rna6448, rna6448 (mRNA) Nannochloropsis gaditana

Overview
Namerna6448
Unique Namerna6448
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length234
Alignment locationCM002468.1:529161..529879 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100020g30.5348.mrna
Orig protein idgnl|cribi|Naga_100020g30.5348
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:529161..529879 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100020g30gene6230Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24215.1cds6432Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6448rna6448-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6448 ID=rna6448|Name=rna6448|organism=Nannochloropsis gaditana|type=mRNA|length=234bp
ATGGTGATTTATTATCGTGGAGCGTTGACACGGTTCATAACTTTATCGGT
GTTGTCATCTTCGATCCAGTCTTCGATGGCCTCCACAGCGTCGATCAACA
TATCATCAAGTACCTTGCGTTCTGACCTGCTAAACTGGCCCACCGAGCCT
GTTTGGCGAAGACGAATCTGGCCTATGTCCAACGCCACCTCGTCAACTAC
CACCAGCACAGACGAGACTGGCAGTTTAAAATAA
back to top

protein sequence of rna6448

>rna6448-protein ID=rna6448-protein|Name=rna6448|organism=Nannochloropsis gaditana|type=polypeptide|length=103bp
MTGPWTHAEGRLSVRPSMLDDRNGVQKAMRIALNLAVMISAGKHPRLAYF
ERFLSMVASPRRRKVAQKKPASFPHHCHLRYYFAAAQALRYTSSWEIFED
RAY
back to top

mRNA from alignment at CM002468.1:529161..529879-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6448 ID=rna6448|Name=rna6448|organism=Nannochloropsis gaditana|type=mRNA|length=719bp|location=Sequence derived from alignment at CM002468.1:529161..529879- (Nannochloropsis gaditana)
CTGCTTGCAGCTCTGCTCGTCGTGTCGATTCCGCTTCCACCTCTTTTACT
TTTTTACTCAGGGCTGTTACCTACGAGGAAGACCATTTATAAAAGGATAG
TGAATACCACTGCGTCACTGCACCGACTGTACCACAAAATGTGTCCAAGA
CGATCTCACTTACCAACTCTCGAAATTCTTCGAGATTCTGCCGCATGGTC
TTCTGTGTCGAATCAAGTCTCTCCCATGTTACCACACTTGCGCTCTTACT
GCCGTAACCATTAGTCTGATCATCATGACCATATTTAAAAGGTGCTTGAC
TGCACACTGGACGCCTTTCTTCACATGTAAAGGTATCTGAGGATGACCGG
GCCTTGGACACATGCTGAGGGGAGGCTGTCCGTCCGTCCCTCGATGTTGG
ATGACAGGAATGGCGTACAGAAGGCGATGAGGATAGCACTGAACTTGGCT
GTAATGATATCGGCTGGGAAACACCCTCGGTTGGCGTATTTTGAACGCTT
TCTGTCGATGGTTGCAAGTCCTCGTCGTCGAAAGGTTGCGCAGAAGAAAC
CTGCGAGTTTCCCACATCATTGCCACCTACGATACTATTTCGCAGCAGCT
CAGGCACTGCGATACACTTCAAGTTGGGAGATATTCGAAGACCGGGCTTA
TTAGGGTCTTCAAGTGTACCACCAGGACCCAACGGTTTCGTACTTTCAGT
TTGTAACATTGCCTTTTCT
back to top

Coding sequence (CDS) from alignment at CM002468.1:529161..529879-

>rna6448 ID=rna6448|Name=rna6448|organism=Nannochloropsis gaditana|type=CDS|length=312bp|location=Sequence derived from alignment at CM002468.1:529161..529879- (Nannochloropsis gaditana)
ATGACCGGGCCTTGGACACATGCTGAGGGGAGGCTGTCCGTCCGTCCCTC
GATGTTGGATGACAGGAATGGCGTACAGAAGGCGATGAGGATAGCACTGA
ACTTGGCTGTAATGATATCGGCTGGGAAACACCCTCGGTTGGCGTATTTT
GAACGCTTTCTGTCGATGGTTGCAAGTCCTCGTCGTCGAAAGGTTGCGCA
GAAGAAACCTGCGAGTTTCCCACATCATTGCCACCTACGATACTATTTCG
CAGCAGCTCAGGCACTGCGATACACTTCAAGTTGGGAGATATTCGAAGAC
CGGGCTTATTAG
back to top
Synonyms
Publications