rna6459, rna6459 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6459
Unique Name	rna6459
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1849
Alignment location	CM002468.1:552302..554012 +

Link to JBrowse

Properties


Property Name	Value
Product	amino acid permease family protein
Orig transcript id	gnl\|cribi\|Naga_100020g18.5351.mrna
Orig protein id	gnl\|cribi\|Naga_100020g18.5351
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002468.1	supercontig	CM002468.1:552302..554012 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100020g18	gene6241	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6459	rna6459-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24218.1	cds6443	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002468.1:552302..554012+
coding sequence from alignment at CM002468.1:552302..554012+

mRNA sequence

>rna6459 ID=rna6459|Name=rna6459|organism=Nannochloropsis gaditana|type=mRNA|length=1849bp
CAACAGCGGGGAAAAGGGACAGGAGGAGGACGAGGAGGACAGTCATCACG
CTCAGTGAGCGTCGCTGAGTCCGTTTGGGCGCGACAGACACGCCCAGCGC
GGAGTCGGACTCCGACCTTGCCGTCAACTCGGGTTCAATGTCACCTCTTA
GCAAGCCTTGGAATTGGGTTTTGCACAACATAATGTCAAAAAATCATAGG
TGGATGTTTCACTGCCTACTAAAATTTGCTCATATTTCTGGAACGAAAAA
GAAGGAGACTGGCACCTGCGACACAGTCAGCCGCGTTCCCGACAACAGCT
GACCGGTACTTCCTGGAAGGCGTAAACCGGGGATAATACGACGGCTTCAA
GCTAAAAGGAGGCGGTTCAATTTCTTCAGCATGGATTTTCTTGTGACAAG
ATCAGTCTTATGGACATATGGGATCGCGGCTATGCTCATAGCAATACCTC
AAGGGCATGCTTTCCAAATGTCGCATCAGATGCATAGGCCTTCCCCACGT
CTCATGGTGACGACAAAGGCATCAGTAGGCTCCAAGGTGGATACAGATGT
TTTGATTTGCGGGGCTGGTATTGCAGGATTGGCATTGGCGGCTGACCTAG
AGCGCCGTGGAGTTGATTATCGCTTGGTCGAGAGGGCAAGCTCTCCACGA
GAGGGCGGCACGGCCATCGGGTTCTGGACGAACGCGTGGCGATGCTTGGA
GAACCTCGGAGTGGCAGGGAAGCTGCGAAAGTCGAATTGGGAAGGTGACC
GCCTACGGATCGGCACTGCCATGAAGGGGAGGGAACTCACAAGTTTTGAC
CTCGGGGAATGCGATGGGGGACCGCACGAGTTTCGATACGTTCTGCGAAG
TGACTTGTTGCGTCAGTTGTTGCAAATCGTCCCCAAGCAACGCGTGATGT
ATAACAAAGGCTTGGAAGGATTTGGCGAGGACGAAGTGTCAGGAGGGATT
CTTGCAGAGTTTTCGGATGGGAGGAGAATGACGTCCAAGGCCCTGGTGGG
CGCCGATGGTGTAGGAAGCACAGTTCATAAGCTACTGTTCCCAGGGGAGA
AAGCGGCCAATTATGCAGGATATCAGGCCATTCGTGGGGTAGCGAAACTT
CCTCAAGGCGCCAAGACCAGCCCATACTTCACGTTCGAAAGAGGAGTGAT
AAACCAGGTATGGGGGGCGGGCGTCAGGCTGGGCACTTTCCGGATGTCCG
AGACGAACTTGTACTGGTTTGTCACCTACAACGGGCCTCAGAGCGGAGGG
GAGTCGGACGATGGGGCAGCATTGCTGGCCAAAGCTAGAAGCGTGCTCGA
TGGATGGGATGAAAGGTGGGGTGTCTCGACGATCCTCGCCGCCACGCCGC
CGACGGACGTGTTGCGTACGAGTATTGGAGATCGCTGGCCAAAGCCACAG
GGAAACTGGGGACGAGGATCTGTGACGCTGTTGGGAGACGCCGCGCATCC
CATGACGCCCAACCTGGGTCAGGGTGGGGCCGCTGGAATGGAGGATGCCC
TTGTTTTAGGGGAAAAGCTTGCAGCAACTTTCAAGAGAGGAAACCCCGGT
CCGGGAGAAGTGAGCCAAGCGTTGCGTACCTTTGAGAAAGAGCGCGGCCG
CAGGGTCTCATATCTGACTCTTAAATCATTCGTCTTTGGCTTTCTATTGC
AGCTGCCTTTCGCCCCTGTTACGTTCGTGAGGGACAACCTGGCCTTGCCA
CTCGTCTTCAAACCTCGGTCCTTTCTGGCACATACCAAATTTGACCCTCC
ACTCGCGCCCAAGCCCATTCGAACAACTCAACCCAAGAAAAAAACTGGGA
TATTTTATTTCTGATAAAGAAGAAGAAAAGTCACGACGTAGTTGTTGGG

