rna6502, rna6502 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6502
Unique Name	rna6502
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	4073
Alignment location	CM002468.1:659426..660977 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100390g6.3635.mrna
Orig protein id	gnl\|cribi\|Naga_100390g6.3635
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002468.1	supercontig	CM002468.1:659426..660977 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100390g6	gene6282	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6502	rna6502-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24184.1	cds6486	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002468.1:659426..660977+
coding sequence from alignment at CM002468.1:659426..660977+

mRNA sequence

>rna6502 ID=rna6502|Name=rna6502|organism=Nannochloropsis gaditana|type=mRNA|length=4073bp
TTCACAGGTCTTCCAAGGCCCGCTAGAGCACTCTACAAGCGGCACATCCA
CGCGGCTTATATTTCTAGCCTCCCTTAAATAGCTTATCGAGGCATCCTGG
GATGCTGGGGAGACAATATCTGAGGGTGTAGGAGCGGTGGCAGCCTCGTA
CACGAACAGGGCTTCTTGGAATAAGCCGTTGTCGGGCATCAAAATTGAAG
GCAAAAGCACAGACACGCCCGCTTGAATCCTATCGTCCACCATGGGAGCC
AAAAGATCGTCGAGCGTCGTGCGTGAAACTGGAACCGGCATCCGGGGTGA
ATCTGCGCATCGGAAACGCCAGCGGGCGGCGCCCCCCCTGGGGTCGCATG
ATGCCACTGGGCTCGAGCAGGAAAAAAATCTGATTCCAGGGCTAGGCCGC
CCAAGAGAAGGTCATGGCAAAAAAGAGGAGTGCGCGCCGGACCTGTTCGG
CGACGATCTGGAGATTTTCGACATGGACTCCGACTTTGACCACGTGCTGT
ATGAGAACGGAGGGCGGTCGCCGGACCAGAACCGGCAGCCGGCTTCCCGC
CCAGTTGAGGCGGGCGACGCGGGCGACGGCCTCTGGGATATGCCCAGCCT
GGGTGATGGCGGGAACATCGATGCCACGGCTGGCATGGCCCTTCCGGTGC
CAACCCCTCCACCATGCACGGCCCTCCCGAGCCCCGCGACGGCGTCGTCC
TCCTCCCCTACACAGGCTCCCCTTCCCTCGCCTTCACACGCATCCGTCCC
AACCCCGGCACTGCAATCGGTGCAAGCTTCCTCCTCTCCCTTCCCATGCC
CGGCGACCGAAGCCGGTCAATGGGAGGCTCCTCGTGGAGACAGGGAGGGA
GAAAGTCGTTTCCCGCGCGCCCCAGGGCAGGAACAAGGAAGGGCCGTGGG
GGGTGGGACTGGTGGCAGTGAGAGCAGCAGCCACACGTGCGCGAGCGCCA
GCCAGACAGGAGGCAAGCTTCCTGGAGGTTGGGGAGGGATCGGCCGGGCG
AAGAAATCGAGCAACGGTCGGGTCAGCACCAAGGATGTGAAGGCGCAGCT
TCGGGGGGACCCGGGCGTGATCATGGAGCTTTATCAGGACGGGGTGCGCT
TTGGCCTGGGGGGTATGGCCTGGTCCTCCGGGACCAGAGGGATAGCGCCC
GGTCCTGGAAGCTGCTCGGCCCCGGCCCCCCGGGTTCTGGTACGGAGGGC
AGGCGGCGAGGTGATGGGGCCCCTCCAGCCTTACTCCGCCCGCGTCCGGG
ACATGCTCCGATGCCTGGACCAGAGCGCGGTCTTGCCCTTGGAGATCCTC
CGGACGTTGCCCGCGTCGCCACACACGCGTGGGCGAGACCGGGTGGTGAT
GGAGTGCCGCGACCGACGTCCGCGGTGTTTTTACCAGGGCCAGACCGAGA
ACGTTGGGGCCACCCGCACGCCGGGCACAGACGTTCACGTGTCGAGGGCC
TTTATTCATCTCCCGGGCCCCGTCCTCGCCCAAGACCTGGAGCAGGCCCT
CCCCTCCCATGCTGCCCCGTCCCTCGGCGCGCCGGTCCACACGACCCTGT
CCGGGGGCTCCGGGAAGGGGAGGGGGGCGAACCCGGGAGGGGGCAAGAAG
