rna6483, rna6483 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6483
Unique Name	rna6483
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3143
Alignment location	CM002468.1:608845..612474 +

Link to JBrowse

Properties


Property Name	Value
Product	Bud13
Orig transcript id	gnl\|cribi\|Naga_100217g5.6981.mrna
Orig protein id	gnl\|cribi\|Naga_100217g5.6981
Gbkey	mRNA
Note	encoded by transcript variant 2; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002468.1	supercontig	CM002468.1:608845..612474 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100217g5	gene6263	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6483	rna6483-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24212.1	cds6467	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002468.1:608845..612474+
coding sequence from alignment at CM002468.1:608845..612474+

mRNA sequence

>rna6483 ID=rna6483|Name=rna6483|organism=Nannochloropsis gaditana|type=mRNA|length=3143bp
CGATGCCACAGGCACACAAGAGGGAAAGAATGCAGCGGAGCACATCATTT
GTGTCCTTCAAAGTTAAGACATGGACTAATGCATGTTGCACAATTTATTA
ATTATGTACATCACCTCATAGTTGTCTCAATCGCGGTGTCATTTCATCCG
ACGCTCGACCAGTGGCAAAAAGGACGGGTGTGCAAAGCTTCGATATACGA
GTAACCCATAAAGTAGGTGATTTGGGATTTACAGGCATGTCAGCACCCGG
TATCAAGTCGAAAGCCGACATTTTAAAACGCTACCTCTCCTCCTCTACCA
GCGACGCTAACGAGGTGATGAAGACGAAGAGAAAACGAAAAAAGAAGGCC
GCTGTCCTGACGGGAGGAGTGCGGGTGGTGGATGCTGACGAATGGGGGGA
GGCGGGGCAGAGGGACGGGAGCAACGACGAAGGTAGGTTGTGTGAAGCAT
CCAGAGGAATTGGGAGTCAGGCCTTCATGGCAAGGAAAACAAAGATGAGT
CGGTGTCATGTGTGGGCTTATGGTACGGTAGTCCATGCAGCCTCTGCGTG
TCCTCACCCTTCTCCTCGCCTACTCACCTTGACTCCCTCCGGTAGGAGAC
GGACCGTTGATTGTGGACGACAAGGGCGACCAGGTCACGGCCGCTGGCAT
GGGTAGAAGGGGTTCTTGTGCGACACAGGCGGGCGCACAGGATCTGTCCC
CACCCCGTCGCCCTCGCTCCGCCGGCCCCCAAGGCGACGTCTCCCCTCCC
CGCAGGACGCGCCCCGAGCGCCTGCCTGGCACCGACGCCTCGTCCCCCCG
GCGACCTCGCCGCCGCAGTCCTTCTGTTTCCCCATTCGATCCTTCCTGTC
GTTCGAACACCACTTCTGGAGAGCCCTCCCGTCCTCACCAACCTCGGCCC
AGCCCTTCCCCTTCCAGAGACCCAGGGCCCGAGGGCGGGGACATTTCCCC
CCCCCGCCGCAGGCGCCGGCATGACAGTCCCTCTCCTCTGCGCCGCAGAC
GCCGGCACGACACTCCCTCCCCTTCCCCCACCAGGGACGGCGACCCTCCC
AAGCGTGGCGGCCAGGGCACTCGGGACGACCGTGGAGCGGTGGCAGTCGC