protein sequence of rna6459

>rna6459-protein ID=rna6459-protein|Name=rna6459|organism=Nannochloropsis gaditana|type=polypeptide|length=553bp
MSETIAPLLAAKKAVIVSPPSPSPKEHQIGTAALAALIFFSVSGGPFGME
EAVQSAGPLVTIVGLLVLPMLWSVPEALITAECAPAFAEPSGSVAWVESA
FGPFWGWMKGYLSWLSGVTDNALYPVLIADYLTSFFHKEAETIGVVDGLH
RVLLLLGLTLVLTYLNWRGLDVVGTAAIVLMTLCMLPFVIMCIAALVQYN
KLDGSRLGELPEGGWGAVQWSSLLNILFWQLNYWDSVATFAGDVKNPGKA
FPRALAIAVALVVLSTLVPLATAVTGTRFAYTEYTDGFFGKVGSDLVGKW
LGALIALAAALSSVGMFEAEMASDAFSLMGLAERGHLPAFFAHRSRHGTP
SAAIVCSACGITFLASMSFLEIVQVLNFLYMLAMLIEFAAFVRLRVVLPC
LPRPYRIPLGTWGICAMLSGPVMLLVCMLAMAPLKTWLICGVAVLMGCGL
YYVLHHPCTRRRCVFLQDPFERRRDASTSSVLRVYGTDDLGYVLEYPSDW
QFTISFRTGIGGPNYPNTFLQEKRSAMALHFRPKMCVKFQRGYGTWSYIP
RHV

mRNA from alignment at CM002468.1:552302..554012+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6459 ID=rna6459|Name=rna6459|organism=Nannochloropsis gaditana|type=mRNA|length=1711bp|location=Sequence derived from alignment at CM002468.1:552302..554012+ (Nannochloropsis gaditana)
ATGTCTGAGACCATCGCACCATTGTTGGCCGCGAAAAAAGCGGTCATTGT
CAgtccgccgtctccctcccccaaagAGCATCAGATTGGGACTGCTGCGC
TGGCGGCCTTGATTTTCTTCTCAGTTTCAGGGGGACCTTTTGGCATGGAA
GAAGCAGTCCAATCGGCAGGCCCGCTCGTCACAATTGTTGGGTTATTGGT
CCTGCCAATGCTATGGTCTGTCCCGGAAGCACTCATCACGGCAGAGTGTG
CACCAGCGTTTGCTGAGCCATCTGGATCTGTGGCCTGGGTCGAGTCCGCA
TTTGGTCCCTTTTGGGGATGGATGAAGGGTTACCTATCCTGGTTGAGTGG
CGTGACGGACAACGCCCTTTATCCAGTGCTCATCGCAGACTATctcacct
ccttctttcacAAAGAAGCGGAAACTATTGGGGTCGTGGACGGTCTCCAC
CGAGTCCTACTTCTCCTGGGTCTGACCCTGGTCCTTACGTATCTGAACTG
GCGGGGCCTGGACGTGGTGGGAACGGCTGCCATCGTCCTGATGACGCTGT
GCATGCTCCCGTTCGTAATCATGTGCATCGCTGCGCTGGTTCAATATAAC
AAGCTTGACGGTAGCCGCTTGGGGGAGCTGCCGGAGGGCGGATGGGGGGC
CGTGCAGTGGTCCAGCCTCCTGAACATCTTATTCTGGCAGCTCAATTACT
GGGACTCGGTGGCCACATTCGCCGGTGACGTGAAGAACCCGGGCAAGGCT
TTCCCCCGAGCCTTGGCCATCGCCGTGGCGCTGGTGGTGCTCTCTACCCT
GGTGCCTCTGGCGACGGCTGTGACGGGCACCCGGTTCGCCTACACGGAGT
ACACCGACGGGTTCTTCGGGAAGGTCGGTTCGGACCTGGTAGGGAAGTGG
CTCGGAGCCTTGAtcgccctggcggcggccttATCTTCTGTCGGTATGTT
TGAAGCTGAAATGGCCAGCGACGCCTTCTCCCTGATGGGCCTGGCCGAAC
GGGGCCACCTGcctgccttcttcgcccACCGGTCGCGACATGGCACTCCT
TCCGCAGCCATCGTGTGCAGTGCATGTGGCATCACGTTTTTGGCGTCCAT
GTCCTTTTTGGAAATCGTACAGGTCCTCAATTTCTTGTACATGCTGGCCA
TGCTGATCGAGTTCGCGGCGTTTGTTCGTCTCCGCGTCGTGCTCCCCTGC
TTGCCTCGACCCTACCGCATCCCGCTAGGGACGTGGGGCATCTGCGCCAT
GCTATCAGGACCGGTAATGTTGCTTGTCTGTATGCTGGCAATGGCTCCAC
TCAAGACCTGGCTCATCTGTGGAGTCGCTGTCTTGATGGGTTGCGGTTTA
TACTACGTACTTCACCATCCATGCACCCGTCGGCGTTGCGTGTTCCTGCA
GGACCCATTCGAGCGTCGAAGGGACGCTTCTACTAGCAGTGTTCTGCGAG
TCTACGGCACCGATGATCTCGGATACGTGCTGGAAGTGACTGACGATGAA
GCGAacggagacgaggaaaagatggaggcTGTAGTACCCGTCTGATTGGC
AGTTTACAATCTCTTTTAGAACAGGGATAGGCGGCCCCAATTATCCGAAT
ACATTCCTacaggaaaagaggagtgCGATGGCCCTCCACTTTCGCCCCAA
AATGTGTGTCAAATTTCAAAGGGGGTATGGAACGTGGAGTTACATTCCCA
GGCATGTGTAA

