAAGGAGGATGAAGGTACACTCTATGGGGGGATC
ATGGCGAAAGGTAGGTAAGAGAAGCGAGATGAGCTCATGGATGTTGAATG
AAAGTGCCACGAGTAAGAGCGATGGCCGTTGCACGGCAACGATAGAGGAC
GTGAGAAGGAAGACTTGACCCTGCGGAAGGTGAGCCCACGCAAAGCGCCG
AGACGAAAAAACGGGGAAAGAGATTGGCACCATTAAAACCCCATATTCAC
ATGTTGAGCAGGCTCTCACTTTTCTCATCGTCCCTCCAGGACGCTTGCAT
CGCGTATTCCTCCTCCAGCGTCAAAGGCTCCGAGGCCGTGGATTCCTGCA
AAAACGGGTCTTTCATCCATTCGTGATACCGATGCACGTACTTCCTTCGG
TACGGGACCAGTACCAGGTGTTCTGTTATCTGCGGCGATGAATGTGCAAG
GAAAGCCTGGAACGTGAGCCTTCGCAGCACGTCTCATATCTCGAGATCGC
GCCAGCAAGAATTTTATAATAAACATCTCACGTTTTGTTCCCGAATCCAC
CATCTGTCAGTTTCCTGACATGAATGAAATTTGTTTGTACGTACATCACT
TACCAGCGCAGTTTCCCAGTTCGTTTTCATGGAGTTTCTCTTCACTGTGT
AAAAACGAGCTCTCCGTGTGTCGCTTTTGGCGTCTCGAGTCTCCAGACCA
CCTCTTCCAAACACCGTCGACCTTCCTTTAGATATTCATAACCGTCGAAA
TATTTTTCAACAACGAGACGTAGGCGCGCATCGCAACTCTTCCACAGATT
GCGTCAATTAAGGGGGACAAATAGGGCACGTCGAGTGCGGCGGGTCCGCA
GAAGCATGATGGCGTCATGCCCATGTCCGCCCTAGACCCATTCCGGAAAC
GCAGGCATGTCCATTAAACCGCCACCACACCCTCATTCTCACGAAAACGC
ATCTATACACACAGGGAAGCGATTTGCGCTGGCACGGATTGGCTCGCCCT
CTTGATTTTACGCCCATTTCCACTCTTCCCGACCTGAGGAGGCAGTCCGC
CGGCTTCCTGGTCCTGCCCCTCTTATTACTTCCACGCAGTTCATAGAGCT
TCCGAAGTACGAGCTTTTGGACGCTGGTGAGCCAGGAAAGATATTTCCCT
ACACACGTGAGTGATGGACCGGAGCCGCGAATTCCAAGGCCTGCTCAAGC
TCTTTGGCATCACGGACCTACCGCCCGAGGTAAGCATAAGGAGAGGGACG
GAGAAGAAACGTAAAAATAGCAGGAGCGCGCGCCACGTTCTTGAAGACGG
ATGCTAATTCTTTCTATTTCTTTCAACCTCTCCATGCACCCCTCTGTCTT
TCAAAGGAGGACGAATCCGACCCGTTCGAGCCATTTCCCTCCCCAACGTC
CACGGCCCCCCCCCCCTCCACCTCCGATTTTGGCCTTGCGGCCGCAAGAA
TTGCTCAAGGATATTCGGGCACCTGGCGTTTGGTGCAACGTCTACAGCGT
CTGGTCACGCGGAAAGGCATGCACAACGATCCGACGGCGGAAATCGAGGA
CGTGACGGCCGTTTTCAAGAAGGACCTGGCGGGTCTGCAGGGAGACATTG
AGAGCCTCCTACGCCACGCCGGGAGGCATTACCGGTGAGCGGGCGTGGAT
GGAGGGAGAAAAGACAACGTGGACCGTGGGCATGAAAAGGGGGGTTGGTG
AG

Coding sequence (CDS) from alignment at CM002468.1:674976..678527-

>rna6507 ID=rna6507|Name=rna6507|organism=Nannochloropsis gaditana|type=CDS|length=555bp|location=Sequence derived from alignment at CM002468.1:674976..678527- (Nannochloropsis gaditana)
ATGACCGAATTTTATCAACAAACCGGCACCATTATTGCGCTTGCTCACTC
TGAGAGCGTACTTCCTTATGAACCACTCTTCCTGCTGTGCAAAACAAGGA
GCATGGGAAAAAAAAACCACAATGTGTTATTATCTGAACCCACTCTTTTC
AAGTGCTTGTTGCTGTGGCGCCGCTTCATTTCCTCATCTCCTGTACATTT
TCCTACCTCCATATATATTCCGCGCCAGTTTGTCCCCCTCAGTCTCTCAA
CCCATCGGGATTTACATTTCTTTCTTCATCTGTCCTGGGATATTATTATT
CAGTCCTGCAGTGACCTTGCCGTTCCTTCGGGCAAATCAATTATTCATCG
AGCCAACGTTTCAAAACAAGCTTGCATTCCCAGATCGCGAACACACCAGG
GAATCTACAACCAGCTGTCTACCGTGCATGAAGGCCGCCTGGCACCTCGG
AGACAAAAGGGCCAGGCAAATGCCATAGAAATCCCTCCAATGCAGCGTGC
TGAGAAGCTCCTACTCCGAAACATTCAGTATCACACGAACATGCTCTTGG
CATGA

Synonyms

Publications