rna6493, rna6493 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6493
Unique Name	rna6493
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2064
Alignment location	CM002468.1:634378..636744 -

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Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100253g8.9425.mrna
Orig protein id	gnl\|cribi\|Naga_100253g8.9425
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002468.1	supercontig	CM002468.1:634378..636744 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100253g8	gene6273	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24194.1	cds6477	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6493	rna6493-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002468.1:634378..636744-
coding sequence from alignment at CM002468.1:634378..636744-

mRNA sequence

>rna6493 ID=rna6493|Name=rna6493|organism=Nannochloropsis gaditana|type=mRNA|length=2064bp
GTCGCGAGGGACGAGGACGGTCGTAACGGCACCCATCCCCTCCGCCCCCG
AGCCCACGCTCTCACTACTTACTCAGTGTCATCCCGTCCTTCTCCCCACA
GCGTGCACGGTTGCCCCTATCTCAGGCAACCTTAGCTGGCAAGGAAGACG
CGCCCGTCTTTGTTGTCGATACGTGCCCCCCTCGCTCCTCGCTTCCATCA
TCGTAGTCCTTCTCGATCCTCCTCGCTCCTCCTTCTGGGTTTCATTCCGC
AGTCTCGACATGTCTCATTTCGTCCGCGCATCCAAATATCGGCATGTATA
TGTTCAGCCCCCGAAAACCGGAGAGGCTTACTCGAACATCCGTCTATCGA
CCGCTGTGGGGGAGCAGAATTACATCAAAGCCAACCCAAAGTACTTTGCA
GTGGCCCTCTCGGGCGGTGGAGGACCATTCACGTGCATCCCCTTCGAAGC
AATTGGTGCTCTCCCCGCCGCCCCGCCAGTTTTCAGCGGCCATACTTCGA
ATGTCCTCGACTTCGATTTCTCTCCCTTTCATGACCATCTGATCGCATCA
GGTGCTGAGGACACTACCGTGAAGGTCTGGGGCATACCTGAAGGAGGGTT
GAAAGAAAGTATCGCCGAGCCCTTGGTCGACTTGCGTGCCCACGAAAGAA
AGGTTACTTTGTTGCGCTTCCATCCCACCGCGGCCAACGTGCTGGCCAGC
GTCAGCGCGGACGGAATGATCAAGCTGTGGGACGTGGAGGGAGGGCAGGA
GGGAGGGCAGTGCCATGTGCACCAGCAACTGGTCCAAGACGTTCAGTGGG
ACTACCGGGGGAACACGTTTGCGACCACATGCAAGGACAAGGTCCTGCGG
GTCCTGGATGGGCGGACGGGGCGGTTGGGGTTGGAGAGGAAGGATGCACA
CGAAGGGTCTAAGAGCAGCAAGTGCGTCTTTCTCGGGGACCGAGAGATGC
TGCTAACAGTCGGCTTCACCAAACAAAGTCGCCGTCAGCTCAAGATATGG
GACCTAAAGAATCTGAAGCAGGAGGTGAAGACCCTGGACATCGACCAGGC
GGCGGGCGCCATCATGCCTTTCTTCGACTCCGACACCAACCTCCTCTACC
TCGCTGGCAAGGGCGACGGCAATATCCGCTACTACGAGATTGTCTCGGAA
GCCCCCTTTGTCTTTCCCATCTCCGAGTATCGCTCCACTACCCCCTCCAA
AGGCTGTTGCTTGGTGCCCAAGCGCGGGTTGAACGTGCTCCGCTGCGAGA
CCGCTCGTGTCCTCAAGCTCACCACTAGCAGCGTGGAACCCCTCTCCTTC
ATCGTCCCCCGCAAGGGCGGCTTTTTCCAGGACGACCTTTTCCCCCCCTC
AATGGCGGGCCTTCCCTCGCATTCGGCACCGGAATGGTGGGCAGGCTCTG
ATAAGGCGCCCTTGCTCATGTCTTTGGACCCCGCGGTCAGGGAGGGCGGG
AAGGAGGGTGGGAAGGATATGGGGTGGAGAGGGGTAGGCTCGCCGTTGGG
GTCATCAGGAGGCAGCCTTGGGAACCGTCCGCCATCGGGGGGAGGGAGGA
CCACGGGACAGCTGCAAAAGGAGCTGGACGTGGCTTTGGCGAGGATCTCG
TTGTTGGAAAGCCGACTGAAAGCTGCAGGACTGGAGTGTTCTTGAGCGAG
GGATGAAGGGGCGTGGAGGGTGTGATATAGATAGGGCGTGCCAGACCACG
CTTTGGCCGCGTGCGCGAAGAAAGGCCGGCAAAAAGGAATGGAAAATTGC
ATAAATGTAACGCGACAGGATTAAAAGACAGCAGTTAAAGTCGAGCATCA
AAGTGAAGATGAGGAAGGAGGGAGGAAGTGCGAGGGTAAGAAGAGTCTAG
TCACTTTAGCCCAAGACACAGGGGATGACCGTTGTATCAATATAATTGGC
ATGCGTTGTTGCATCATACCACTCGAAAAGGTAAGCCGCAGAAAGAAAGG
CGGGCGTCACAACGAATTATAGGCGAAAGCACAGGGTTTTGACGACGGAG
AGTGAGAGATGTCCGAATGTGGAAGTTGATATATACATTAGCGCCGCGCC
ATTGTGTCCGTCGT

