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Properties
| Property Name | Value |
|---|
| Product | pentafunctional arom polypeptide |
| Orig transcript id | gnl|cribi|Naga_100020g10.5389.mrna |
| Orig protein id | gnl|cribi|Naga_100020g10.5389 |
| Gene | DHQ-SDH |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002468.1 | supercontig | CM002468.1:572344..574748 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna6467 ID=rna6467|Name=rna6467|organism=Nannochloropsis gaditana|type=mRNA|length=1662bp
CATGAATACCTTCCCAAGTGCCTCCTTTTTGATGCGACAGGAGCGTTGAC
GTCACCTGCCCCTTGTACTTTTCCTGAACCTGCTGTACTCTCTTACCTGA
GGCGCAATGATATGGTCACAACCAGGGATAAATATATTTGGTGTGAAGGT
ACATAATACCGGCCTTAACTTTGCTTACCGGCATGATGAGAGTGCCGCAA
CTTGGTCAAGCCCTGCCGCAGCATCCCTCACCTCCCGGCTACACAGCACA
CCACCTCTCTGTGTCTTCCACTCCGTCAGCTTCTACGGCGAGTGGGAGGG
GATGTGTAGAAGTGAACACATCTATATGAGACACAAAAAGCTTTTCAAGC
GTCTACCGTTCCCTGACGCTTCTCTCGTGGCCATCCCAGGACTTGTGGGA
GGGCGAGTGTAATGGAGAGGCTAGGAAGCCGGCGAACGAGGAAAAATTCT
TTCCACAGGCATTCAGGCCTTTCAATCGCACAACTTGTTGCATCACAAGC
AGAATATCGCGCAGTCTTTTATCCATTGATGGTGTTTTAACGGTGTTGAC
TTATATTCTTCGAATACCGCAGGTAGCAACGGGTGTTTGCACCGTCGGAG
CACTACGCTTCGGAAGATACTGAGGTAGTCCGGGAAGTAATCAGTGACCT
CCCCGTACACAAGTCCAGGGAAAAGTGAGAGATGGAGGCATTACTGGGCA
GAGTTGCAAAGTTAGGTGCCGGCGTGGCAGGGGCCGCATTCGTAGGAAAC
AACTTTTTGTTCAACGTGGAAGGCGGGCACCGCGCTGTAGTGTTCGACCG
CTTCAAGGGCGTGCTTCCGAAGCCTCTGGCCGAAGGAACAAGCATCGTCA
TCCCCGTACTGCAATCGGCTTTCTTGTTTGACGTGCGCTCCAAGCCTCGG
GTCATAAATTCCGTGACGGGCACTAAGGATCTGCAGCACGTAAACATCTC
CCTGCGGGTCCTCTCCCGGCCTGTGGAACAGATGCTTCCCGAGATCTTTT
CAAAGATCGGTCAAGACTTCGATGAGCGAGTTTTGCCCGGTGTGGGGAAT
GAGGTTTTGAAGGCGGTGGTGGCCCAGTACAACGCGGAGGAGCTGCTGAG
CAAGCGCGAGCAAATCTCGGATCAGATCAGAGTCAACCTAATCAAGCGCG
CCAGGGAGTTCCACCTCATCCTAGATGACGTCTCCATCACCCACTTGACC
TTCAGCAAGGAGTTCACCAAGGCCATCGAGCAGAAGCAGGTGGCGGAGCA
GGACGCAGAGAGGCAAATGTACATAGTGCAGCGGGCAGATCAGGAACGTA
AGGCTGTGGTCATCCGTGCAGAGGGCGAGGCGGAGGCGGCGATGAAGATC
TCCAAAGCCGTGGCAGACTTCGGGACTGCCTTGATCGAGATTCGTCGCAT
CGACGCGGCCCGGGACATTGCGGACATCTTGAGCAAGAGTCGCAACATCA
CTTACCTGCCGGGGGGGCAGAATTCGGGCTTGCTGCTGGGCTTGACGGCC
GGACAGGGCTAGACTAACGGTTTTGAGACAAGGAGAATAGGATGGAGGGG
ATCGGCGGCTTGTGAAGAAAGGAATCTTTGCATGTGCTCAGGACGGAGAG
