rna6473, rna6473 (mRNA) Nannochloropsis gaditana

Overview
Namerna6473
Unique Namerna6473
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1314
Alignment locationCM002468.1:586155..588041 +

Link to JBrowse

Properties
Property NameValue
ProductAldo/keto reductase
Orig transcript idgnl|cribi|Naga_100020g3.5356.mrna
Orig protein idgnl|cribi|Naga_100020g3.5356
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:586155..588041 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100020g3gene6255Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6473rna6473-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24223.1cds6457Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6473 ID=rna6473|Name=rna6473|organism=Nannochloropsis gaditana|type=mRNA|length=1314bp
ATGTCCAAACGCAGTTCGGCGGCAGACACATTGAGCCCGTCATTCCTAAC
TAGTGCGGCCTTGGAGCTCGTTTCTCCGACAGACGCATCTCCACAAGGTA
ACGTCAGCGGCTCGCATGCCCCATCGAAAAGGACCAGGAGCACAGTCGCC
ACCGCGGCTGCCACGGCGTCTGCCCCACCCGGCGGTAAAACCCTCCCATT
GATAGAGGTCCCCAAGCATGTGACATTTTCGATCAAAGAAAGTGCGCCGC
AGCTGTTCCTGTCCCGAGACCTGATGGAAGTGACGGGATGTCGTGCGGGC
TACCGTATGGCGAAAGGCAGTGATTGTGTATACTCGGGAAACTGGTATTG
GGAGTGCGAAATCCTTGAGGATGCCAGAACAGTGACAGCGGCAACTGGAG
GTGATAGGCAAAGCGAAGAACGGGCGGAGGAAGACTGTCCTCATTTCCGC
GTGGGATGGGCAACAAAGCAGGGCAACTTACAGGCACCCGTAGGGTACGA
CAAACACAGTTTTGGCTATCGCGACGTGGCGGGCTCAAAAATCCACAAAT
GTGAGCGGGTCGACTATTACGGTGAAGCCTATGGACCAGGAGATGTTGTG
GGGTGCATGATCTGCCTTCCGATTCTACCGGAGCACATGCGGGAGACGGC
TCTGAACGTGGGGGGGAACTCAGTGCAAGCGCCAGGTTTTCCCCCTCCCT
TTTTGCCGCGAGAGGAGGTCGGGGTATCGACTACGAGTGTTGTGGGAGGG
GTCGGTGTCATAGGGGTAGCTGGCGTTGCCGGGAGCGCGAGTTATGGCCG
GCAGGGCGGAAGGAAAGGGAGCGGCCCCGACGAGGACGCTTGTGAGGACC
CGCTTTTGCAGAGGGAGCTGGATGCATTAGGAAACCACATCCGTTTTTTC
AAGAACGGGAAGGATCAAGGGCCGGCTTACACGCAAATACCTGGAGCCCG
GTACTACCCCGCCGTCTCCCTCTACCTTGCCGGTCGCGTACGAGGCAACT
TCGGTCCTTCCCTGATATACCCTCCCCAGACCTCCATCCCCTTCTCGCCC
GTGGCCGCCCTCAAAGGTGGTCTCAAACGTGACGAGCTTGCGCTTCATAA
TCAGGCAGTAAATGAGCGAAGAGCTGCCTTGGCTGCAAGACGACAGCGGC
AGGAAGCGACGGAGCAGCAAGAGGGAGGGCGGCTGGTGGGAGAGCGCCAC
CAGCAAGTGGTGGGAGTGAAGGAAGTGAGAGAGGAGGCGGGGAACACTGA
TGAGAGAGGAGGCGAAGAAAGGGAGGGGGGGCCAGCGGGGAGGGTCGCGG
GGCACAACTCTTAG
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protein sequence of rna6473

