rna6475, rna6475 (mRNA) Nannochloropsis gaditana

Overview
Namerna6475
Unique Namerna6475
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length291
Alignment locationCM002468.1:591894..593949 -

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Properties
Property NameValue
Productcbs domain-containing protein
Orig transcript idgnl|cribi|Naga_100020g1.5414.mrna
Orig protein idgnl|cribi|Naga_100020g1.5414
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:591894..593949 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100020g1gene6257Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24281.1cds6459Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6475rna6475-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6475 ID=rna6475|Name=rna6475|organism=Nannochloropsis gaditana|type=mRNA|length=291bp
ATGTTTTTCGCCTCTAGTCTTCTGACCAAAAAGGGTCCCCTGGGTAAGGT
CTGGTTGGCCGCCCATTGGGACAAGAAGTTGACCAAAATGCAGGTCTTCC
AGACTGACATCACCAAGTCCGTCGACTCCATCGTGCACCCAACGGTCCCG
CTCGCCCTTCGCGTCTCCGGCCACCTGCTGCTGGGCGTTGTGCGCATCTA
CTCCCGCAAAGTCAAATACCTAATGGAGGATTGCTCCCAAGCGCTGACTA
AGATCAAAATGGCGTTTCGCCCTGAACTTCGGCCAGTTTGA
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protein sequence of rna6475

>rna6475-protein ID=rna6475-protein|Name=rna6475|organism=Nannochloropsis gaditana|type=polypeptide|length=581bp
GLSGVGSIPHIALRGKKDSSFRPVSKLRPRNPLVVDGASSVTEVVKAMVH
KRTDAALVTSRTGKVLGILTDNDVTRRVIAQYRAETETPISTIMTENPKF
VSQDSDSIDALTTMVKGRFRHLPVMGPHGQVVGLLDIAKCLSDAITRLER
REEKTASSLAAASAGVAQGGHGALMHLMQLLQEQSEPGRDCNPSLRALLG
QQGAPTNIVRATVNVRTAAEVMSKCRKAVLVVDEDESLVGIFTPKDMLGR
VVSQELSPDFTAVSSVMTARPDTIEAEATVLEALYMMRENHYLHLPVTDS
RDGSVVGLVDVMEIVHVVCGREDGGRQFWASAQESGRKGRGEGEGWSSAS
ELSSHAAARPSRHPGSIIAGPRSTLRGAGPDPDEQRHIQANPVDPHEDLE
SASVLAGSGQPHTSNLHVLMSSSAEPALEGRASQLNGSTSRGALNAPGGA
QFRLKVVGEDGAVKTVTVPTENFEAAIEAVGKALDMPTGQRAWTYVDDQK
DVITVDTDEGFEEMLAYAHGAHLSVLKVTIIKRRRPKTRRSSGASSGGRS
SGGKTLTVLAMSSIVGLAVVGIAIMAGRKYR
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mRNA from alignment at CM002468.1:591894..593949-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6475 ID=rna6475|Name=rna6475|organism=Nannochloropsis gaditana|type=mRNA|length=2056bp|location=Sequence derived from alignment at CM002468.1:591894..593949- (Nannochloropsis gaditana)