CGTGGTCTCGGAGTCGGGGAAGACCGCATCGACGAGGCCCAAGGAGGACG
GGCTCAAGACAGGGGCCGAATTTCGGGCCGAGCTGGAGGCGCAGAAGGAT
GCCGAGGCGCACGCCTGGGCGGAGGGCGCCAAAGACGCAGGTGTGACCGG
CCAACACGCCGAGACGGTGGTCCGTGATCGTCGGGGGCGAAAGTTGGAGA
TGCTCAGCGAGTTTTTGAACCAGGAGGCGTACAAGGAGGGGAAGGCGGCC
AAGGAGGCGAAGGAGGAGTACGAGTGGGGGCGAGGGAAGGTGCAGAAGGA
GAAAGATGAGGATCATCGGCGGGAGCTGGAAGACATCAAGAATGCGCCGT
TCGCCCGCTATGAAAGCGACCTTAAACTTGAGCGGGCACGCAAAGAAGAG
ATTCGGGCGGACGATCCCATGGCGGCGTACATGCTTCAGAAGCAACGTGA
CGCCCTTGCGCAAGAGGCGACAAGAAGTGGAAAAGTTCTTAAGCCGGAAT
ATAAAGGGCCGCCGCCCAAGCCGAATCGGTTCAATATCCGTCCTGGGTAT
CGATGGGACGGCATCGATCGTGGGAATGGGTTTGAGGCGAGGTGGTTTAA
GCGGCAGAGCGAGCTCGTGACCAAACACGAGAGGGACCGTGCATGGGGCA
TGTCGGATTTGTAAAAAGGACAGCGACACGAAAACATTAACGTGGACGTC
AGACTGTCATTTTCCGCGCGATACCGTATTTCTTTTCAACTATCTTTTAG
CTGTTTCAGTCACTATGTCCTCGCCCATCAGGTCGCAGCCCCTGCTCTCA
CGTCCTTGTGGACATTTCACGAATTTCGGTGCAACAGATATACTTACATA
CCCATGTTATTCGATCCCATGCCGGCATGGAAACAATTTTGAGAATTTAC
CAACTTCCCGACCCTATCTTGCAATGGTTCAACTGTTGCTGACTGTGGTG
TTTCCTTGCGACGATGACGACGACATGAATCCGCTTCACAATCCTCCAAG
CACCCGTTATATTGTGAGCGGACACAATTTGGCTTTTAATGTTTGATTCT
TGAGCTTGTAAGGTGGTATCATTCCCATTTTACGCGTATTATTCCGTCCA
GTTTCCCGCTCCCAGGGTCGACCTCAGGCTCGTCGCTAGAAAGAAAGAAG
GCGAGCAAAAAACACACTGAAGGACAAAAATGAAGGCTCAACAAAGTGAT
GGGATCATTCTGTGAAGCTCACAATCGACGAGAAGAACGTGCGCTTTTCG
TCAAAGTTTGTTTGTGAGGCATACCTTCGGACAAGAGAAGTGCGTCTGGT
TTGGGCCATGCCTAGCTAGATTTCTTTCTCCCTCGTCCACTGGCCAAATC
AGACCAAGACGACTGGTCACTTTCACAGCTCACGATCTTTAATTATAGCA
ACAGTGCCCTTTCCGTTGGTAGCACTGGTGGATTTGGAATCTCCCCATGA
ACGGGGCAAATTTCATGAAGCGGGATAAGGAATGGCACGAAGCCTTGGAG
GCCATGCACGAAATATCCAAGATTCTCAACACAGGTCTGGATCGTGAGAC
GCTCGCTATCCTGGTCAATTTGTGTGAGGCAGGCGTCAATCCTGAGGCCT
TGGCCCTCGTGGTGCAGGAGCTCCGGGGAGAGGCCGCTCGAAAGAGACAG
CAGCTAGGGCAGGGCAATGGAAGGAGTTGGTCAAGGCCACAAAATCAGTA
ATTCAAGAAAAAGAGCTATGGATGGGATAGAATGGTGCCGAGACAGTGGC
ACTGTTGATGAAACGTGCTTATGCTGTGTACAAAAAGAAAGTGTTACCTT
GAGTCGCCGGATCATAAGAGTTTCTTCATAATTGCCAACAATCGAGATAC
AAAATCAAATGAAATTTGTTAGAGAAGCCATCTCCGGAAATAAGCACGTC
GTTAGCTGCAGGCATTTAAAAATACTGGGTGTGCTTTGTCAGCTTACAAA
CAAGGGAAGGAGCCTCGCCAGATCCGTCTCTCTATGTTTCCATGCTATTC
CCGCTGCTTTTCTTCGTACGGGTGCTTAACAAGCCTGTCGCCC

