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Properties
| Property Name | Value |
|---|
| Product | platelet-activating factor acetylhydrolase ib subunit alpha |
| Orig transcript id | gnl|cribi|Naga_100020g13.5377.mrna |
| Orig protein id | gnl|cribi|Naga_100020g13.5377 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002468.1 | supercontig | CM002468.1:566981..568632 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna6464 ID=rna6464|Name=rna6464|organism=Nannochloropsis gaditana|type=mRNA|length=1183bp
TGAGCAGCGCTTTAGTTGAAGACACTGGAGGTCCTAAATGATAGTGGATA
GACTTATTGAGAGACACTGGGCGGTCAGAGCTAGCAATAAGTGGCTGGGA
AGAGGGCATGCCGGCAAGGTTGTTGAGAAGGACGAAGAAGAGTGAAAGCG
AAGGGCACTCACATTCTATCCATAAACATTCCTCAGCCCCAATGACCCAC
ACGCCCCCTATCACGCCATATGCTAGTGATAAGTGGTGGTGCGGGCCAGC
CCTCGATTTTATATGGGGTCATAAGGTCCAAGGGGGCTGAATTGCACCCC
GACCTCACGCCAGACGGTCATCTCTACCTAGCTCTCAAACACCTGACCGT
CTTTTCTCTTTGATTGACAATCATACAGGAAATAATGGTCCGGTACAGCC
GCGAGATTGATGACCCGAACAAGGCCGCTAAGGCGCGCGGCTCTCACCTC
CGTGTGCACTTCAAGCATGTCCGTGAAGTATCGCACACAATCACGGGGTG
GCAAGTGGGCAAAGCCAAGCAGTTTCTTGAGGATGTGCTTCAGTACAAGC
GGGCCGTGCCGTTCACCCGGTTTAAGGGTGGCATCGGCCGACATGCTCAG
GGCAAACTCTTGAGTGTGCCAGGCTCTCAGTGCGCGTGGCCTCAGAAGGC
CACTAAGATCGTCTTGGATATGCTCACGAACGCAGAGTCCAACGCGGAAG
TGAAGGGAATGGACACGGACAACCTTTATATCGTCCACGCACAAACCAAC
CGGGCACCCAAGCAACGCCGACGGACTTATCGGGCCCACGGTCGCATCAA
TCCGTACATGTCAAGCCCGGCTCATCTGGAAATTATCCTGACTGAGAAGC
CTGTGCCCGTGAAAAAGGAGCCAGGTGCTCCCAAGCTTACCCGCAAGCAG
GCAGCCAGGGTTCGTGTAGGAGGAGGCAACTGAAGAGGATGTCACGACAG
AGAGGAATGGGATGGAGATGAGGACCATTTATCCGTTGTCTGATGTCTTG
TGGGATTGGCTTAATTCTGAGTGAAGTCAGTGCGCTGCCCTCGCTTTGGG
GCCTCCGCGAGAAACGTGAGGAGGGAGGCTTGGGCGGGACTGTACTTGGA
AGGAACATTCAGAGCCCGCATCGCATCACGATATGGAGAAAGAAATACTT
GAGAAAAATTGGTTGCGCCTTGTTTCATTTATG back to topprotein sequence of rna6464 >rna6464-protein ID=rna6464-protein|Name=rna6464|organism=Nannochloropsis gaditana|type=polypeptide|length=437bp
MLTERQKADLHVAILEYLRDEGDSLAKTAELFALETGLEAAAVPKLTGTL
EKKWSAVVRLQKKLMELEERMLVAEQELKAYRGHSHMGGTRAPAAGDDRN
LPRAPAIRSFLGHRGGVTCLAMHPIFALLVSGSDDATIKTWDLESGAHEL
TLKGHTNGVQAVVFNRAGTLLASCSSDLSIKLWNFQSPSTAPECVRTLRG
HDHTISGLAFIGPTDAQLASCSRDTTVRLWEVSTGFCQRSLVGAHTDWVR
CIATSADGALLASGGSDRLVAVWALDTCAPVAVLREHSHVVEAVAFPPPG
VAVKIDGNKGGSTGLGSENGEASAGLQSQGSAEEAYLVSGSRDKTIMLWN
ARTGQCLLRLADHENWVRSVRFHPSGQFLLSVSDDRSLRVFDIAKARCIR