GGGACAGCAGGAGGCCCCGCACCCACCTTCACGGTGGCGGAGATGATGTC
GCACGACCAGATGGTGCAGGACGAGGCGATTCGGTTGGAACAAAGCATGC
TCCAGGCAGCCTTCCCGTCCTTCCCCGACACGGAGGCCCCCCCGGCGTCG
GCTCCTTCCCTCCCCCTCGATCGACCCCCCCCACCCGTCCCTTACCGCCG
CCAGCACTACCGGTTGCTGGCCCCTCCCACCTCCGTGTTGGATACCCGGA
TCGCCCAGCCCCCCTCCGTGTCTAATCGACGCGTGACGGAACCCGTGGCG
GGAATGACGGAGGCCTTGGAGGAGCTGGACATGGACTGGGCGGACCTGCA
CGCCCTCTTCTCGGAGGAAGATCCGCGGCCCCCTTGTCCGCCTCCCCTGG
GTGCCGCGTCCTCCCACTCCTCCTGCGACGCCGACGCCGCCGAGAGGGCC
CTCCATTCCTCCCTGTTGTCCCTGCCTGGGAACGCGTCCTCCCTGACCCT
GGGGGGGAGACCGGAGGGGGGGGAGGTGCTGCACCCAGTGCTGCTAAAGC
GGGAGACATCGGAGCCCATGAGGGGCCTGGCCGTGCTCGGGATGAGTCCA
GGGAACGCGGTGGACGCACTGGCCTCCCCTGGTTCGTTCGAGAACATTCT
CCCGGGTGGGAAGGCCCCAGGTCTACCTACAGCCCACCCGTTCGTCAAGG
CCATCCCCACGGCAAGCCCCTTGTCCCGGCGGGCGGGCGGGGAGGACGCG
AGGCTGGCGGCGACGGCGGGCACGGAACGGCTTTCAAGACCCTCTCCAAG
GGGCGACAGGCGAGCTCCCTCTGCCCGTCCGCCGTCCATCACGTTCGCTG
CCATGTCGAAAGCGCAGGAGCGGTTTCGGCACGTCTCGATCCAAGTCTTG
GCGAACGCTCAAGAAACGGGGCAGCAAGCAGCCACCCGCGCCCAGCAACA
ACAACGGCAGCCGCCTCAGCGCCGAAGCGTGGTGCCGACCCTGGCGAAGA
AGGCTCTGTCTCTGGGATCGGGTATGAGCGTGGAGGAACTCGTGGGGAGG
CAAGGCAGCGGAACTACCAAAGCCGGGGAGGAACGGGGAGAGATTTGTCC
AACGCAGGCAGCAGGCTTTCCCCCACCCCCTCCCTCGCATGTCGCACACA
CCATGCGTCATCGGGCCCACCCGGGCCATCCACACCTGCCGCCCTCCCTC
CGTCCCGCCGTAACTCCCACCCTCCCGCCCGCCCCGACCCCTACGAGGGT
GCCGTCGGCCCGCTCTACGCTTTCTTACCCCTTGGCTTCGCATGCGCCCA
CCGCAATAGGGGTACACGCGGCCGGTGGAGAATTCGCCACGCTCTCTTCT
GTTCCAGGAGGAAACCGAGCGCCGCAAGCACCCCCCGAGCACCAGCAGCA
AACTGGACGGCAGCTCTTGCAGGCACCGCCAGGGGCTCTGTCCGAGCACG
CAGGACTCGCTTATGCCCGCAGTAGTCATGCGCTCCCTTGGAACCCGAAT
TCTATCGCTGCAGGCGGGGGGAGGGCTCTGGAGACGCCGGTCTCTCCCCT
CGAGACGCTCACAGGGCAGATGCGGCCAGGGGGGATGCCGTCGGAGCTAC
CCAAGCCACACAAGCAAGACCTCCAGTACCGCCCCGCGCCACCCGTCAAC
TCGCACCCACAGCGGCAGCAGTATTGCTTGCCACAGCACCAGCAGCCGCC
GTCGCCAGCCCCTTTCCAACGTCAAGATCATGCCCAGCAAGGCCAGCACC
GAGACCCACCGCCTCTCCTACAAGCACCGATCCCGCAATCCAATCGATTG
GCCCCGCTCCAGCAGATTCAGGCGGGGCAAGAGGTGATCCCCACCGAAGC
CACACGTGGTCTATTGCCATATTACAAGGCAGGATCGTCGCGAAGCGCGC
TGCCGCCGCATTCCCAGTCGTCTTGCCAGCAACAGCAGTCTCCACAGCAT
TTGACCGAGCAGTTCTTCACGGGACAGAGGGCAGCGGAAAGAAAGGGAAC
TGTCTCTCCCTATGTGCTGGAGCAACTCAAACTCCAGTGGTTTCGGCAGC
AGCAACAACAACAACCACGACAACCACAGCCAGCACCACGACCGCTACCA
CACCAACAACCCCAACAACAACAACCACGACCACAACAACAACAACAACA
ACAACAACAACAACAACAACATAGACAACAACGACACTTGCACTCTCAAC
AACAACATCGACAACAACAACACTTGCAATCACAAGAGCCACCACCACAC
CAACAACAATATCATCAACCACAACATCAACAACGGCCACCACAACAACC
ACGACATCACCAAACACAACAACAACAACAACAACAACAACAACAACAAC
AACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAA
CAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACA
ACAACAACAACAACAACAACAAC