AAGCGGGGGGTTGAGGCAGACACCATCGTACTAAAAGCAAGCAGAACGCC
CCGAGATAAGCG back to topprotein sequence of rna6467 >rna6467-protein ID=rna6467-protein|Name=rna6467|organism=Nannochloropsis gaditana|type=polypeptide|length=763bp
MASPLPARRRRWYVPTIHVLLLSGWAAISEAFAVQGCNAPAIRALTSSSS
KPAASSGVASVYRNDCCKAPSTCKPLQTVGPLMMMPDSSNIGRDIHESSR
SCQNIYIVGKPSCRKAVAEALSTAMGLPVIQASSAATLLPSSSAIVDVDD
SVITENEGATILSALGLVIRLVEMDDFSGVGKERDRQKERQAVSRFDVAV
GAEDDIAHTYVVKHIQNLRRLSGGYGDHAVDPSLDLDLGANTFFLSLTFP
DVRECLPLLPGLERGVDALELRVDLLRDKTPWDILRQVAILKSATRLPVI
FTVRSQDQCGAFPNEPAAIFDLLALGLRAGVEVLDVEACWDRKARESLLT
EAWRGYRGTTRLLGSYHVVGRRVPDREALEIFQECYHDGRVDAVKVVLTA
HSVRDTYRVHELAAAAGLPPSLPVVALCLGEVGKLSRVLNSRYTPVTSKL
LPYVAAPGQLTAEEIMRLRQDLGMVPTSSFCLLGSPIAQSPSPAMHTAAF
QHCLLPHTYSFLETEDVLDLKARAKEGRFGGASVTIPHKQAVIPLLDRVE
PSAEAIGAVNTVVVEEDPTTGSVRWVGHNTDWKGIVQPVTRRLREAGRGL
RDDKGRPRVALVVGGGGTALAAAYGMTSLGMRLLVFNRTPSKAHDVVRRF
GGKVLESLSPEAVLAATEGQQDHLDVVVSTVPASAEFVLPDAMLLARPVV
MDAAYRPAETSLLAQARAAGCPYVQGAEMLIAQGVEQFQLWTRRRAPEEV
MRAAVYATVEELK back to topmRNA from alignment at CM002468.1:572344..574748- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >rna6467 ID=rna6467|Name=rna6467|organism=Nannochloropsis gaditana|type=mRNA|length=2405bp|location=Sequence derived from alignment at CM002468.1:572344..574748- (Nannochloropsis gaditana)
TGTGGCGTCCAGTCCCATCTAAACATGGCATCACCTCTGCCTGCTCGTCG
ACGGCGGTGGTACGTCCCGACCATACATGTCCTTTTGCTGAGCGGTTGGG
CCGCCATTTCGGAGGCGTTTGCCGTCCAGGGATGCAACGCTCCAGCAATA
AGAGCGTTGACATCATCCTCATCGAAGCCCGCGGCATCCAGTGGAGTGGC
GTCTGTGTACCGCAATGACTGTTGCAAAGCCCCGTCTACCTGTAAACCTC
TGCAGACCGTCGGCCCCCTCATGATGATGCCTGATAGCAGCAATATTGGA
AGAGACATACATGAAAGCAGTCGTAGCTGCCAGAACATCTATATTGTGGG
TAAACCCAGCTGTAGGAAAGCAGTGGCAGAGGCCTTGAGCACTGCAATGG
GGTTGCCTGTTATTCAAGCTTCGAGTGCTGCCACACTCCTTCCATCCTCC
TCCGCCATCGTCGACGTTGACGATTCTGTCATTACTGAGAACGAGGGCGC
CACCATACTGAGTGCATTGGGTCTTGTCATCAGATTGGTGGAAATGGATG
ACTTTTCAGGAGTTGGAAAAGAGCGAGACCGGCAGAAAGAGCGTCAAGCA
GTGAGCCGATTTGATGTGGCGGTAGGCGCCGAGGACGACATTGCGCACAC
CTACGTCGTGAAGCATATTCAGAACTTGAGACGCCTCTCGGGAGGATACG
GTGACCATGCGGTGGATCCTTCGCTGGACCTGGATTTAGGGGCCAACACG
TTCTTCCTGTCTCTCACCTTCCCCGACGTGCGGGAGTGCCTCCCCCTCCT