>rna6473-protein ID=rna6473-protein|Name=rna6473|organism=Nannochloropsis gaditana|type=polypeptide|length=467bp
MSPRTGIRRIGFGCARITPSLPHLKALTAAIRHGIRVFDTAPNYGHAGAS
ERAVGQALATHFQGTNDLDRDDITICSKFGYYRPVEGHAPGPDSVPVGNK
EEGGLYYSLHPEVMEHELKGSLARLQVDALDILYVHNPEHVLADIVLRHE
TGEKSFSDDVSLQAALREEKQKMRERLVHTFEALEGVVGSGRVRKGYGVS
SNGFALSSKEGLHLSLAMVLDAAAEGARRAGKETASLKAIQLPLNLLEPG
GVMVAAQAREKGLEVFANRPLTAVSQGGLYRLVNKAALSGEPPGGYMEAC
RTALEVFNPTSLFEGRAEKELTEEELETREGCRIIQDLIRDMNRQLTSFT
STETYTQELERRIIPMIASTFESLDEDAADALQAFFVKYGEMVRYHAAMR
AVEACKAAGHVLGGGGGKAGEPLHEYALRWSLDKVPRQLSGVLVGMPSEE
YVHEAVRVASTERGGES
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mRNA from alignment at CM002468.1:586155..588041+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6473 ID=rna6473|Name=rna6473|organism=Nannochloropsis gaditana|type=mRNA|length=1887bp|location=Sequence derived from alignment at CM002468.1:586155..588041+ (Nannochloropsis gaditana)
AAGTTTATAAACAAAATCATGCACACCATGTCAACAAAGGCTAGCGTCTT
CTGCTTCTGAAATAGGCGACGCAAAAATCCTCCGCTCGTCGTTTTTTGGG
GGATGGGCGCATTCGAGCGATGAGGGCAACATTCAGAACAATAACCAGCG
CAACGGCTTCACTTTCTTCACCTCACGCATAGATAGAAAAAGTAGCATTG
GAGTACCGTTGTCGTTGAGCTTCTTCCGCGTTCGGACAACGTGTCTGTGT
ACATTACCAATCCGCACTGAAAAAACTCGGCATGTCGCCCCGGACAGGCA
TCCGCCGCATCGGCTTTGGCTGCGCGCGAATCACTCCAAGTCTGCCTCAT
CTGAAAGCCTTGACCGCCGCCATACGGCATGGAATACGAGTTTTTGACAC
GGCGCCTAATTATGGTCATGCAGGAGCGTCAGAGCGGGCTGTAGGGCAGG
CTTTAGCCACTCATTTCCAAGGCACCAACGACTTGGACAGGGATGACATC
ACAATCTGCTCCAAGTTTGGATACTACAGACCCGTGGAGGGTCATGCCCC
TGGACCGGATAGCGTGCCTGTGGGGAataaagaggaagggggcttGTACT
ACTCGTTGCACCcggaggtgatggagcacGAATTGAAGGGATCTTTAGCC
CGCTTGCAGGTAGACGCCCTGGACATTCTGTACGTGCACAACCCGGAGCA
TGTCCTCGCCGACATCGTACTCCGCCATGAGACGGGGGAGAAGTCATTTT
CCGACGATGTCTCTTTGCAGGCTGCGTTACGTGAAGAAAAGCAGAAAATG
AGAGAGCGCTTGGTGCACACTTTCGAGGCACTAGAAGGCGTGGTTGGGAG
TGGGAGGGTTCGGAAGGGATACGGAGTCAGTAGTAACGGCTTTGCGCTCA
GCTCGAAAGAGGGTTTGCATTTGTCCTTGGCCATGGTATTGGACGCGGCT
GCCGAAGGCGCGAGGCGTGCAGGGAAAGAGACGGCTTCCTTAAAAGCCAT
TCAACTCCCGTTGAACTTGCTAGAGCCCGGAGGCGTGATGGTGGCGGCAC
AGGCgcgggagaaaggattgGAGGTGTTCGCGAACCGACCCTTGACGGCT
GTCTCACAGGGAGGGCTGTATCGACTCGTGAACAAGGCAGCGCTCTCTGG
AGAGCCTCCAGGGGGCTACATGGAGGCATGCCGCACGGCCCTGGAGGTGT
TCAACCCCACGAGTTTGttcgaggggagggcggagaaggagctcacggag
gaggaactaGAGACACGGGAGGGCTGCAGAATTATTCAGGATCTCATTCG
AGACATGAACCGGCAGCTtacctccttcacgtccacTGAGACGTATAcgc
aggagctggagcgaCGGATCATTCCTAtgatcgcctccaccttcgaGAGT
CTGGACGAGGATGCCGCGGACGCTCTGCAGGCGTTCTTTGTCAAGTACGG
GGAGATGGTGCGGTACCATGCGGCCatgcgggcggtggaggcgtgTAAAG
CAGCCGGGCATgtgctggggggggggggaggaaaggcgggcgAGCCCCTC
CACGAATACGCGTTGCGCTGGTCTTTGGATAAGGTGCCGCGACAGCTGAG
TGGAGTCCTGGTCGGCATGCCGTCGGAGGAGTACGTGCACGAGGCCGTGC
GAGTCGCGTcgacggagagagggggggagtcGTGAGGGGGGGTCGGAGAG
GGTGTCTCGCTAGTCCTTTGGCGGAAAGAAAGCTAAGGGATGTATACTTT
TACTAAACAGAATGAAATTGGTTTGTGAAAGATATTCGAACGCTTTCATT
GAGCTTTATTATGGGTGGAAGATCTTGCATCACTTGCTCGGATGCCCTGA
TTTGTGCGCACTGGAACACATTGTCGCTCTTTTTACG
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Coding sequence (CDS) from alignment at CM002468.1:586155..588041+

