rna6471, rna6471 (mRNA) Nannochloropsis gaditana

Overview
Namerna6471
Unique Namerna6471
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1377
Alignment locationCM002468.1:582795..584327 +

Link to JBrowse

Properties
Property NameValue
Productgpi mannosyltransferase 1
Orig transcript idgnl|cribi|Naga_100020g5.5363.mrna
Orig protein idgnl|cribi|Naga_100020g5.5363
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:582795..584327 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100020g5gene6253Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6471rna6471-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24230.1cds6455Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6471 ID=rna6471|Name=rna6471|organism=Nannochloropsis gaditana|type=mRNA|length=1377bp
ATGAGTAGCACAGAGAATGTTGAAATCGAGAAAGAATTGCAGACATCGTC
GTCTCCTTTTCTAATCTTTGTGTCTTTCAAAGTTAACAGATTCACTCACA
GCACAAAGCTAAAAAATAATCGAAGTCGGGAAAGTCGGCCAGTAGCCTTT
TTTATCGGGTGTAAATGTTTTTTGGTGGCGATCCATTCGAACATTTTGCA
GGAGCAGGCATGGGAGTTCTACAAAATCCTCGGGGTAAACACGGACGCCA
ATGAGGGAGACATCAAGAAGGCTTACCGTAAGCTCGCGCTGAAGAACCAC
CCGGACAAAGGTGGAGATCCTGAAAAATTCAAAGAGATTACCATGGCCTA
CGAAGTCCTCTCTGATCCGGAGAAGCGCAAGCGGTACGACCAGTACGGGA
AGGACGGTTTGGAGGAGGGAAGCATGCACAACCCGGAAGACATCTTCTCC
ATGTTCTTTGGCGGCGGGCGACGGGGCCCGAGTGGTCCGCGAAAGGGGGA
GGACATCCGGCACCCTCTGAAAGTGACCCTCGATGACCTGTACAATGGGA
AGAAGTGCCACCTGGCCATCAACCGCGACAAACTCTGCGGGGCCTGCGAG
GGCTTAGGGGGCAAGAAAGGGGCGGAACGTTCCTGCAGCACATGCAACGG
GCGGGGGGTGACGGTCCAATTGCGTCAGATAGGTCCGGGCATGGTGCAGC
AATCTCAAATGCCTTGCTCGGTGTGCCGGGGGGCGGGGAAGACGATGAGC
GAGAAGGACAAATGCCGCGAATGTCGGGGACGGAAGGTGGTGAAGGAACG
GAAGCTGTTGGAGGTGCATATCGAGAAAGGGATGAAGCACAACCAGAAGA
TCACCTTCCACGGCGAGGCGGACGAGGCCCCCGGCACCATCCCGGGGGAC
ATCATCTTTTTAGTGCAGGAGAAGGATCACGAGGTGTTCACCCGCAAGAA
CAACGACCTCTTCATGGAAAAGACCCTGACGCTGACCGAGGCCCTTGTCG
GCTACGACTTCCTCTTCACCCATTTGGACGGGCGGGTCATCAAGTGCGGG
AACCAGCCCGGAGAGATCATCAAGCCGGGGGACATCCGGATGGTCCAGGG
CGAGGGGATGCCGATCCACGGGTCTCCTTTCACCAAGGGCCGCTTGTTCA
TCGTCTTCAAGGTGGAGTTCCCACCGTCAGGAGCCTTCGACGCGGCGCAA
CTAAAGGCGCTGGAAGCCGTCCTGCCCTCGCGAGTGGTTCCCAAGGTGAC
TGGAGAGGAGGAAGAAGTGGATCTCGTGCCTGTGGATGCGAACCAGATCG
GGGCGGGGGACGATGGGAGCGCCATGGATGAGGATGAGGACGGTCGGGGC
CAGCGGGTGCAGTGTCAAAACATGTAA
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protein sequence of rna6471