GCCCGGGCTGGAAAGAGGCGTGGACGCCTTGGAGCTTCGCGTGGACCTTC
TCCGCGACAAGACGCCCTGGGACATCCTCCGTCAGGTCGCCATTCTAAAA
TCTGCCACGAGGCTCCCCGTCATTTTTACAGTGAGATCTCAGGACCAATG
TGGCGCCTTCCCAAACGAGCCGGCGGCTATCTTCGACCTCCTGGCCCTCG
GGCTGCGGGCAGGCGTAGAGGTGCTTGACGTGGAAGCGTGCTGGGACCGG
AAGGCTCGTGAGTCTCTTTTAACTGAGGCTTGGCGGGGCTATCGGGGCAC
CACGCGCCTGTTGGGATCCTACCACGTAGTGGGCCGCCGCGTCCCCGACC
GAGAAGCCCTGGAGATTTTCCAAGAGTGCTACCACGATGGGAGGGTCGAC
GCCGTCAAGGTGGTGCTGACAGCTCACAGCGTCCGCGATACCTACCGCGT
GCACGAATTGGCAGCGGCCGCCGGCCTCCCTCCTTCCCTCCCCGTGGTGG
CGCTGTGCCTGGGCGAGGTCGGGAAACTGAGCCGAGTCTTGAACAGCCGG
TATACGCCCGTCACCAGCAAACTTCTGCCCTACGTGGCCGCCCCCGGCCA
ATTGACCGCGGAAGAAATCATGAGGCTGCGTCAGGACCTGGGCATGGTCC
CTACGTCCTCCTTCTGTCTGCTCGGAAGCCCGATCGCCCAGTCCCCCTCC
CCGGCTATGCATACGGCCGCTTTTCAACACTGCCTGTTGCCGCACACCTA
CAGCTTCCTTGAGACCGAGGACGTGCTTGATCTCAAGGCGCGCGCGAAGG
AAGGGCGTTTTGGGGGCGCCTCCGTGACCATCCCGCACAAGCAAGCCGTC
ATCCCGCTCTTGGACCGGGTGGAGCCCTCCGCTGAGGCGATCGGGGCGGT
GAACACGGTGGTGGTGGAGGAGGACCCGACGACGGGGTCCGTGCGCTGGG
TCGGCCACAACACGGACTGGAAAGGCATCGTCCAGCCCGTGACCCGCCGG
CTCCGGGAGGCGGGGCGCGGGTTAAGGGACGACAAGGGCAGGCCTCGAGT
TGCCCTAGTGGTGGGCGGGGGGGGGACGGCACTCGCCGCGGCCTATGGCA
TGACCTCCCTCGGTATGCGCCTTCTCGTCTTTAACCGCACCCCCAGCAAA
GCCCACGACGTAGTGCGTCGCTTCGGGGGTAAGGTCTTGGAGTCTCTGTC
GCCGGAAGCCGTCCTGGCCGCCACGGAGGGCCAGCAAGATCACTTGGACG
TGGTGGTATCCACGGTGCCTGCCAGTGCCGAGTTCGTCTTGCCCGACGCC
ATGCTCCTGGCGCGACCTGTGGTGATGGACGCTGCCTACCGGCCGGCCGA
AACAAGCTTGCTCGCTCAGGCTCGAGCCGCCGGGTGCCCCTACGTGCAAG
GCGCGGAGATGCTCATCGCCCAGGGGGTGGAGCAATTCCAGCTCTGGACG
CGCCGGAGAGCACCCGAGGAAGTGATGCGGGCGGCGGTGTACGCGACGGT
GGAGGAGCTCAAGTAGCTCAACACGAAGGAGTGAGAGGTAGAAGGCGGAT
GACGGCGGAAAGTGTAAAAGTAAAGCATCTAAATCAAACTCAAACCGATT
CGAGC back to topCoding sequence (CDS) from alignment at CM002468.1:572344..574748- >rna6467 ID=rna6467|Name=rna6467|organism=Nannochloropsis gaditana|type=CDS|length=2292bp|location=Sequence derived from alignment at CM002468.1:572344..574748- (Nannochloropsis gaditana)
ATGGCATCACCTCTGCCTGCTCGTCGACGGCGGTGGTACGTCCCGACCAT
ACATGTCCTTTTGCTGAGCGGTTGGGCCGCCATTTCGGAGGCGTTTGCCG
TCCAGGGATGCAACGCTCCAGCAATAAGAGCGTTGACATCATCCTCATCG
AAGCCCGCGGCATCCAGTGGAGTGGCGTCTGTGTACCGCAATGACTGTTG
CAAAGCCCCGTCTACCTGTAAACCTCTGCAGACCGTCGGCCCCCTCATGA