Coding sequence (CDS) from alignment at CM002468.1:552302..554012+

>rna6459 ID=rna6459|Name=rna6459|organism=Nannochloropsis gaditana|type=CDS|length=3324bp|location=Sequence derived from alignment at CM002468.1:552302..554012+ (Nannochloropsis gaditana)
ATGTCTGAGACCATCGCACCATTGTTGGCCGCGAAAAAAGCGGTCATTGT
CAgtccgccgtctccctcccccaaagAGCATCAGATTGGGACTGCTGCGC
TGGCGGCCTTGATTTTCTTCTCAGTTTCAGGGGGACCTTTTGGCATGGAA
GAAGCAGTCCAATCGGCAGGCCCGCTCGTCACAATTGTTGGGTTATTGGT
CCTGCCAATGCTATGGTCTGTCCCGGAAGCACTCATCACGGCAGAGTGTG
CACCAGCGTTTGCTGAGCCATCTGGATCTGTGGCCTGGGTCGAGTCCGCA
TTTGGTCCCTTTTGGGGATGGATGAAGGGTTACCTATCCTGGTTGAGTGG
CGTGACGGACAACGCCCTTTATCCAGTGCTCATCGCAGACTATctcacct
ccttctttcacAAAGAAGCGGAAACTATTGGGGTCGTGGACGGTCTCCAC
CGAGTCCTACTTCTCCTGGGTCTGACCCTGGTCCTTACGTATCTGAACTG
GCGGGGCCTGGACGTGGTGGGAACGGCTGCCATCGTCCTGATGACGCTGT
GCATGCTCCCGTTCGTAATCATGTGCATCGCTGCGCTGGTTCAATATAAC
AAGCTTGACGGTAGCCGCTTGGGGGAGCTGCCGGAGGGCGGATGGGGGGC
CGTGCAGTGGTCCAGCCTCCTGAACATCTTATTCTGGCAGCTCAATTACT
GGGACTCGGTGGCCACATTCGCCGGTGACGTGAAGAACCCGGGCAAGGCT
TTCCCCCGAGCCTTGGCCATCGCCGTGGCGCTGGTGGTGCTCTCTACCCT
GGTGCCTCTGGCGACGGCTGTGACGGGCACCCGGTTCGCCTACACGGAGT
ACACCGACGGGTTCTTCGGGAAGGTCGGTTCGGACCTGGTAGGGAAGTGG
CTCGGAGCCTTGAtcgccctggcggcggccttATCTTCTGTCGGTATGTT
TGAAGCTGAAATGGCCAGCGACGCCTTCTCCCTGATGGGCCTGGCCGAAC
GGGGCCACCTGcctgccttcttcgcccACCGGTCGCGACATGGCACTCCT
TCCGCAGCCATCGTGTGCAGTGCATGTGGCATCACGTTTTTGGCGTCCAT
GTCCTTTTTGGAAATCGTACAGGTCCTCAATTTCTTGTACATGCTGGCCA
TGCTGATCGAGTTCGCGGCGTTTGTTCGTCTCCGCGTCGTGCTCCCCTGC
TTGCCTCGACCCTACCGCATCCCGCTAGGGACGTGGGGCATCTGCGCCAT
GCTATCAGGACCGGTAATGTTGCTTGTCTGTATGCTGGCAATGGCTCCAC
TCAAGACCTGGCTCATCTGTGGAGTCGCTGTCTTGATGGGTTGCGGTTTA
TACTACGTACTTCACCATCCATGCACCCGTCGGCGTTGCGTGTTCCTGCA
GGACCCATTCGAGCGTCGAAGGGACGCTTCTACTAGCAGTGTTCTGCGAG
TCTACGGCACCGATGATCTCGGATACGTGCTGGAATACCCGTCTGATTGG
CAGTTTACAATCTCTTTTAGAACAGGGATAGGCGGCCCCAATTATCCGAA
