rna6456, rna6456 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6456
Unique Name	rna6456
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2040
Alignment location	CM002468.1:543326..546153 +

Link to JBrowse

Properties


Property Name	Value
Product	sn1-specific diacylglycerol lipase alpha-like protein
Orig transcript id	gnl\|cribi\|Naga_100020g21.5358.mrna
Orig protein id	gnl\|cribi\|Naga_100020g21.5358
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002468.1	supercontig	CM002468.1:543326..546153 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100020g21	gene6238	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6456	rna6456-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24225.1	cds6440	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002468.1:543326..546153+
coding sequence from alignment at CM002468.1:543326..546153+

mRNA sequence

>rna6456 ID=rna6456|Name=rna6456|organism=Nannochloropsis gaditana|type=mRNA|length=2040bp
CGTCACTCTCCACTTTTTCTTTCCCTTATTGAGGTTGAAGACGCAGCAAT
CTGCTCTGAGCGCCCTGTGATTTGTGATTTACTCAAAGTCAGGACGAGTG
TTGCAAGACGGGGATAGAAGTAGACCGCTCCCGTGCCAAGTTCTATGCTC
TCGGCGAGCCTCGCGACAAAAGCCCTGTCGGCGGTCTCACCACCCGCGGA
AGCCGACGCGCGACGAGTGTGCTCCGGGCACTTCAAAGGCAGTGCAGGAA
TGCCTGTCCTTGGGGTCGTTTGGGGGTCGTTTGGAGGTGCCCCCGTTGAG
TGAATGTAAAGTGGCAGAGGTGGAAGGAAACGTGGGTGGTGCGTGTTCCA
AGCAAAGGGGGCGGCGGGGAGGCGACAGGGCCTTGCACTCTGGCAGGCGT
GACGATGAAACGCTAACCATAAGAGACCACGCAGTGCACGCAGGTATATG
GCGGACGAGGAGGACTGGGGCCCTGCCCCACTGCCAGACTTTAATCGACT
TCGGCTTGGTGGACGGGGCGCACCTGCTACTAGCGCTAATGTAACACCGT
CCGAAGCTGCAGGGATAGCTGGAAAGGGCCTGTCTTCGGCGGGCATCGTG
GCAGTGACGACGGTCGAGCGTGACGCTGCCATCGATCCAATTTTGACGGG
GGCAATGGACAATCCGAGGGAGCGCGTAAATGTGCTCAGATACGAGGATG
CCATGGTACAATTTATGAAGGCCGGTACGAAACAGCAGCAGCTGGAGTTG
TCCCCGAACTCATCTTACCACCGGCTCGTCTTGTATCGCCTCGCCCATCG
TTTCGGCCTGCACGGGGCCGCGGAGGGAGAGGTAGGGGCCGACGCGGGCG
GGAACCGGAGCGTCAAATTTTTCAAGACACCACAGAGCAGCATTCCCCAT
CTCTTACTCATCGACACGTGTGGAAAAGAGGGGGTGAACGGGAGTGGCGA
AGGAAGCGGCAGCGGGAGTGCCAAAGCCCCCGTAATGAGGCTTATGCAGC
GCCGGCGGACGCCCGGGGGAGACTCAGAAGCGAAGGAAGGAGCGGTGCGG
GGCAAGGGTTCCGGCGAGGAGAAGACATCCAGTACGGTGAACGGGGCTAG
AAGCGTGATCGACAGAGAGAAGGCCTACGCGGAGGCCAGGGCCCGGATTT
TTGGCTCCTCCTCGAGCACGACCGCCTCCACCAGCTCCCCTTCGCCCACC
AGACCTCTAGATAGCAAGGGGAAGACAGCCAACCCTTCGAACGGAGCCAA
GCTCGGGCTCGGCAGGACATCACGGGCAGGGTCGCCTGCGGCGGACGGCC
TTTCCACCCCCCCGCCCTCCGCGGGCCCCGGGCTCCTGGAGGAGGGGGCG
CGGTCGAGTCTCGAGGAGGAAGCGAGGAAACCGAGAGGAGGGGCGGGGGA
GCAGGAGGAGAAATGCAACGGCGGGAAAATGGAGTGGGGCGAGAGCAAGG
TCTTGTGGCGAAACCGGGAGGCAGAGCGCTACGACCCGGACTTCGTGCGA
CACCGGCCACCTAGGGGATTGGGCGGGGGGGACCCCTACGGCCCTGGAGG
GAGGGGGGCGGTGTACGGTGTCCCTCCGCAGCCCCCCTACGGCGCGATGC
CTGGCATGACTATTCCTTCCAACCCTGCCCTGGCGGCGTACCCCCCGGCT
TCCTACGCACAGCCGCACCTGCAGATGCAGCTGGAGCAGCACCAATGGGC
CGCCTATCACCAGCACCCACAGGCGCACCACCAGGGAGCTTTCTTGGCCG
CCCATCATCCCCCCCACGCCTACTATAACGACCCTCGGTATGCGTCACAG
TCTCCACATCCCTACCAGCAGGGGGGGGGGGGCAGGGGCCGGGGGGAGAG
CCGATCCATCCTTGAGGGGGCCCTCTCCGCCGCCCCTCTCGCGCGCATTG
AGCGAGGGGAGCGATGTAGACCTAAGACAGAGAGAAGATGAATTTCCCCC
GCTGAGTAGATAGGTAAATCTAGGAAAATTAAGGAGTTCAGAGGCTGAAA
GCCGAATTCTTAAAGAAATCGAGACACGAGACGTCAAGGG