protein sequence of rna6502

>rna6502-protein ID=rna6502-protein|Name=rna6502|organism=Nannochloropsis gaditana|type=polypeptide|length=130bp
TQHNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNKCNNNNKCNSLHSRHNYIFNITEGAKEPPKHDLVAKAEGMGRQDLN
YPFPVTNQFTSGGTAGREVGSPMVSVCFHP

mRNA from alignment at CM002468.1:659426..660977+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6502 ID=rna6502|Name=rna6502|organism=Nannochloropsis gaditana|type=mRNA|length=1552bp|location=Sequence derived from alignment at CM002468.1:659426..660977+ (Nannochloropsis gaditana)
ACACaacacaacaacaacaacaacaacaacaacaacaacaacaacaacaa
caacaacaacaacaacaacaacaacaacaacaacaacaacaacaacaaca
acaacaacaacaacaacaacaacaacaacaacaacaacaacaacaacaac
aacaacaacaacaaatgcaacaacaacaacaaatGCAACAGCCTCCACAG
CCGCCACAATTACATTTTCAATATCACTGAGGGCGCTAAAGAGCCACCAA
AGCACGACCTTGTGGCCAAGGCAGAGGGAATGGGCCGGCAGGACCTCAAC
TATCCGTTTCCTGTGACCAATCAATTCACCAGCGGGGGGacagcaggaag
agaagtaGGATCTCCGATGGTGTCAGTCTGTTTTCATCCTTGAATTTGTA
TTGTTCGATTTCCCGCATTGTAACATATGTTGTTTAACTTAAAAAATACA
TTGCACAGTGTTACGGGGCACTGCATGCGAAATGCTTCGCCGGACATATT
GTACGATCATATTGATGCGGCAGTGTGTGTGGGCAAGATTTGTGAGTGAA
GATGCAAATCGTGTATAGACGTAATTTTTAGCGAGACTGTAGCTTAAGAC
GCGAAAAGGAAAACTGTGTGAGCATGCTACTGTAAATTATCATCGGACAA
AAGATGTCGCACCTGTAACTGATCTTCTGGTGTGGATTGTGGAGGTAATA
TATGCTTTCGAACAAGTACGGGATGAAAACTGGGCATCTGTGTGCGTATG
CACCTTTGGACTTTGCATAGCTGCCTTTGACGATGACTGTCGGGCAATAT
CCCAAGCATGCTGAAGGTAGTGTAATGTTTCGAGTCCATCACGATATCGC
GTGCAACGTCTCCCGGACAGTCACGTGACGGCCCTGGGAAGCCTTGAAGT
TGGGAAATGTCCAGGCGCAAGCGAATTGCGGCATTATTTACCAAGCGCCT
TATTATCTCGTAAAGCATCTGATCCATGGTACGAAGTCAAGGTGATATCG
GACACTTTGCGAGAGATGTACACGGGCGCGAGGAATTCAGAACGTCGACT
GCTACCGCTATCTTCAGAGGGTGGATAGCAGAAGCGCTCAAGCAGGCAAC
ATTGCAACCGCGCAGACGAAAGAGGGAGTCGTTCCTTTCTGCCACTTTGC
ATGCACGGCGTCGCTTCAGCTTTTaaatgagggaaaggaatggaaaagTC
CAGCAAGTAGCTAGCGTGAGAAAAATAACCGGTATTTATTGCAGCCGAGG
TGCCTTTTTGGTTCCTGTGTAGACTTCCTCTTGAAAAATATATCACTTCT
GCGTCGGTACAAGAAAATATATCACTACTGCGTCGGTGCAAGAAAATATA
TCACTACTGCGTAGGTACAAGAAAATATATCACTACTGCGTAGGTACAAG
AAAATATATCACTACTGCGTCGGTACAAGAAAATATATCACTACTGCGTA
GGTACAAGAAAATATATCACTACTGCGTAGGTATATGAGGCAGTTGTCCA
GCCAAAAAGAAAATATGAAAGCTCACATCTCCTGCATAAGGGTGTGTGAC
TT

Coding sequence (CDS) from alignment at CM002468.1:659426..660977+

>rna6502 ID=rna6502|Name=rna6502|organism=Nannochloropsis gaditana|type=CDS|length=393bp|location=Sequence derived from alignment at CM002468.1:659426..660977+ (Nannochloropsis gaditana)
ACACaacacaacaacaacaacaacaacaacaacaacaacaacaacaacaa
caacaacaacaacaacaacaacaacaacaacaacaacaacaacaacaaca
acaacaacaacaacaacaacaacaacaacaacaacaacaacaacaacaac
aacaacaacaacaaatgcaacaacaacaacaaatGCAACAGCCTCCACAG
CCGCCACAATTACATTTTCAATATCACTGAGGGCGCTAAAGAGCCACCAA
AGCACGACCTTGTGGCCAAGGCAGAGGGAATGGGCCGGCAGGACCTCAAC
TATCCGTTTCCTGTGACCAATCAATTCACCAGCGGGGGGacagcaggaag
agaagtaGGATCTCCGATGGTGTCAGTCTGTTTTCATCCTTGA

Synonyms

Publications