CGGGTTGTCTGGGGTCGGGAGCATCCCTCATATCGCGCTCCGAGGCAAGA
AAGATTCGTCCTTCCGGCCTGTCTCCAAATTACGGCCCCGCAACCCTTTG
GTGGTCGACGGGGCGTCGTCTGTTACGGAGGTGGTGAAGGCGATGGTCCA
CAAACGCACAGACGCGGCGCTAGTGACTTCCCGGACGGGAAAGGTCTTGG
GCATTTTAACAGACAATGACGTGACGCGCCGGGTGATTGCACAATACAGA
GCGGAGACCGAGACCCCCATAAGCACCATCATGACTGAGAACCCCAAGTT
TGTTTCGCAAGACAGTGACAGTATCGATGCGCTGACCACTATGGTGAAGG
GCCGCTTCCGGCACCTGCCTGTGATGGGCCCGCATGGTCAGGTAGTGGGC
TTGTTGGACATCGCCAAGTGTTTAAGCGACGCGATCACCCGACTGGAGAG
GAGAGAAGAGAAAACTGCCTCTTCCCTGGCAGCCGCATCGGCGGGCGTCG
CCCAGGGGGGCCATGGAGCTTTGATGCACCTCATGCAGCTGTTGCAGGAG
CAATCAGAGCCGGGTAGAGACTGTAACCCTTCTCTGCGAGCATTATTAGG
GCAGCAGGGGGCACCGACCAACATTGTCCGGGCCACTGTGAACGTACGCA
CGGCCGCCGAAGTCATGAGTAAGTGTCGGAAGGCGGTGTTGGTGGTGGAT
GAGGATGAAAGCTTGGTTGGGATCTTCACCCCCAAGGACATGCTAGGCAG
GGTGGTGTCCCAGGAACTGAGCCCAGATTTCACGGCGGTCTCGAGTGTTA
TGACGGCCCGGCCAGACACGATCGAGGCAGAGGCCACGGTCTTGGAGGCC
TTGTACATGATGCGCGAGAACCATTATCTGCACCTACCCGTGACGGACAG
CCGGGACGGGTCGGTGGTGGGGCTGGTGGACGTCATGGAGATTGTGCACG
TGGTCTGCGGCCGGGAGGATGGAGGACGTCAGTTCTGGGCCTCCGCGCAG
GAGAGCGGACGGAAGGGACGGGGGGAAGGGGAAGGGTGGTCGTCCGCATC
CGAACTGAGCTCGCACGCTGCGGCAAGGCCGTCGCGCCATCCCGGGAGCA
TCATCGCAGGGCCTCGCTCCACCCTCCGCGGCGCCGGCCCCGACCCTGAC
GAGCAGCGGCACATACAGGCCAATCCTGTGGACCCGCATGAGGACCTGGA
GAGCGCGTCGGTCCTCGCCGGCAGTGGTCAACCCCACACCTCCAACCTTC
ACGTGTTGATGTCATCCTCTGCGGAGCCTGCGCTCGAGGGCCGAGCCTCA
CAGCTAAATGGTTCTACCTCCCGCGGTGCTTTAAACGCACCCGGGGGCGC
TCAATTTCGGCTGAAGGTTGTTGGCGAGGACGGTGCTGTCAAGACGGTGA
CTGTGCCAACGGAAAATTTCGAGGCCGCCATCGAGGCCGTTGGCAAGGCG
TTAGACATGCCGACTGGCCAGCGGGCATGGACCTATGTGGACGACCAGAA
GGATGTGATCACGGTTGATACTGACGAGGGGTTTGAGGAGATGCTAGCAT
ACGCACACGGAGCACACTTATCGGTATTGAAAGTTACGATAATCAAACGC
CGGCGACCGAAAACGCGACGTAGCAGCGGGGCAAGTAGCGGTGGGAGAAG
CAGCGGCGGCAAAACCTTAACGGTCTTGGCGATGAGTAGCATTGTAGGCT
TGGCTGTTGTGGGCATTGCGATCATGGCAGGGCGCAAATATCGATGACTT
GCTCCAACCAGATTTCGATCTGATATGAAGTGACAAAGTACATGGTAGAA
TTTGAAAGCGACTGGTAGGTATTTCATGAATTTTTTTGGGTTCTTCGTGA
CAACTCCAGCACGTGAGAAACTGAGCATGAATAAGACACACATTGCATAT
GGTGGGTGGAAACACTGCATTAAGCCCACAGCCTGTATGAGGTGGTTGGA
GATATCAGAATTGTGGTGAGATATCTGCAGCAGCAACTTCGGTGGAGGAT
GCCTAAAATAAAAATCTAAAAAGAACATAAAGAACTATCAGAGAAGTGAA