protein sequence of rna6493

>rna6493-protein ID=rna6493-protein|Name=rna6493|organism=Nannochloropsis gaditana|type=polypeptide|length=642bp
MSQKAVSSFWALMRRSFLGVALLGLVACSFLSRVQCALAWSRPVSFEVLS
DKLRAPILSPSLRLHYIASDQAPFSFSTRLFSSSTNAVPLAVSSSPTLQG
SGRGIVFPDGRVLSFGFKPRPRISRVALQSTAVFLAIARRMLVPFKKWRW
HITGLPYSHLTSPLISLAFVLLEAYVYLVPLRQLQLQLFYAPSLVPPEML
RFPTSQFRTLSAEDLPSSSPRLPSSPPPSSPILKLHALVHREGPGLGAPS
STSRSRSRGARYLVHCNHGFGANAFSFEPVLAPLARLLGRTHPALAVAHD
APGFGLTEVPKEGGRENGAGGGEGELFTFEHNARLGGRLMEELGREGERD
GGKGMAEEADEGGERRVFLGHSMGALTSAYMAVRHVQQEGGGDGGREAES
GVTAPVTLVMIAPAIMPMRQSPSRLPPAGRFFLGRLFPERVARYIFRKTG
PALRASLLFLTASFLRALCYSDKFWMDGLSLAWGDGGPPPPSTVAHYRLP
SLKAGWEGGLSRFVLAPLFAGRRRKEEPAVGEGRNGEKGDVLKALASGVK
EGRLRVLLVHGERDRVVPLSNTRRLAAALRGQVGEGGGREGGVEVVELEG
VGHVPHEEVPERFVQAVMDYLRKEEEEGQEGGEEEVNGRGKA