TGATGCCTGATAGCAGCAATATTGGAAGAGACATACATGAAAGCAGTCGT
AGCTGCCAGAACATCTATATTGTGGGTAAACCCAGCTGTAGGAAAGCAGT
GGCAGAGGCCTTGAGCACTGCAATGGGGTTGCCTGTTATTCAAGCTTCGA
GTGCTGCCACACTCCTTCCATCCTCCTCCGCCATCGTCGACGTTGACGAT
TCTGTCATTACTGAGAACGAGGGCGCCACCATACTGAGTGCATTGGGTCT
TGTCATCAGATTGGTGGAAATGGATGACTTTTCAGGAGTTGGAAAAGAGC
GAGACCGGCAGAAAGAGCGTCAAGCAGTGAGCCGATTTGATGTGGCGGTA
GGCGCCGAGGACGACATTGCGCACACCTACGTCGTGAAGCATATTCAGAA
CTTGAGACGCCTCTCGGGAGGATACGGTGACCATGCGGTGGATCCTTCGC
TGGACCTGGATTTAGGGGCCAACACGTTCTTCCTGTCTCTCACCTTCCCC
GACGTGCGGGAGTGCCTCCCCCTCCTGCCCGGGCTGGAAAGAGGCGTGGA
CGCCTTGGAGCTTCGCGTGGACCTTCTCCGCGACAAGACGCCCTGGGACA
TCCTCCGTCAGGTCGCCATTCTAAAATCTGCCACGAGGCTCCCCGTCATT
TTTACAGTGAGATCTCAGGACCAATGTGGCGCCTTCCCAAACGAGCCGGC
GGCTATCTTCGACCTCCTGGCCCTCGGGCTGCGGGCAGGCGTAGAGGTGC
TTGACGTGGAAGCGTGCTGGGACCGGAAGGCTCGTGAGTCTCTTTTAACT
GAGGCTTGGCGGGGCTATCGGGGCACCACGCGCCTGTTGGGATCCTACCA
CGTAGTGGGCCGCCGCGTCCCCGACCGAGAAGCCCTGGAGATTTTCCAAG
AGTGCTACCACGATGGGAGGGTCGACGCCGTCAAGGTGGTGCTGACAGCT
CACAGCGTCCGCGATACCTACCGCGTGCACGAATTGGCAGCGGCCGCCGG
CCTCCCTCCTTCCCTCCCCGTGGTGGCGCTGTGCCTGGGCGAGGTCGGGA
AACTGAGCCGAGTCTTGAACAGCCGGTATACGCCCGTCACCAGCAAACTT
CTGCCCTACGTGGCCGCCCCCGGCCAATTGACCGCGGAAGAAATCATGAG
GCTGCGTCAGGACCTGGGCATGGTCCCTACGTCCTCCTTCTGTCTGCTCG
GAAGCCCGATCGCCCAGTCCCCCTCCCCGGCTATGCATACGGCCGCTTTT
CAACACTGCCTGTTGCCGCACACCTACAGCTTCCTTGAGACCGAGGACGT
GCTTGATCTCAAGGCGCGCGCGAAGGAAGGGCGTTTTGGGGGCGCCTCCG
TGACCATCCCGCACAAGCAAGCCGTCATCCCGCTCTTGGACCGGGTGGAG
CCCTCCGCTGAGGCGATCGGGGCGGTGAACACGGTGGTGGTGGAGGAGGA
CCCGACGACGGGGTCCGTGCGCTGGGTCGGCCACAACACGGACTGGAAAG
GCATCGTCCAGCCCGTGACCCGCCGGCTCCGGGAGGCGGGGCGCGGGTTA
AGGGACGACAAGGGCAGGCCTCGAGTTGCCCTAGTGGTGGGCGGGGGGGG
GACGGCACTCGCCGCGGCCTATGGCATGACCTCCCTCGGTATGCGCCTTC
TCGTCTTTAACCGCACCCCCAGCAAAGCCCACGACGTAGTGCGTCGCTTC
GGGGGTAAGGTCTTGGAGTCTCTGTCGCCGGAAGCCGTCCTGGCCGCCAC
GGAGGGCCAGCAAGATCACTTGGACGTGGTGGTATCCACGGTGCCTGCCA
GTGCCGAGTTCGTCTTGCCCGACGCCATGCTCCTGGCGCGACCTGTGGTG
ATGGACGCTGCCTACCGGCCGGCCGAAACAAGCTTGCTCGCTCAGGCTCG
AGCCGCCGGGTGCCCCTACGTGCAAGGCGCGGAGATGCTCATCGCCCAGG
GGGTGGAGCAATTCCAGCTCTGGACGCGCCGGAGAGCACCCGAGGAAGTG
ATGCGGGCGGCGGTGTACGCGACGGTGGAGGAGCTCAAGTAG back to top
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