rna6447, rna6447 (mRNA) Nannochloropsis gaditana

Overview
Namerna6447
Unique Namerna6447
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length207
Alignment locationCM002468.1:527847..528291 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100020g31.5370.mrna
Orig protein idgnl|cribi|Naga_100020g31.5370
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:527847..528291 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100020g31gene6229Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6447rna6447-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24237.1cds6431Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6447 ID=rna6447|Name=rna6447|organism=Nannochloropsis gaditana|type=mRNA|length=207bp
ATGAAAGACCGCGAGCAAGTTCAGCGTCAAATTTTGGTAAAACATAGACA
TGCACTTCGCAATCTGAAATCAGCACCCAATCGCCTGGCCAATAAATCCA
CAGCAAGAAATCCTGCGTTGTGTCGAGTCATGGCGTATTCTTTACCTGGA
TTGCCCAGGCCTACGATGAGAAGGTTTTTACTTCGAGGCACATTGTCAGC
TTGGTGA
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protein sequence of rna6447

>rna6447-protein ID=rna6447-protein|Name=rna6447|organism=Nannochloropsis gaditana|type=polypeptide|length=77bp
MVIYYRGALTRFITLSVLSSSIQSSMASTASINISSSTLRSDLLNWPTEP
VWRRRIWPMSNATSSTTTSTDETGSLK
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mRNA from alignment at CM002468.1:527847..528291-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6447 ID=rna6447|Name=rna6447|organism=Nannochloropsis gaditana|type=mRNA|length=445bp|location=Sequence derived from alignment at CM002468.1:527847..528291- (Nannochloropsis gaditana)
ATGGTGATTTATTATCGTGGAGCGTTGACACGGTTCATAACTTTATCGGT
GTTGTCATCTTCGATCCAGTCTTCGATGGCCTCCACAGCGTCGATCAACA
TATCATCAAGTACCTTGCGTTCTGACCTGCTAAACTGGCCCAGTACATGA
TCCACCATCGCACCTGGTGCTGCTGTATGCAAGGTATGATAAAATGCATT
TCCCAATGTGAGGCAGAGGTATAAGTTTAAGTTCTTAATTTCGTCACACT
GCTGTTTACTAGCACTCACCACCCCCAACGCCAATACGTAGACGATTGTA
GTCCTTGCACTTGAGGCAACTTTCTATACTTTTTAAGCCATTGTGGCCCC
CAGCCGAGCCTGTTTGGCGAAGACGAATCTGGCCTATGTCCAACGCCACC
TCGTCAACTACCACCAGCACAGACGAGACTGGCAGTTTAAAATAA
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Coding sequence (CDS) from alignment at CM002468.1:527847..528291-

>rna6447 ID=rna6447|Name=rna6447|organism=Nannochloropsis gaditana|type=CDS|length=468bp|location=Sequence derived from alignment at CM002468.1:527847..528291- (Nannochloropsis gaditana)
CCGAGCCTGTTTGGCGAAGACGAATCTGGCCTATGTCCAACGCCACCTCG
TCAACTACCACCAGCACAGACGAGACTGGCAGTTTAAAATAAATGGTGAT
TTATTATCGTGGAGCGTTGACACGGTTCATAACTTTATCGGTGTTGTCAT
CTTCGATCCAGTCTTCGATGGCCTCCACAGCGTCGATCAACATATCATCA
AGTACCTTGCGTTCTGACCTGCTAAACTGGCCCACCGAGCCTGTTTGGCG
AAGACGAATCTGGCCTATGTCCAACGCCACCTCGTCAACTACCACCAGCA
CAGACGAGACTGGCAGTTTAAAATAAATGGTGATTTATTATCGTGGAGCG
TTGACACGGTTCATAACTTTATCGGTGTTGTCATCTTCGATCCAGTCTTC
GATGGCCTCCACAGCGTCGATCAACATATCATCAAGTACCTTGCGTTCTG
ACCTGCTAAACTGGCCCA
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Synonyms
Publications