rna6461, rna6461 (mRNA) Nannochloropsis gaditana

Overview
Namerna6461
Unique Namerna6461
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1782
Alignment locationCM002468.1:556913..557245 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100020g16.5357.mrna
Orig protein idgnl|cribi|Naga_100020g16.5357
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:556913..557245 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100020g16gene6243Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6461rna6461-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24224.1cds6445Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6461 ID=rna6461|Name=rna6461|organism=Nannochloropsis gaditana|type=mRNA|length=1782bp
ATGGCGTTTGTGTGTATCGGAAGCGACAAAGAAAAATACAATTCCATGAT
GTCAAACACCGATATCACGCACGAACACGCAATCGTGGGCAATCTTCTTC
CCACCAGCACTTACACGCGCGGTACAAAAAATATGGCTGCCCAACCCCGT
GTCCTAAACTATGACAGTTTGCCCGATCATGTCAAGCATTGCGAATATGC
TGTCCGTGGGGAGTTGTACCGAGCTGCTACGGAACGTGTCGCAGCAGGCA
AGGAGGTCATTTTCACGAACGTCGGCAACCCGCACGGATTGGGCCAAAAA
CCCATCACATTCATCAGACAGGTCTTCGCCCTCGTCAGCGCACCTTTTCT
CCTGGAGCACCCGGATGTGCACCGTATCTTCCCTCGGGATGTGATCGCGC
GCGCCAAGGCTTACATGAAGGCCGCACCGGGAGGCATTGGCGCGTACAGC
GACTCGAAGGGCCTGCCTATCGTGCGACAAGAGTTCGCAGATTTCCTGCA
GCGACGTGATGGCTTCGGATCTGATATTGATAAAATATTCCTGACCAATG
GAGCGAGCGAGGCCGTGCGTCTGGGCCTGACAGCCATGCTCCGCGGCCCC
CAAGACGGCATCCTAGTGCCGATCCCGCAGTACCCCCTGTACTCAGCCGC
CATTGAGCTGCTGAGCGGAAGCATGGTAGGATACTATTTGCACGAGGAGT
CGGGATGGTCCCTCGATTTCGAGGAACTGGAGCGGGCGGTGCGTGACGCG
AAGCGACAAGGGGTACGGGTACGCGGCATGGTCTTCATCAACCCCGGGAA
CCCGACGGGCCAGTGCCTCAGCCGTCAGGATTTGGAGGGCCTCGTGAAGT
TCGCCTACAAGCACAAGCTAGTTCTGATGGCGGACGAGGTCTACCAGGAC
AACATATATCAGACGGTGCGGCCCTTCGTGTCGGCACGTCATGTGGCGCT
AAGCATGGGTTCGCCCTACGCCCAGGGACTGGAGTTAGCCACGTTCCACA
CGGCCTCCAAGGGCGTGTACGGAGAGTGCGGCTTTCGAGGAGGCGTCATG
GAGCTTCTTAATTTCGACGAGCGCGTGGCGGACGAGCTGTACAAGCTGGC
CTCAATCAACTTATCCCCGAACGTGCCGGGCCAGGTGATCCTCGGGCTGA
TGGTCAACGGGCCCCGCCCCGGTGACGAGTCGTACGCACAATATGCGCGG
GAAAAGCAAGACTTGTTGGATTCCTTGCGGCGGCGGGCGCGGGCTATCAC
GGACGCTTTCAACAGCTGCGAGGGCATCGTCTGTCAAGAGACGGAAGGTG
CCATGTATTCCTTCCCGAAGATCACACTCCCCCCCGCTGCCATGGCAGCC
GCCAAGGCGGCTGGAAAGTCGCCGGACGTGTTCTATTGCCTCAAGCTGCT
TGAGACAACTGGGATCTCCACGGTCCCGGGCTCGGGCTTCAAGCAACGAG
ACGGCACCTTCCACTTCCGAACTACCATCCTTCCTCCGGAGAGCAAATTT
CAGGACATCATTCAACGGTTCCTGGCGTTCCATAGCGCCTTTATGGCCGA
ATACAAGGGGTCGACTGGACGCGGTACAGATAGCAGGGATGTGAAAAGAG
CAGAGCAGCAAGAGTCGGAGGTGAATTGGATGATACCAGCCCATAGGCCG
GACATGCCCAAGTCATATTATAGGAGCGATTCAGGCCGAACTGGGAGAGA
CGTGACTTGTTTTGCTAGTCTTCAGTATGTTTTATTCTCGATCATTATTG
ACACCTTTGACTTGCCCCTGTCTCTGAGATGA
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protein sequence of rna6461

>rna6461-protein ID=rna6461-protein|Name=rna6461|organism=Nannochloropsis gaditana|type=polypeptide|length=110bp
MLSKYTCAGMNFCPLAYFVQRKVDGQDDGFGGVYVGISISMRKRGQRQLP
VRSRVAQVQGFWGVSFSHVFDYICVHLLACASLFPCTSQFALKGGFHSCS
MFCMKTRIFR
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mRNA from alignment at CM002468.1:556913..557245+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6461 ID=rna6461|Name=rna6461|organism=Nannochloropsis gaditana|type=mRNA|length=333bp|location=Sequence derived from alignment at CM002468.1:556913..557245+ (Nannochloropsis gaditana)
ATGCTTAGTAAGTATACATGTGCGGGCATGAACTTTTGTCCACTGGCATA
CTTCGTGCAACGTAAGGTAGATGGCCAGGATGATGGATTCGGTGGCGTGT
ACGTAGGGATTAGTATCTCGATGAGGAAGCGTGGACAGCGACAACTGCCA
GTAAGATCAAGAGTGGCCCAAGTGCAAGGATTTTGGGGAGTGTCTTTCTC
TCATGTGTTTGATTACATTTGTGTACACTTGTTGGCTTGCGCCTCGCTCT
TTCCGTGTACATCACAATTTGCGTTGAAGGGTGGCTTCCACAGTTGCTCC
ATGTTTTGCATGAAGACACGCATATTTCGTTAA
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Coding sequence (CDS) from alignment at CM002468.1:556913..557245+

>rna6461 ID=rna6461|Name=rna6461|organism=Nannochloropsis gaditana|type=CDS|length=333bp|location=Sequence derived from alignment at CM002468.1:556913..557245+ (Nannochloropsis gaditana)
ATGCTTAGTAAGTATACATGTGCGGGCATGAACTTTTGTCCACTGGCATA
CTTCGTGCAACGTAAGGTAGATGGCCAGGATGATGGATTCGGTGGCGTGT
ACGTAGGGATTAGTATCTCGATGAGGAAGCGTGGACAGCGACAACTGCCA
GTAAGATCAAGAGTGGCCCAAGTGCAAGGATTTTGGGGAGTGTCTTTCTC
TCATGTGTTTGATTACATTTGTGTACACTTGTTGGCTTGCGCCTCGCTCT
TTCCGTGTACATCACAATTTGCGTTGAAGGGTGGCTTCCACAGTTGCTCC
ATGTTTTGCATGAAGACACGCATATTTCGTTAA
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Synonyms
Publications