protein sequence of rna6483

>rna6483-protein ID=rna6483-protein|Name=rna6483|organism=Nannochloropsis gaditana|type=polypeptide|length=371bp
MGRRGSCATQAGAQDLSPPRRPRSAGPQGDVSPPRRTRPERLPGTDASSP
RRPRRRSPSVSPFDPSCRSNTTSGEPSRPHQPRPSPSPSRDPGPEGGDIS
PPRRRRRHDSPSPLRRRRRHDTPSPSPTRDGDPPKRGGQGTRDDRGAVAV
AVVSESGKTASTRPKEDGLKTGAEFRAELEAQKDAEAHAWAEGAKDAGVT
GQHAETVVRDRRGRKLEMLSEFLNQEAYKEGKAAKEAKEEYEWGRGKVQK
EKDEDHRRELEDIKNAPFARYESDLKLERARKEEIRADDPMAAYMLQKQR
DALAQEATRSGKVLKPEYKGPPPKPNRFNIRPGYRWDGIDRGNGFEARWF
KRQSELVTKHERDRAWGMSDL

mRNA from alignment at CM002468.1:608845..612474+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6483 ID=rna6483|Name=rna6483|organism=Nannochloropsis gaditana|type=mRNA|length=3630bp|location=Sequence derived from alignment at CM002468.1:608845..612474+ (Nannochloropsis gaditana)
cgatgcCACAGGCAcacaagagggaaagaatgcaGCGGAGCACATCATTT
GTGTCCTTCAAAGTTAAGACATGGACTAATGCATGTTGCACAATTTATTA
ATTATGTACATCACCTCATAGTTGTCTCAATCGCGGTGTCATTTCATCCG
ACGCTCGACCAGTGGCAAAAAGGACGGGTGTGCAAAGCTTCGATATACGA
GTAACCCATAAAGTAGGTGATTTGGGATTTACAGGCATGTCAGCACCCGG
TATCAAGTCGAAAGCCGACATTTTAAAACGctacctctcctcctctacca
gcgACGCTAACGGTAAGGcgttggaaagggagagggggagagctaAGAGT
TCCGGGACGTGCTCTCAGCACTTCAACGATAAGACGTCAACATCTTCCCA
ACTTGGTTTCACATGCTAACGACACTCTCGACAGAGgtgatgaagacgaa
gagaaaaCGAAAAAAGAAGGCCGCTGTCCTGACGGGAGGAGTGCGGGTGG
TGGATGCTGACGaatggggggaggcggggcagagggacgGGAGCAACGAC
GAAGGTAGGTTGTGTGAAGCATCCAGAGGAATTGGGAGTCAGGCCTTCAT
GGCAAGGAAAACAAAGATGAGTCGGTGTCATGTGTGGGCTTATGGTACGG
TAGTCCATGCAGCCTCTGCGTGTCctcacccttctcctcgcctacTCACC
TTGACTCCCTCCGGTAGGAGACGGACCGTTGATTGTGGACGACAAGGGCG
ACCAGGTCACGGCCGCTGGCATGGGTAGAAGGGGTTCTTGTGCGACACAG
GCGGGCGCACAGGATCTGTCCCCACCCCGTCGCCCTCGCTCCGCCGGCCC
CCAAGGCgacgtctcccctccccgcaggaCGCGCCCCGAGCGCCTGCCTG
GCACCGACGCCTCGTCCCCCCGGCGACCTCGCCGCCGCAGTCCTTCTGTT
TCCCCATTCGATCCTTCCTGTCGTTCGAACACCACTTCTGGAGagccctc
ccgtcctcacCAACCTCGGcccagcccttccccttccagaGACCCAGGgc
ccgagggcggggacatttcccccccccgccgcagGCGCCGGCATGAcagt
ccctctcctctgcgCCGCAGACGCCGGCAcgacactccctccccttcccc
caccagggACGGCGACCCTCCCAAGCGTGGCGGCCAGGGCACTCGGGACG
ACCGTGGAGCGGTGGCAGTCGCCGTGGTCTCGGAGTCGGGGAAGACCGCA
TCGACGAGgcccaaggaggacgggctcaaGACAGGGGCCGAATTTCGGGC
CGAGCTGGAGGCGCAGAAGGATGCCGAGGCGCACGcctgggcggagggcg
cCAAAGACGCAGGTGTGACCGGCCAACACGCCGAGACGGTGGTCCGTGAT