mRNA from alignment at CM002468.1:634378..636744-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6493 ID=rna6493|Name=rna6493|organism=Nannochloropsis gaditana|type=mRNA|length=2367bp|location=Sequence derived from alignment at CM002468.1:634378..636744- (Nannochloropsis gaditana)
TCGACAACAAACTTCAACGCTGATCTTGCGCCGCCTCAGTTACACCCCCA
GAGGCTGGCACACCGTGCCGTAGAAAGCAGTCGAGGATCGATAAATACGA
TACACAAGAGGCTCATATTGACATGTCCAGAGTGTATGGTGTCGTGCGAT
GGAAATTATTGTTGGTTTCGGGGGAACCCCCCTTAGTTCGACCTCCCCCG
CGGGTCGTGTTCTTCCTGCCTCCATGTCCACAACGCTCAGCCTTTTCATT
ATGTATTGCACAAGCCAAGACAGCAATATAATGGCAAGATGTCTCAAAAG
GCAGTTTCCTCATTTTGGGCTCTAATGCGGCGCTCTTTCCTCGGCGTAGC
CCTTTTGGGTCTAGTGGCTTGCTCATTTTTGTCAAGGGTGCAGTGCGCGT
TGGCTTGGTCACGACCTGTCTCTTTTGAGGTCCTCTCTGACAAGCTTCGA
GCGCCTATCTTATCACCCAGTTTACGACTTCACTACATTGCTAGTGATCA
GGCGCCCTTCTCATTTTCCACGCGGCTGTTCAGCAGCAGCACCAACGCCG
TGCCCCTGGCAGTGTCCTCCTCCCCGACGCTCCAGGGGTCCGGGAGGGGG
ATCGTCTTTCCCGATGGCCGAGTTCTCTCTTTCGGATTCAAGCCCCGACC
CAGGATCAGCCGCGTCGCTCTCCAAAGCACCGCCGTTTTCCTGGCAATCG
CACGTCGCATGCTCGTACCCTTTAAGAAATGGAGGTGGCATATCACTGGA
CTGCCGTACTCCCACCTCACAAGCCCCCTCATCTCACTCGCATTCGTGCT
CTTGGAGGCCTATGTCTACCTCGTCCCACTACGACAGCTCCAACTGCAAC
TTTTCTACGCCCCCTCCCTGGTCCCTCCGGAGATGCTTCGATTCCCTACC
TCTCAATTTCGAACTCTATCTGCGGAGGACCTTCCGTCTTCCTCCCCCCG
ACTGCCCTCCTCCCCTCCTCCCTCATCCCCCATCCTTAAGCTCCACGCGC
TCGTACACCGGGAAGGGCCCGGCCTCGGTGCTCCCTCTTCGACGTCCCGC
TCCAGGAGCCGAGGGGCCAGGTACCTCGTCCACTGCAACCATGGATTTGG
CGCGAACGCCTTCTCTTTCGAGCCCGTCCTCGCCCCCCTGGCCCGCCTTC
TCGGTCGGACGCATCCAGCCCTGGCCGTTGCGCACGATGCGCCGGGGTTC
GGGCTTACCGAGGTGCCCAAGGAAGGAGGGAGGGAAAACGGGGCGGGAGG
AGGGGAAGGTGAGCTGTTCACTTTCGAGCACAATGCCCGGTTGGGGGGGA
GGCTGATGGAGGAGTTAGGACGAGAGGGTGAGAGGGACGGCGGGAAAGGG
ATGGCGGAGGAAGCGGACGAGGGAGGGGAGCGTCGTGTGTTCCTCGGTCA
CTCGATGGGGGCCTTGACATCGGCCTACATGGCCGTACGCCACGTGCAGC
AGGAGGGAGGCGGGGATGGCGGGAGAGAGGCAGAAAGCGGCGTCACTGCT
CCTGTCACGCTTGTCATGATTGCCCCCGCCATCATGCCTATGCGGCAATC
GCCTTCACGGCTGCCTCCGGCTGGCCGTTTCTTTTTGGGACGCTTATTCC
CCGAACGCGTCGCCCGTTACATTTTTCGAAAAACCGGTCCTGCACTCCGA
GCCTCTCTCCTCTTCTTGACCGCGTCATTTCTCCGGGCATTGTGTTATTC
CGACAAATTCTGGATGGACGGTCTGAGCCTCGCCTGGGGTGACGGCGGCC
CTCCCCCTCCTTCGACGGTAGCGCACTACAGGCTTCCGAGCTTGAAGGCT
GGGTGGGAGGGAGGGTTGAGCAGGTTCGTCCTCGCCCCGCTGTTCGCGGG
TAGAAGGAGGAAAGAGGAACCCGCAGTGGGAGAGGGGAGGAATGGGGAGA
AGGGTGATGTGCTCAAGGCACTGGCGAGCGGGGTGAAGGAAGGAAGGTTG
CGCGTGTTGCTAGTGCATGGTGAGAGGGACCGCGTGGTCCCCCTCTCGAA
TACCCGGAGGTTGGCGGCGGCGTTAAGAGGTCAGGTCGGGGAGGGGGGAG
GGAGAGAGGGAGGGGTGGAGGTGGTGGAATTGGAGGGCGTGGGACATGTG
CCGCATGAGGAGGTTCCGGAGAGGTTTGTGCAGGCAGTCATGGACTACTT
GAGGAAGGAAGAAGAGGAGGGGCAGGAGGGAGGAGAAGAAGAAGTCAATG
GGCGAGGCAAGGCCTGAAAGAAATTGGAGCAATAGCATGGCGGCCAAGAC
GACGGACACAATGGCGCGGCGCTAATGTATATATCAACTTCCACATTCGG
ACATCTCTCACTCTCCGTCGTCAAAACCCTGTGCTTTCGCCTATAATTCG
TTGTGACGCCCGCCTTT