protein sequence of rna6456

>rna6456-protein ID=rna6456-protein|Name=rna6456|organism=Nannochloropsis gaditana|type=polypeptide|length=767bp
MPRMELMGRHYHIASDAVTVPAFCMAVGRLVWSAVVLGLFLHLQYLLQSC
SRPGIVDTFVGLSITLFLATVLVELAIVAVSQRGSIVHTQARKAVGPLVA
LHTCLGGVQLVVALVGLVILSNPKALVMCDTISLQNRVDLIVALIVISQL
ADVSMKACCCATLVGEPVGEEAEQAVHHFEQHESLASYSAAEDRWRGRCS
FLCTCLRYTTCHLFSSAAGASGPEGGDIGDMEVVARVMADIFHSEGFLDV
LPSDILAGFVLLRHVQKAQEHEMVSRRGTELLEAEERFLREQLEEGGSAA
AAAADVASSTSDSKGMGASGTSTVTPGVHPRVRFQCGHYLVKHALSRDDP
GDRQVLEEGTHFEAYALAMYSWMMFTYAKTPCLALPALSARRLFRMPKGP
RSRVHGDLGAVLGDNWLRGHEAGLWEWLNGREGCELAYATFINTLYERPY
GIFVDHKWQCVVVAIRGTLSLEDLLNDAHAEPGPLDAMGKAWGFPGDGEY
GHVGMANAADCIAKDLCKHRILQRLIQRDHGDSPPAGPHTPLTKSSKGYS
LRIVGHSLGAGAAVFLSLMLRRDFPDLRCLAYCTPGGLLSPGLAEYTKAF
TLTFVLGRDLVPRLTLDAVRGLRDDILRLLARCRANKNTVLRSMMEKDSR
AAVDRLLYSSQDVPPSEFLTQLQAYEEQMRRVDRRMVQVRLIPAGRIVHL
VKSHRVERERCGGLLGRWYKQCYTPVWALPEDLSEIYVSSTMALEHFPHI
VLYNMQDVCEEWGIPVS