SLPDAHEQFVSALAQHPTLPYLATGSVNREIKLWECR back to topmRNA from alignment at CM002468.1:566981..568632+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna6464 ID=rna6464|Name=rna6464|organism=Nannochloropsis gaditana|type=mRNA|length=1652bp|location=Sequence derived from alignment at CM002468.1:566981..568632+ (Nannochloropsis gaditana)
CTGAGGACCACAGATCATGCATGCACACGGGTAGCAAGTAATGCTTTACT
TCTCTTTTGGTAATATGTAGTACATTTCCTTCAAACTAGCGTCGAAACCA
TCAGCCGCAGACGGAAATCATGCTGACAGAGCGTCAAAAGGCAGACCTGT
AAGTGTTTTTCCTATTTTCCTTGCTTGCTCGTTTCCGCCTTCATAACCGA
CGTTCGAGTTCTCAAGTCAAAGATCCTCGTCCTACGAATAACCTTTAAGG
CATGTGGCTATCTTGGAGTACCTTCGAGACGAAGGGGACAGTCTCGCGAA
GACAGCCGAGCTATTCGCCCTGGAGACCGGCctggaagcagcagcagtcc
cTAAATTGACAGGAACcttggaaaaaaaatggtcCGCGGTCGTGCGTTTG
CAGAAAAAATTGATGGAGTTGGAAGAGCGTATGTTGGTCGCTGAGCAAGA
ATTAAAAGCATACCGCGGACACTCACACATGGGAGGCACTCGGGCACCAG
CTGCGGGCGACGACCGCAAtctcccccgcgcccccgccATACGCTCCTTC
CTGGGCCATCGAGGGGGGGTGACGTGCTTGGCAATGCACCCGATCTTTGC
CTTACTGGTCTCGGGGAGTGATGATGCAACGATCAAGACATGGGATTTGG
AGAGCGGGGCGCACGAACTGACCCTGAAAGGGCACACCAATGGTGTCCAG
GCTGTGGTCTTCAACCGAGCGGGCACGCTACTAGCGTCCTGCTCTAGCGA
TCTCAGCATAAAACTGTGGAATTTCCAGTCCCCGAGCACCGCGCCCGAGT
GCGTACGGACACTACGGGGCCACGACCACACCATCTCGGGCCTGGCTTTT
ATTGGGCCAACGGACGCTCAgcttgcctcctgctcgaGAGACACCACAGT
GAGGCTGTGGGAGGTGAGCACGGGATTCTGCCAAAGGTCTTTAGTCGGCG
CGCACACCGATTGGGTACGCTGCATTGCCACAAGCGCGGACGGGGCGCTT
CTAGCCAGCGGGGGAAGTGACCGGCTGGTGGCGGTCTGGGCCTTGGACAC
GTGCGCCCCCGTCGCCGTCCTTAGGGAGCATTCCcacgtggtggaggctg
tggccttcccgccccctggGGTCGCGGTGAAAATCGATGGCAACAAGGGG
GGCAGCACCGGCCTAGGGTCTGAGAATGGTGAGGCAAGCGCCGGCCTCCA
GAGTCAGGGAtcggccgaggaggcctaCCTGGTCTCGGGCAGCCGCGACA
AGACAATCATGCTCTGGAATGCGAGGACGGGGCAGTGTCTGTTGAGACTC
GCAGACCACGAGAACTGGGTTCGTTCCGTCCGCTTCCACCCGTCGGGGCA
GTTTCTGTTAAGCGTCTCGGACGACAGGAGCCTGCGCGTGTTCGACATTG
CCAAGGCGCGCTGcatccgctccctccccgacgccCACGAGCAATTCGTT
TCGGCCCTGGCGCAGCACCCGACCTTGCCCTACCTGGCCACCGGCAGCGT
CAATCGTGAAATCAAGCTGTGGGAGTGTCGGTAGCTTTCGCCAGGCTCGC
CTAGATCGAGGAGCCTATGTACAGAGGGGCAATGTGAGGCTCTTAAAGCA
AGCACACGGAGGCGTCTCACAAATGCAGTAAAATAACAACGCAATACGTT
CG back to topCoding sequence (CDS) from alignment at CM002468.1:566981..568632+ >rna6464 ID=rna6464|Name=rna6464|organism=Nannochloropsis gaditana|type=CDS|length=2628bp|location=Sequence derived from alignment at CM002468.1:566981..568632+ (Nannochloropsis gaditana)
ATGCTGACAGAGCGTCAAAAGGCAGACCTGCATGTGGCTATCTTGGAGTA
CCTTCGAGACGAAGGGGACAGTCTCGCGAAGACAGCCGAGCTATTCGCCC
TGGAGACCGGCctggaagcagcagcagtcccTAAATTGACAGGAACcttg
gaaaaaaaatggtcCGCGGTCGTGCGTTTGCAGAAAAAATTGATGGAGTT
GGAAGAGCGTATGTTGGTCGCTGAGCAAGAATTAAAAGCATACCGCGGAC
ACTCACACATGGGAGGCACTCGGGCACCAGCTGCGGGCGACGACCGCAAt