CGTCGGGGGCGAAAGTTGGAGATGCTCAGCGAGTTTTTGAACCAGGAGGC
gtacaaggaggggaaggcggccaaggaggcgaaggaggagtacgagtggg
ggcgagggaaggtgcagaaggagaaagatgaGGATCATCGGCGGGAGCTG
GAAGACATCAAGAATGCGCCGTTCGCCCGCTATGAAAGCGACCTTAAACT
TGAGCGGGCACGCAAAGAAGAGATTCGGGCGGACGATCCCATGGCGGCGT
ACATGCTTCAGAAGCAACGTGACGCCCTTGCGCAAGAGGCGACAAGAAGT
GGAAAAGTTCTTAAGCCGGAATATAAAGGGCCGCCGCCCAAGCCGAATCG
GTTCAATATCCGTCCTGGGTATCGATGGGACGGCATCGATCGTGGGAATG
GGTTTGAGGCGAGGTGGTTTAAGCGGCAGAGCGAGCTCGTGACCAAACAC
GAGAGGGACCGTGCATGGGGCATGTCGGATTTGTAAAAAGGACAGCGACA
CGAAAACATTAACGTGGACGTCAGACTGTCATTTTCCGCGCGATACCGTA
TTTCTTTTCAACTATCTTTTAGCTGTTTCAGTCACTATGTCCTCGCCCAT
CAGGTCGCAGCCCCTGCTCTCACGTCCTTGTGGACATTTCACGAATTTCG
GTGCAACAGATATACTTACATACCCATGTTATTCGATCCCATGCCGGCAT
GGAAACAATTTTGAGAATTTACCAACTTCCCGACCCTATCTTGCAATGGT
TCAACTGTTGCTGACTGTGGTGTTTCCTTgcgacgatgacgacgacATGA
ATCCGCTTCACAATCCTCCAAGCACCCGTTATATTGTGAGCGGACACAAT
TTGGCTTTTAATGTTTGATTCTTGAGCTTGTAAGGTGGTATCATTCCCAT
TTTACGCGTATTATTCCGTCCAGTTTCCCGCTCCCAGGGTCGACCTCAGG
CTCGTCGctagaaagaaagaaggcgagcAAAAAACACACTGAAGGACAAA
AATGAAGGCTCAACAAAGTGATGGGATCATTCTGTGAAGCTCACAATCGA
CGAGAAGAACGTGCGCTTTTCGTCAAAGTTTGTTTGTGAGGCATACCTTC
GGACAAGAGAAGTGCGTCTGGTTTGGGCCATGCCTAGCTagatttctttc
tccctcgtccactgGCCAAATCAGACCAAGACGACTGGTCACTTTCACAG
CTCACGATCTTTAATTATAGCAACAGTGCCCTTTCCGTTGGTAGCACTGG
TGGATTTGGAATCTCCCCATGAACGGGGCAAATTTCATGAAGCGGGATAA
GGAATGGCACGAAGCCTTGGAGGGTACGTTTATGGGGGCACGTGCTTTAA
TCACCTATTTCCATTAAATTGGGGTTGTGAGTCCGAGAagctcctttctt
tcttggcaGAGCCAATATATGCAGTTTAGAAGGCGAGTATAGCTCTTGTC
ATGCGCCGCTTCGTAATGGAAGGCTTAATATTCACATCCCGCTGGCGTGA
CTCCAGCATCCGAACTCAAACGAGTGTCCAACAAGGATAATACTCCAGAG
TTATCTCATACGCCCATTTTCCCGAAAGCCATGCACGAAATATCCAAGAT
TCTCAACACAGGTCTGGATCGTGAGACGCTCGCTATCCTGGTCAATTTGT
GTGAGGCAGGCGTCAATCCTGAGGCCTTGGCCCTCGGTAGGTAAttgaga
agaggagggtttCGAAGATTGCCggattttttctttctcgcaATGAATGC
CTCCAAATAAGTGATTGAGTCCAAGGATCTCTGGTTCCCCGTACAGTGGT
GCAGGAGCTCCGGGGAGAGGCCGCTCGAAAGAGACAGCAGCTAGGGCAGG
GCAATGGAAGGAGTTGGTCAAGGCCACAAAATCAGTAATTCAAGAAAAAG
AGCTATGGATGGGATAGAATGGTGCCGAGACAGTGGCACTGTTGATGAAA
CGTGCTTATGCTGTGTACAAAAAGAAAGTGTTACCTTGAGTCGCCGGATC
ATAAGAGTTTCTTCATAATTGCCAACAATCGAGATACAAAATCAAATGAA
ATTTGTTAGAGAAGCCATCTCCGGAAATAAGCACGTCGTTAGCTGCAGGC
ATTTAAAAATACTGGGTGTGCTTTGTCAGCTTACaaacaagggaaggagc
ctcGCCAGATCCGTCTCTCTATGTTTCCATGCTATTCCCGCTGCTTTTCT
TCGTACGGGTGCTTAACAAGCCTGTCGCCC