GAGGGG
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Coding sequence (CDS) from alignment at CM002468.1:591894..593949-

>rna6475 ID=rna6475|Name=rna6475|organism=Nannochloropsis gaditana|type=CDS|length=1746bp|location=Sequence derived from alignment at CM002468.1:591894..593949- (Nannochloropsis gaditana)
GGGTTGTCTGGGGTCGGGAGCATCCCTCATATCGCGCTCCGAGGCAAGAA
AGATTCGTCCTTCCGGCCTGTCTCCAAATTACGGCCCCGCAACCCTTTGG
TGGTCGACGGGGCGTCGTCTGTTACGGAGGTGGTGAAGGCGATGGTCCAC
AAACGCACAGACGCGGCGCTAGTGACTTCCCGGACGGGAAAGGTCTTGGG
CATTTTAACAGACAATGACGTGACGCGCCGGGTGATTGCACAATACAGAG
CGGAGACCGAGACCCCCATAAGCACCATCATGACTGAGAACCCCAAGTTT
GTTTCGCAAGACAGTGACAGTATCGATGCGCTGACCACTATGGTGAAGGG
CCGCTTCCGGCACCTGCCTGTGATGGGCCCGCATGGTCAGGTAGTGGGCT
TGTTGGACATCGCCAAGTGTTTAAGCGACGCGATCACCCGACTGGAGAGG
AGAGAAGAGAAAACTGCCTCTTCCCTGGCAGCCGCATCGGCGGGCGTCGC
CCAGGGGGGCCATGGAGCTTTGATGCACCTCATGCAGCTGTTGCAGGAGC
AATCAGAGCCGGGTAGAGACTGTAACCCTTCTCTGCGAGCATTATTAGGG
CAGCAGGGGGCACCGACCAACATTGTCCGGGCCACTGTGAACGTACGCAC
GGCCGCCGAAGTCATGAGTAAGTGTCGGAAGGCGGTGTTGGTGGTGGATG
AGGATGAAAGCTTGGTTGGGATCTTCACCCCCAAGGACATGCTAGGCAGG
GTGGTGTCCCAGGAACTGAGCCCAGATTTCACGGCGGTCTCGAGTGTTAT
GACGGCCCGGCCAGACACGATCGAGGCAGAGGCCACGGTCTTGGAGGCCT
TGTACATGATGCGCGAGAACCATTATCTGCACCTACCCGTGACGGACAGC
CGGGACGGGTCGGTGGTGGGGCTGGTGGACGTCATGGAGATTGTGCACGT
GGTCTGCGGCCGGGAGGATGGAGGACGTCAGTTCTGGGCCTCCGCGCAGG
AGAGCGGACGGAAGGGACGGGGGGAAGGGGAAGGGTGGTCGTCCGCATCC
GAACTGAGCTCGCACGCTGCGGCAAGGCCGTCGCGCCATCCCGGGAGCAT
CATCGCAGGGCCTCGCTCCACCCTCCGCGGCGCCGGCCCCGACCCTGACG
AGCAGCGGCACATACAGGCCAATCCTGTGGACCCGCATGAGGACCTGGAG
AGCGCGTCGGTCCTCGCCGGCAGTGGTCAACCCCACACCTCCAACCTTCA
CGTGTTGATGTCATCCTCTGCGGAGCCTGCGCTCGAGGGCCGAGCCTCAC
AGCTAAATGGTTCTACCTCCCGCGGTGCTTTAAACGCACCCGGGGGCGCT
CAATTTCGGCTGAAGGTTGTTGGCGAGGACGGTGCTGTCAAGACGGTGAC
TGTGCCAACGGAAAATTTCGAGGCCGCCATCGAGGCCGTTGGCAAGGCGT
TAGACATGCCGACTGGCCAGCGGGCATGGACCTATGTGGACGACCAGAAG
GATGTGATCACGGTTGATACTGACGAGGGGTTTGAGGAGATGCTAGCATA
CGCACACGGAGCACACTTATCGGTATTGAAAGTTACGATAATCAAACGCC
GGCGACCGAAAACGCGACGTAGCAGCGGGGCAAGTAGCGGTGGGAGAAGC
AGCGGCGGCAAAACCTTAACGGTCTTGGCGATGAGTAGCATTGTAGGCTT
GGCTGTTGTGGGCATTGCGATCATGGCAGGGCGCAAATATCGATGA
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Synonyms
Publications