TACATTCCTacaggaaaagaggagtgCGATGGCCCTCCACTTTCGCCCCA
AAATGTGTGTCAAATTTCAAAGGGGGTATGGAACGTGGAGTTACATTCCC
AGGCATGTGTAAATGTCTGAGACCATCGCACCATTGTTGGCCGCGAAAAA
AGCGGTCATTGTCAgtccgccgtctccctcccccaaagAGCATCAGATTG
GGACTGCTGCGCTGGCGGCCTTGATTTTCTTCTCAGTTTCAGGGGGACCT
TTTGGCATGGAAGAAGCAGTCCAATCGGCAGGCCCGCTCGTCACAATTGT
TGGGTTATTGGTCCTGCCAATGCTATGGTCTGTCCCGGAAGCACTCATCA
CGGCAGAGTGTGCACCAGCGTTTGCTGAGCCATCTGGATCTGTGGCCTGG
GTCGAGTCCGCATTTGGTCCCTTTTGGGGATGGATGAAGGGTTACCTATC
CTGGTTGAGTGGCGTGACGGACAACGCCCTTTATCCAGTGCTCATCGCAG
ACTATctcacctccttctttcacAAAGAAGCGGAAACTATTGGGGTCGTG
GACGGTCTCCACCGAGTCCTACTTCTCCTGGGTCTGACCCTGGTCCTTAC
GTATCTGAACTGGCGGGGCCTGGACGTGGTGGGAACGGCTGCCATCGTCC
TGATGACGCTGTGCATGCTCCCGTTCGTAATCATGTGCATCGCTGCGCTG
GTTCAATATAACAAGCTTGACGGTAGCCGCTTGGGGGAGCTGCCGGAGGG
CGGATGGGGGGCCGTGCAGTGGTCCAGCCTCCTGAACATCTTATTCTGGC
AGCTCAATTACTGGGACTCGGTGGCCACATTCGCCGGTGACGTGAAGAAC
CCGGGCAAGGCTTTCCCCCGAGCCTTGGCCATCGCCGTGGCGCTGGTGGT
GCTCTCTACCCTGGTGCCTCTGGCGACGGCTGTGACGGGCACCCGGTTCG
CCTACACGGAGTACACCGACGGGTTCTTCGGGAAGGTCGGTTCGGACCTG
GTAGGGAAGTGGCTCGGAGCCTTGAtcgccctggcggcggccttATCTTC
TGTCGGTATGTTTGAAGCTGAAATGGCCAGCGACGCCTTCTCCCTGATGG
GCCTGGCCGAACGGGGCCACCTGcctgccttcttcgcccACCGGTCGCGA
CATGGCACTCCTTCCGCAGCCATCGTGTGCAGTGCATGTGGCATCACGTT
TTTGGCGTCCATGTCCTTTTTGGAAATCGTACAGGTCCTCAATTTCTTGT
ACATGCTGGCCATGCTGATCGAGTTCGCGGCGTTTGTTCGTCTCCGCGTC
GTGCTCCCCTGCTTGCCTCGACCCTACCGCATCCCGCTAGGGACGTGGGG
CATCTGCGCCATGCTATCAGGACCGGTAATGTTGCTTGTCTGTATGCTGG
CAATGGCTCCACTCAAGACCTGGCTCATCTGTGGAGTCGCTGTCTTGATG
GGTTGCGGTTTATACTACGTACTTCACCATCCATGCACCCGTCGGCGTTG
CGTGTTCCTGCAGGACCCATTCGAGCGTCGAAGGGACGCTTCTACTAGCA
GTGTTCTGCGAGTCTACGGCACCGATGATCTCGGATACGTGCTGGAATAC
CCGTCTGATTGGCAGTTTACAATCTCTTTTAGAACAGGGATAGGCGGCCC
CAATTATCCGAATACATTCCTacaggaaaagaggagtgCGATGGCCCTCC
ACTTTCGCCCCAAAATGTGTGTCAAATTTCAAAGGGGGTATGGAACGTGG
AGTTACATTCCCAGGCATGTGTAA

Synonyms

Publications