mRNA from alignment at CM002468.1:543326..546153+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6456 ID=rna6456|Name=rna6456|organism=Nannochloropsis gaditana|type=mRNA|length=2828bp|location=Sequence derived from alignment at CM002468.1:543326..546153+ (Nannochloropsis gaditana)
TCGCGAGGCTCGCCGAGAGCATAGAACTTGGCACGGGAGCGGTCTACTTC
TATCCCCGTCTTGCAACACTCGTCCTGACTTTGAGTAAATCACAAATCAC
AGGGCGCTCAGAGCAGATTGCTGCGTCTTCAACCTCAataagggaaagaa
aaagtggAGAGTGACGGGAATTgaccccaaaaaaacttGCTTCTGGTTTC
TACCCGCCTCAAACCTCCTTGAATTCAATTAGCCATGCCCCGAATGGAAC
TTATGGGACGGCATTACCATATTGCCAGCGACGCGGTAACCGTGCCAGCT
TTCTGTATGGCAGTGGGTAGGCTAGTGTGGTCGGCGGTGGTGCTAGGTCT
TTTCTTGCACTTGCAGTACTTGTTGCAGTCCTGCTCGCGCCCCGGCATTG
TCGATACTTTTGTTGGGCTCTCAATCACCCTCTTTCTAGCCACGGTGCTG
GTGGAACTGGCAATTGTTGCAGTATCACAACGTGGTTCTATTGTGCATAC
GCAGGCCCGGAAGGCCGTGGGTCCGCTGGTCGCATTGCATACTTGTCTCG
GAGGTGTGCAGCTCGTGGTTGCCTTGGTAGGATTGGTCATCCTCTCCAAC
CCCAAGGCATTGGTCATGTGCGACACCATAAGCCTTCAAAATCGCGTAGA
TCTCATCGTGGCCCTCATAGTCATTTCACAGCTTGCGGATGTTTCCATGA
AAGCTTGCTGCTGCGCGACCCTGGTGGGGGAGCCCGtcggcgaggaggcc
gagcaggCGGTGCACCACTTCGAGCAGCACGAGTCTCTGGCCTCCTATTC
CGCTGCTGAGGATCGTTGGCGCGGTCGGTGTAGCTTTCTGTGCACGTGCT
TGCGGTACACGACCTGCCACCTCTTTTCGAGCGCGGCGGGCGCGAgcggg
ccggaggggggcgacatcggggacatggaggtggtggcgcgcGTCATGGC
GGACATCTTCCACTCCGAGGGCTTCCTGGACGTGCTGCCCTCCGACATCC
TGGCCGGGTTCGTCCTGCTTCGACACGTACAGAAGGCGCAAGAGCACGAG
ATGGTGTCGAGGCGCGGAACGGAGCtgttggaggcggaggagcgctTCCT
AAGAGAGCaactggaagagggagggtccgccgccgccgccgccgccgacg
tCGCCTCCAGTACCTCTGATTCAAAGGGAATGGGGGCGTCTGGGACAAGC
ACTGTGACGCCAGGGGTGCACCCGCGCGTTCGCTTCCAGTGCGGGCATTA