ctcccccgcgcccccgccATACGCTCCTTCCTGGGCCATCGAGGGGGGGT
GACGTGCTTGGCAATGCACCCGATCTTTGCCTTACTGGTCTCGGGGAGTG
ATGATGCAACGATCAAGACATGGGATTTGGAGAGCGGGGCGCACGAACTG
ACCCTGAAAGGGCACACCAATGGTGTCCAGGCTGTGGTCTTCAACCGAGC
GGGCACGCTACTAGCGTCCTGCTCTAGCGATCTCAGCATAAAACTGTGGA
ATTTCCAGTCCCCGAGCACCGCGCCCGAGTGCGTACGGACACTACGGGGC
CACGACCACACCATCTCGGGCCTGGCTTTTATTGGGCCAACGGACGCTCA
gcttgcctcctgctcgaGAGACACCACAGTGAGGCTGTGGGAGGTGAGCA
CGGGATTCTGCCAAAGGTCTTTAGTCGGCGCGCACACCGATTGGGTACGC
TGCATTGCCACAAGCGCGGACGGGGCGCTTCTAGCCAGCGGGGGAAGTGA
CCGGCTGGTGGCGGTCTGGGCCTTGGACACGTGCGCCCCCGTCGCCGTCC
TTAGGGAGCATTCCcacgtggtggaggctgtggccttcccgccccctggG
GTCGCGGTGAAAATCGATGGCAACAAGGGGGGCAGCACCGGCCTAGGGTC
TGAGAATGGTGAGGCAAGCGCCGGCCTCCAGAGTCAGGGAtcggccgagg
aggcctaCCTGGTCTCGGGCAGCCGCGACAAGACAATCATGCTCTGGAAT
GCGAGGACGGGGCAGTGTCTGTTGAGACTCGCAGACCACGAGAACTGGGT
TCGTTCCGTCCGCTTCCACCCGTCGGGGCAGTTTCTGTTAAGCGTCTCGG
ACGACAGGAGCCTGCGCGTGTTCGACATTGCCAAGGCGCGCTGcatccgc
tccctccccgacgccCACGAGCAATTCGTTTCGGCCCTGGCGCAGCACCC
GACCTTGCCCTACCTGGCCACCGGCAGCGTCAATCGTGAAATCAAGCTGT
GGGAGTGTCGGTAGATGCTGACAGAGCGTCAAAAGGCAGACCTGCATGTG
GCTATCTTGGAGTACCTTCGAGACGAAGGGGACAGTCTCGCGAAGACAGC
CGAGCTATTCGCCCTGGAGACCGGCctggaagcagcagcagtcccTAAAT
TGACAGGAACcttggaaaaaaaatggtcCGCGGTCGTGCGTTTGCAGAAA
AAATTGATGGAGTTGGAAGAGCGTATGTTGGTCGCTGAGCAAGAATTAAA
AGCATACCGCGGACACTCACACATGGGAGGCACTCGGGCACCAGCTGCGG
GCGACGACCGCAAtctcccccgcgcccccgccATACGCTCCTTCCTGGGC
CATCGAGGGGGGGTGACGTGCTTGGCAATGCACCCGATCTTTGCCTTACT
GGTCTCGGGGAGTGATGATGCAACGATCAAGACATGGGATTTGGAGAGCG
GGGCGCACGAACTGACCCTGAAAGGGCACACCAATGGTGTCCAGGCTGTG
GTCTTCAACCGAGCGGGCACGCTACTAGCGTCCTGCTCTAGCGATCTCAG
CATAAAACTGTGGAATTTCCAGTCCCCGAGCACCGCGCCCGAGTGCGTAC
GGACACTACGGGGCCACGACCACACCATCTCGGGCCTGGCTTTTATTGGG
CCAACGGACGCTCAgcttgcctcctgctcgaGAGACACCACAGTGAGGCT
GTGGGAGGTGAGCACGGGATTCTGCCAAAGGTCTTTAGTCGGCGCGCACA
CCGATTGGGTACGCTGCATTGCCACAAGCGCGGACGGGGCGCTTCTAGCC
AGCGGGGGAAGTGACCGGCTGGTGGCGGTCTGGGCCTTGGACACGTGCGC
CCCCGTCGCCGTCCTTAGGGAGCATTCCcacgtggtggaggctgtggcct
tcccgccccctggGGTCGCGGTGAAAATCGATGGCAACAAGGGGGGCAGC
ACCGGCCTAGGGTCTGAGAATGGTGAGGCAAGCGCCGGCCTCCAGAGTCA
GGGAtcggccgaggaggcctaCCTGGTCTCGGGCAGCCGCGACAAGACAA
TCATGCTCTGGAATGCGAGGACGGGGCAGTGTCTGTTGAGACTCGCAGAC
CACGAGAACTGGGTTCGTTCCGTCCGCTTCCACCCGTCGGGGCAGTTTCT
GTTAAGCGTCTCGGACGACAGGAGCCTGCGCGTGTTCGACATTGCCAAGG
CGCGCTGcatccgctccctccccgacgccCACGAGCAATTCGTTTCGGCC
CTGGCGCAGCACCCGACCTTGCCCTACCTGGCCACCGGCAGCGTCAATCG
TGAAATCAAGCTGTGGGAGTGTCGGTAG back to top
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