Coding sequence (CDS) from alignment at CM002468.1:634378..636744-

>rna6493 ID=rna6493|Name=rna6493|organism=Nannochloropsis gaditana|type=CDS|length=1929bp|location=Sequence derived from alignment at CM002468.1:634378..636744- (Nannochloropsis gaditana)
ATGTCTCAAAAGGCAGTTTCCTCATTTTGGGCTCTAATGCGGCGCTCTTT
CCTCGGCGTAGCCCTTTTGGGTCTAGTGGCTTGCTCATTTTTGTCAAGGG
TGCAGTGCGCGTTGGCTTGGTCACGACCTGTCTCTTTTGAGGTCCTCTCT
GACAAGCTTCGAGCGCCTATCTTATCACCCAGTTTACGACTTCACTACAT
TGCTAGTGATCAGGCGCCCTTCTCATTTTCCACGCGGCTGTTCAGCAGCA
GCACCAACGCCGTGCCCCTGGCAGTGTCCTCCTCCCCGACGCTCCAGGGG
TCCGGGAGGGGGATCGTCTTTCCCGATGGCCGAGTTCTCTCTTTCGGATT
CAAGCCCCGACCCAGGATCAGCCGCGTCGCTCTCCAAAGCACCGCCGTTT
TCCTGGCAATCGCACGTCGCATGCTCGTACCCTTTAAGAAATGGAGGTGG
CATATCACTGGACTGCCGTACTCCCACCTCACAAGCCCCCTCATCTCACT
CGCATTCGTGCTCTTGGAGGCCTATGTCTACCTCGTCCCACTACGACAGC
TCCAACTGCAACTTTTCTACGCCCCCTCCCTGGTCCCTCCGGAGATGCTT
CGATTCCCTACCTCTCAATTTCGAACTCTATCTGCGGAGGACCTTCCGTC
TTCCTCCCCCCGACTGCCCTCCTCCCCTCCTCCCTCATCCCCCATCCTTA
AGCTCCACGCGCTCGTACACCGGGAAGGGCCCGGCCTCGGTGCTCCCTCT
TCGACGTCCCGCTCCAGGAGCCGAGGGGCCAGGTACCTCGTCCACTGCAA
CCATGGATTTGGCGCGAACGCCTTCTCTTTCGAGCCCGTCCTCGCCCCCC
TGGCCCGCCTTCTCGGTCGGACGCATCCAGCCCTGGCCGTTGCGCACGAT
GCGCCGGGGTTCGGGCTTACCGAGGTGCCCAAGGAAGGAGGGAGGGAAAA
CGGGGCGGGAGGAGGGGAAGGTGAGCTGTTCACTTTCGAGCACAATGCCC
GGTTGGGGGGGAGGCTGATGGAGGAGTTAGGACGAGAGGGTGAGAGGGAC
GGCGGGAAAGGGATGGCGGAGGAAGCGGACGAGGGAGGGGAGCGTCGTGT
GTTCCTCGGTCACTCGATGGGGGCCTTGACATCGGCCTACATGGCCGTAC
GCCACGTGCAGCAGGAGGGAGGCGGGGATGGCGGGAGAGAGGCAGAAAGC
GGCGTCACTGCTCCTGTCACGCTTGTCATGATTGCCCCCGCCATCATGCC
TATGCGGCAATCGCCTTCACGGCTGCCTCCGGCTGGCCGTTTCTTTTTGG
GACGCTTATTCCCCGAACGCGTCGCCCGTTACATTTTTCGAAAAACCGGT
CCTGCACTCCGAGCCTCTCTCCTCTTCTTGACCGCGTCATTTCTCCGGGC
ATTGTGTTATTCCGACAAATTCTGGATGGACGGTCTGAGCCTCGCCTGGG
GTGACGGCGGCCCTCCCCCTCCTTCGACGGTAGCGCACTACAGGCTTCCG
AGCTTGAAGGCTGGGTGGGAGGGAGGGTTGAGCAGGTTCGTCCTCGCCCC
GCTGTTCGCGGGTAGAAGGAGGAAAGAGGAACCCGCAGTGGGAGAGGGGA
GGAATGGGGAGAAGGGTGATGTGCTCAAGGCACTGGCGAGCGGGGTGAAG
GAAGGAAGGTTGCGCGTGTTGCTAGTGCATGGTGAGAGGGACCGCGTGGT
CCCCCTCTCGAATACCCGGAGGTTGGCGGCGGCGTTAAGAGGTCAGGTCG
GGGAGGGGGGAGGGAGAGAGGGAGGGGTGGAGGTGGTGGAATTGGAGGGC
GTGGGACATGTGCCGCATGAGGAGGTTCCGGAGAGGTTTGTGCAGGCAGT
CATGGACTACTTGAGGAAGGAAGAAGAGGAGGGGCAGGAGGGAGGAGAAG
AAGAAGTCAATGGGCGAGGCAAGGCCTGA

Synonyms

Publications