>rna6473 ID=rna6473|Name=rna6473|organism=Nannochloropsis gaditana|type=CDS|length=1404bp|location=Sequence derived from alignment at CM002468.1:586155..588041+ (Nannochloropsis gaditana)
ATGTCGCCCCGGACAGGCATCCGCCGCATCGGCTTTGGCTGCGCGCGAAT
CACTCCAAGTCTGCCTCATCTGAAAGCCTTGACCGCCGCCATACGGCATG
GAATACGAGTTTTTGACACGGCGCCTAATTATGGTCATGCAGGAGCGTCA
GAGCGGGCTGTAGGGCAGGCTTTAGCCACTCATTTCCAAGGCACCAACGA
CTTGGACAGGGATGACATCACAATCTGCTCCAAGTTTGGATACTACAGAC
CCGTGGAGGGTCATGCCCCTGGACCGGATAGCGTGCCTGTGGGGAataaa
gaggaagggggcttGTACTACTCGTTGCACCcggaggtgatggagcacGA
ATTGAAGGGATCTTTAGCCCGCTTGCAGGTAGACGCCCTGGACATTCTGT
ACGTGCACAACCCGGAGCATGTCCTCGCCGACATCGTACTCCGCCATGAG
ACGGGGGAGAAGTCATTTTCCGACGATGTCTCTTTGCAGGCTGCGTTACG
TGAAGAAAAGCAGAAAATGAGAGAGCGCTTGGTGCACACTTTCGAGGCAC
TAGAAGGCGTGGTTGGGAGTGGGAGGGTTCGGAAGGGATACGGAGTCAGT
AGTAACGGCTTTGCGCTCAGCTCGAAAGAGGGTTTGCATTTGTCCTTGGC
CATGGTATTGGACGCGGCTGCCGAAGGCGCGAGGCGTGCAGGGAAAGAGA
CGGCTTCCTTAAAAGCCATTCAACTCCCGTTGAACTTGCTAGAGCCCGGA
GGCGTGATGGTGGCGGCACAGGCgcgggagaaaggattgGAGGTGTTCGC
GAACCGACCCTTGACGGCTGTCTCACAGGGAGGGCTGTATCGACTCGTGA
ACAAGGCAGCGCTCTCTGGAGAGCCTCCAGGGGGCTACATGGAGGCATGC
CGCACGGCCCTGGAGGTGTTCAACCCCACGAGTTTGttcgaggggagggc
ggagaaggagctcacggaggaggaactaGAGACACGGGAGGGCTGCAGAA
TTATTCAGGATCTCATTCGAGACATGAACCGGCAGCTtacctccttcacg
tccacTGAGACGTATAcgcaggagctggagcgaCGGATCATTCCTAtgat
cgcctccaccttcgaGAGTCTGGACGAGGATGCCGCGGACGCTCTGCAGG
CGTTCTTTGTCAAGTACGGGGAGATGGTGCGGTACCATGCGGCCatgcgg
gcggtggaggcgtgTAAAGCAGCCGGGCATgtgctggggggggggggagg
aaaggcgggcgAGCCCCTCCACGAATACGCGTTGCGCTGGTCTTTGGATA
AGGTGCCGCGACAGCTGAGTGGAGTCCTGGTCGGCATGCCGTCGGAGGAG
TACGTGCACGAGGCCGTGCGAGTCGCGTcgacggagagagggggggagtc
GTGA
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Synonyms
Publications