CCTGGTGAAGCACGCTCTGTCTCGCGACGACCCCGGGGACCGGCAagtgc
tggaggaaggcacgCACTTCGAGGCCTACGCCCTGGCTATGTACTCTTGG
ATGATGTTCACCTACGCCAAGACGCCTTGCCTCGCACTTCCAGCGCTCAG
CGCCCGAAGACTCTTCCGCATGCCCAAAGGTCCTCGCTCGCGCGTGCACG
GGGACCTTGGGGCCGTCTTGGGGGACAACTGGCTCCGAGGTCACGAGGCA
GGACTCTGGGAGTGGTTAAACGGGCGAGAGGGCTGTGAGTTGGCCTACGC
GACATTTATCAACACGCTGTATGAGCGTCCGTACGGCATCTTTGTTGATC
ACAAGTGGCAgtgcgtggtggtggccatcCGAGGCACCCTGTCCTTGGAA
GACCTTCTCAACGATGCGCACGCGGAGCCCGGGCCCCTTGACGCGATGGG
GAAAGCTTGGGGGTTTCCTGGAGATGGAGAGTACGGGCATGTTGGCATGG
CCAACGCCGCTGACTGCATCGCGAAAGACCTGTGCAAGCACCGAATCCTA
CAGCGGCTTATCCAGCGGGACCACGGCGACTCCCCTCCTGCCGGACCCCA
CACGCCCTTGACCAAATCCAGTAAGGGATACAGCTTGCGCATAGTCGGCC
ATTCCCTCGGGGCGGGTGCGGCggtttttctctcccttatGCTTCGCCGC
GACTTCCCGGACCTCCGCTGCCTCGCTTACTGCACCCCCGGGGGCCTCCT
ATCTCCCGGCTTGGCCGAGTACACCAAGGCCTTCACGCTCACTTTCGTCC
TGGGCCGTGACTTGGTTCCTCGACTTACCCTCGACGCCGTCCGCGGACTT
CGCGATGACATCCTCCGTCTGCTTGCCCGGTGCCGTGCGAACAAGAACAC
CGTGCTCCGGAGcatgatggagaaggactcGCGGGCAGCGGTCGACCGGC
TCCTTTACTCGTCCCAGGACGTGCCGCCTTCCGAATTCTTGACGCAATTG
CAGGCGTACGAAGAGCAGATGCGACGAGTGGATCGGCGTATGGTCCAAGT
GCGGTTGATCCCCGCCGGGCGCATTGTTCACCTCGTCAAGTCTCACCGGG
TGGAGCGTGAAAGGTGTGGGGGTCTCTTGGGGAGGTGGTACAAACAGTGC
TACACGCCCGTGTGGGCGCTTCCGGAGGACCTGAGTGAGATCTACGTCTC
GTCTACGATGGCGCTGGAGCACTTTCCGCACATCGTGCTGTACAATATGC
AAGACGTGTGCGAGGAGTGGGGTATTCCCGTCAGCTAAGTGCGATGAATG
CTAGCAGACCTTTCATCCGTGATTGCAGGAAAGGGACATGCTGGCACAGT
GTACAGCTTCTTGTAGCGTATTATAAGTGACCCTCCGCTGGTCGCAGGTC
CGCTGTTAAAAGTATCTGAGCCACACAAAGGACTGAGGGCAAAGTACGAT
ATTGGAGGATTGGACTTTGCAAGCGAGGACACCACCCTAAACTCAAAGAA
TCGACGTCTTCGTGTTTGATACTTGTCATTTGCTTATCTTTTAAAAAGCT
CAAGCTTAATTTTACAAAAAAATTCGAC