>rna6471-protein ID=rna6471-protein|Name=rna6471|organism=Nannochloropsis gaditana|type=polypeptide|length=468bp
MLSSSQTSSPFSTVSVFVGALLIRLGMLAVGAWIDRASSTVKYTDIDYFV
FSDAARFLSDGGSPYERDTYRYTPFLAYLLLPNLWLHPAWGKVLFVIFDL
LVGFLIMKISSQYKVANNTPLKIQPMNGFSSFFAASPPVLYASFWLYNPL
VINCSTRGSADSLVSALVLATVLLVQQNRPILAAAFHGAAVHFKVYPIIF
SFSYLAALPESDTDGEGQDLTPIGSWRSVWPFSTRKRLLFSVVSALTFLG
LTLAAYALSGHPYLSQGLLYHLTRTDNRHNFSPWFYAIYLDFQDEERRRL
LGLAAFLPQLLLLASTSLTLGPRDLPFCVAVQTMAFVAFNKVCTAQYFAW
YFSVLPAAGPSLASLPSSLPLFLGVAWLLALGAWLACAYLLEFQGRNTFF
ATWISSLVFLCVNVGLLAWLLEAWGRGEGGIMPAALSREDGITRAREGGG
GLRPRRKRERIPVSSERR
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mRNA from alignment at CM002468.1:582795..584327+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6471 ID=rna6471|Name=rna6471|organism=Nannochloropsis gaditana|type=mRNA|length=1533bp|location=Sequence derived from alignment at CM002468.1:582795..584327+ (Nannochloropsis gaditana)
CCAGTCCTACCTCCCACCTTTCTCGATTTCAACATTCTCTGTGCTACTCA
TTAACAGGGATGTTATCCTCCTCACAGACCAGCTCGCCATTTTCAACGGT
GTCTGTGTTTGTAGGGGCCCTGTTGATACGCTTGGGGATGCTGGCAGTAG
GGGCGTGGATCGACAGAGCTTCAAGCACAGTGAAGTACACAGATATCGAT
TATTTCGTCTTCAGTGATGCAGCACGTTTTTTAAGTGATGGTGGATCTCC
ATACGAGCGTGATACTTATCGCTATACACCTTTTTTGGCCTACTTGCTGC
TGCCTAACCTGTGGTTACACCCGGCGTGGGGGAAGGTCTTGTTTGTCATC
TTTGACTTGCTGGTGGGGTTCCTGATAATGAAAATTTCCTCCCAGTATAA
AGTGGCAAACAACACACCGCTGAAGATCCAACCAATGAACGGCTTTTCGT
CGTTTTTTGCTGCGTCTCCTCCAGTATTATATGCGTCATTTTGGCTCTAT
AATCCCCTAGTCATTAATTGCTCAACACGGGGCAGTGCAGACTCCTTAGT
CAGCGCATTGGTTCTTGCGACGGTCTTGCTAGTGCAGCAAAATCGACCTA
TCCTCGCAGCAGCCTTTCATGGGGCAGCAGTCCATTTCAAGGTGTACCCA
ATCatattctccttctcttaCCTGGCAGCACTTCCTGAAAGCGACACGGA
TGGCGAGGGACAGGACCTCACTCCCATTGGCTCCTGGCGCAGCGTCTGGC
CATTCTCGACAAGAAAGCGTCTTCTCTTCTCTGTTGTCAGCGCTTTGACG
TTCCTGGGCCTGACTCTGGCCGCTTACGCCCTGTCAGGTCACCCCTACCT
CTCCCAGGGCCTCCTTTACCACCTGACCAGGACAGACAATCGCCATAACT
TCTCTCCCTGGTTCTACGCCATCTACTTGGACTTTCAAGATGAGGAGCGT
CGGCGGTTGTTGGGTCtggccgccttcctcccccagctccttctcctggc
ctccacctcgctcaCCCTCGGCCCGCGGGACCTGCCTTTCTGTGTGGCCG
TTCAAACCATGGCTTTCGTGGCCTTCAACAAAGTCTGCACCGCCCAGTAT
TTTGCTTGGTacttctccgtcctccccgctgcagggccctccctcgcgtc
cctcccttcctccctcccgctcttcctcggcGTGGCCTGGCTCCTGGCAC
TGGGCGCCTGGCTGGCATGCGCCTACCTACTCGAGTTTCAGGGTCGCAAC
ACTTTTTTTGCGACCTGGATATCGTCCCTTGTCTTTTTGTGCGTTAACGT
GGGGCTGCTTGCCTGGCTCTTAGAGGCGTGGggtcggggagagggaggaa
ttaTGCCCGCGGCGttgtcgagggaggacgggataacccgggcgagggag
ggtggaggaggcttgcgaccaagaaggaagagagagaggattcCGGTTAG
TAGCGAGCGAAGATGATCGTAAAAGTACTTTTCAAACGATCCTGACAACC
ACGGGATGTGAATGCGATGCTGGGGGTACTTTA
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Coding sequence (CDS) from alignment at CM002468.1:582795..584327+