Coding sequence (CDS) from alignment at CM002468.1:608845..612474+

>rna6483 ID=rna6483|Name=rna6483|organism=Nannochloropsis gaditana|type=CDS|length=1116bp|location=Sequence derived from alignment at CM002468.1:608845..612474+ (Nannochloropsis gaditana)
ATGGGTAGAAGGGGTTCTTGTGCGACACAGGCGGGCGCACAGGATCTGTC
CCCACCCCGTCGCCCTCGCTCCGCCGGCCCCCAAGGCgacgtctcccctc
cccgcaggaCGCGCCCCGAGCGCCTGCCTGGCACCGACGCCTCGTCCCCC
CGGCGACCTCGCCGCCGCAGTCCTTCTGTTTCCCCATTCGATCCTTCCTG
TCGTTCGAACACCACTTCTGGAGagccctcccgtcctcacCAACCTCGGc
ccagcccttccccttccagaGACCCAGGgcccgagggcggggacatttcc
cccccccgccgcagGCGCCGGCATGAcagtccctctcctctgcgCCGCAG
ACGCCGGCAcgacactccctccccttcccccaccagggACGGCGACCCTC
CCAAGCGTGGCGGCCAGGGCACTCGGGACGACCGTGGAGCGGTGGCAGTC
GCCGTGGTCTCGGAGTCGGGGAAGACCGCATCGACGAGgcccaaggagga
cgggctcaaGACAGGGGCCGAATTTCGGGCCGAGCTGGAGGCGCAGAAGG
ATGCCGAGGCGCACGcctgggcggagggcgcCAAAGACGCAGGTGTGACC
GGCCAACACGCCGAGACGGTGGTCCGTGATCGTCGGGGGCGAAAGTTGGA
GATGCTCAGCGAGTTTTTGAACCAGGAGGCgtacaaggaggggaaggcgg
ccaaggaggcgaaggaggagtacgagtgggggcgagggaaggtgcagaag
gagaaagatgaGGATCATCGGCGGGAGCTGGAAGACATCAAGAATGCGCC
GTTCGCCCGCTATGAAAGCGACCTTAAACTTGAGCGGGCACGCAAAGAAG
AGATTCGGGCGGACGATCCCATGGCGGCGTACATGCTTCAGAAGCAACGT
GACGCCCTTGCGCAAGAGGCGACAAGAAGTGGAAAAGTTCTTAAGCCGGA
ATATAAAGGGCCGCCGCCCAAGCCGAATCGGTTCAATATCCGTCCTGGGT
ATCGATGGGACGGCATCGATCGTGGGAATGGGTTTGAGGCGAGGTGGTTT
AAGCGGCAGAGCGAGCTCGTGACCAAACACGAGAGGGACCGTGCATGGGG
CATGTCGGATTTGTAA

Synonyms

Publications