Coding sequence (CDS) from alignment at CM002468.1:543326..546153+

>rna6456 ID=rna6456|Name=rna6456|organism=Nannochloropsis gaditana|type=CDS|length=2304bp|location=Sequence derived from alignment at CM002468.1:543326..546153+ (Nannochloropsis gaditana)
ATGCCCCGAATGGAACTTATGGGACGGCATTACCATATTGCCAGCGACGC
GGTAACCGTGCCAGCTTTCTGTATGGCAGTGGGTAGGCTAGTGTGGTCGG
CGGTGGTGCTAGGTCTTTTCTTGCACTTGCAGTACTTGTTGCAGTCCTGC
TCGCGCCCCGGCATTGTCGATACTTTTGTTGGGCTCTCAATCACCCTCTT
TCTAGCCACGGTGCTGGTGGAACTGGCAATTGTTGCAGTATCACAACGTG
GTTCTATTGTGCATACGCAGGCCCGGAAGGCCGTGGGTCCGCTGGTCGCA
TTGCATACTTGTCTCGGAGGTGTGCAGCTCGTGGTTGCCTTGGTAGGATT
GGTCATCCTCTCCAACCCCAAGGCATTGGTCATGTGCGACACCATAAGCC
TTCAAAATCGCGTAGATCTCATCGTGGCCCTCATAGTCATTTCACAGCTT
GCGGATGTTTCCATGAAAGCTTGCTGCTGCGCGACCCTGGTGGGGGAGCC
CGtcggcgaggaggccgagcaggCGGTGCACCACTTCGAGCAGCACGAGT
CTCTGGCCTCCTATTCCGCTGCTGAGGATCGTTGGCGCGGTCGGTGTAGC
TTTCTGTGCACGTGCTTGCGGTACACGACCTGCCACCTCTTTTCGAGCGC
GGCGGGCGCGAgcgggccggaggggggcgacatcggggacatggaggtgg
tggcgcgcGTCATGGCGGACATCTTCCACTCCGAGGGCTTCCTGGACGTG
CTGCCCTCCGACATCCTGGCCGGGTTCGTCCTGCTTCGACACGTACAGAA
GGCGCAAGAGCACGAGATGGTGTCGAGGCGCGGAACGGAGCtgttggagg
cggaggagcgctTCCTAAGAGAGCaactggaagagggagggtccgccgcc
gccgccgccgccgacgtCGCCTCCAGTACCTCTGATTCAAAGGGAATGGG
GGCGTCTGGGACAAGCACTGTGACGCCAGGGGTGCACCCGCGCGTTCGCT
TCCAGTGCGGGCATTACCTGGTGAAGCACGCTCTGTCTCGCGACGACCCC
GGGGACCGGCAagtgctggaggaaggcacgCACTTCGAGGCCTACGCCCT
GGCTATGTACTCTTGGATGATGTTCACCTACGCCAAGACGCCTTGCCTCG
CACTTCCAGCGCTCAGCGCCCGAAGACTCTTCCGCATGCCCAAAGGTCCT
CGCTCGCGCGTGCACGGGGACCTTGGGGCCGTCTTGGGGGACAACTGGCT
CCGAGGTCACGAGGCAGGACTCTGGGAGTGGTTAAACGGGCGAGAGGGCT
GTGAGTTGGCCTACGCGACATTTATCAACACGCTGTATGAGCGTCCGTAC
GGCATCTTTGTTGATCACAAGTGGCAgtgcgtggtggtggccatcCGAGG
CACCCTGTCCTTGGAAGACCTTCTCAACGATGCGCACGCGGAGCCCGGGC
CCCTTGACGCGATGGGGAAAGCTTGGGGGTTTCCTGGAGATGGAGAGTAC
GGGCATGTTGGCATGGCCAACGCCGCTGACTGCATCGCGAAAGACCTGTG
CAAGCACCGAATCCTACAGCGGCTTATCCAGCGGGACCACGGCGACTCCC
CTCCTGCCGGACCCCACACGCCCTTGACCAAATCCAGTAAGGGATACAGC
TTGCGCATAGTCGGCCATTCCCTCGGGGCGGGTGCGGCggtttttctctc
ccttatGCTTCGCCGCGACTTCCCGGACCTCCGCTGCCTCGCTTACTGCA
CCCCCGGGGGCCTCCTATCTCCCGGCTTGGCCGAGTACACCAAGGCCTTC
ACGCTCACTTTCGTCCTGGGCCGTGACTTGGTTCCTCGACTTACCCTCGA
CGCCGTCCGCGGACTTCGCGATGACATCCTCCGTCTGCTTGCCCGGTGCC
GTGCGAACAAGAACACCGTGCTCCGGAGcatgatggagaaggactcGCGG
GCAGCGGTCGACCGGCTCCTTTACTCGTCCCAGGACGTGCCGCCTTCCGA
ATTCTTGACGCAATTGCAGGCGTACGAAGAGCAGATGCGACGAGTGGATC
GGCGTATGGTCCAAGTGCGGTTGATCCCCGCCGGGCGCATTGTTCACCTC
GTCAAGTCTCACCGGGTGGAGCGTGAAAGGTGTGGGGGTCTCTTGGGGAG
GTGGTACAAACAGTGCTACACGCCCGTGTGGGCGCTTCCGGAGGACCTGA
GTGAGATCTACGTCTCGTCTACGATGGCGCTGGAGCACTTTCCGCACATC
GTGCTGTACAATATGCAAGACGTGTGCGAGGAGTGGGGTATTCCCGTCAG
CTAA

Synonyms

Publications