>rna6471 ID=rna6471|Name=rna6471|organism=Nannochloropsis gaditana|type=CDS|length=1407bp|location=Sequence derived from alignment at CM002468.1:582795..584327+ (Nannochloropsis gaditana)
ATGTTATCCTCCTCACAGACCAGCTCGCCATTTTCAACGGTGTCTGTGTT
TGTAGGGGCCCTGTTGATACGCTTGGGGATGCTGGCAGTAGGGGCGTGGA
TCGACAGAGCTTCAAGCACAGTGAAGTACACAGATATCGATTATTTCGTC
TTCAGTGATGCAGCACGTTTTTTAAGTGATGGTGGATCTCCATACGAGCG
TGATACTTATCGCTATACACCTTTTTTGGCCTACTTGCTGCTGCCTAACC
TGTGGTTACACCCGGCGTGGGGGAAGGTCTTGTTTGTCATCTTTGACTTG
CTGGTGGGGTTCCTGATAATGAAAATTTCCTCCCAGTATAAAGTGGCAAA
CAACACACCGCTGAAGATCCAACCAATGAACGGCTTTTCGTCGTTTTTTG
CTGCGTCTCCTCCAGTATTATATGCGTCATTTTGGCTCTATAATCCCCTA
GTCATTAATTGCTCAACACGGGGCAGTGCAGACTCCTTAGTCAGCGCATT
GGTTCTTGCGACGGTCTTGCTAGTGCAGCAAAATCGACCTATCCTCGCAG
CAGCCTTTCATGGGGCAGCAGTCCATTTCAAGGTGTACCCAATCatattc
tccttctcttaCCTGGCAGCACTTCCTGAAAGCGACACGGATGGCGAGGG
ACAGGACCTCACTCCCATTGGCTCCTGGCGCAGCGTCTGGCCATTCTCGA
CAAGAAAGCGTCTTCTCTTCTCTGTTGTCAGCGCTTTGACGTTCCTGGGC
CTGACTCTGGCCGCTTACGCCCTGTCAGGTCACCCCTACCTCTCCCAGGG
CCTCCTTTACCACCTGACCAGGACAGACAATCGCCATAACTTCTCTCCCT
GGTTCTACGCCATCTACTTGGACTTTCAAGATGAGGAGCGTCGGCGGTTG
TTGGGTCtggccgccttcctcccccagctccttctcctggcctccacctc
gctcaCCCTCGGCCCGCGGGACCTGCCTTTCTGTGTGGCCGTTCAAACCA
TGGCTTTCGTGGCCTTCAACAAAGTCTGCACCGCCCAGTATTTTGCTTGG
Tacttctccgtcctccccgctgcagggccctccctcgcgtccctcccttc
ctccctcccgctcttcctcggcGTGGCCTGGCTCCTGGCACTGGGCGCCT
GGCTGGCATGCGCCTACCTACTCGAGTTTCAGGGTCGCAACACTTTTTTT
GCGACCTGGATATCGTCCCTTGTCTTTTTGTGCGTTAACGTGGGGCTGCT
TGCCTGGCTCTTAGAGGCGTGGggtcggggagagggaggaattaTGCCCG
CGGCGttgtcgagggaggacgggataacccgggcgagggagggtggagga
ggcttgcgaccaagaaggaagagagagaggattcCGGTTAGTAGCGAGCG
AAGATGA
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Synonyms
Publications