rna6446, rna6446 (mRNA) Nannochloropsis gaditana

Overview
Namerna6446
Unique Namerna6446
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length3907
Alignment locationCM002468.1:527483..527823 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100020g32.5396.mrna
Orig protein idgnl|cribi|Naga_100020g32.5396
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:527483..527823 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100020g32gene6228Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6446rna6446-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24263.1cds6430Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6446 ID=rna6446|Name=rna6446|organism=Nannochloropsis gaditana|type=mRNA|length=3907bp
ATAAGAGATCGATTTCTCGAGGGGATCGGCTAGCGGCTCGTACTCCCGTC
ATTCCCAGGGCTCAACTGAGAGGAGTAGCCCCTGTCAACCTTGTGCGTAG
TGCCGTCCCTACTGCTCGACTCGACAACCATGGGTACGAATCTGCGAATA
AAGCAGACAGCAGCTTTAAATCGAATGCTAAATTTCAACTCATCACTTGA
AGATAGAGAAGGTGGTGGTGGTAATGAATGGTCGGATCATTGGAAGGTGC
TGGTGTATGACCGGAAATGTCGGGACATCATTTCACCGCTACTCAATGTC
AGTAAGTTGAGGAAGCGAGGCGTGACCCTGCATTTGCTTTTGGAGTCCGA
GAGAGAGGAGATTCCCGACGTGCCGGCCGTGTATTTCATTGAGCCCACCG
AAGAAAATGTGGCACGGCTGGCCGAAGACCTCAAGAAACGTCTCTATTCC
GCCGTCTACTTAAATTTTGCCTCCAAGCTAGATCGGCCACTGATGGAGCG
TCTGGCCAAAAACGCAATAGCATCCAACTCGTACTCGATGGTCACCAAGG
TGGTAGACCAGTATCTGGACTTCGTCACCCTGGAGCCCAGCCTCTTCACC
CTCAACCAGGCCAACTCCTATTTGAGCTACAACAACCCAGGCGCATCCGA
AGCGGATATAGAAACCTACGCTCGCGCGGTTACCTACGGTGTCTTCTCCA
TGCTCGCGACCGTTGGCTCAGTCCCGGTCATTCGCTGCGCTGCAGGCGGG
CCTGCAGAGATGGTAGCGCGGCAATTGAATGATTTGATCTCAGAGCACTT
GTTGGGTAATTCGCCATTCTTTTTGCGAGGAACGGGAGGCTCCACTGCAG
CCTTCCACAGACCATTACTCATCATTTTCGATCGCAACGACGACCTTGTG
ACGGCGCTTCACCACACCTCCTCATACCAGGCCCTGGTAGACGACGTGCT
GCCGCACCGGTTGAATCGCGTCACAGTCGAAAGTCGTCAAGATGGCGAGA
GCGGAGGGGCCACAAAAAAACGGAATTACGATTTGGACGTGGAAAATGAC
CAGTTCTACTGTCGGTATGCCGGTGCTCTCTTTCCTGAGGCTATCCAGGC
CAACGGTGCCGAGCTTGCGGAGGTCACAAAGAAGGAGGAGGAAATCCGCT
CCAAAACCATCACTCAGTTAGGGAAAGGGGAGCGAGTAGATGATCCCACA
CAAGACGGCTCCGCAAAGGAATTGCTATCAGCCGTGGACAGCTTGCCTAA
GCTCCTAGAGCGAAAGAAGTCGTTGGAGGTGCACACTAACATTTTGCAAG
CTATCATGAGTGCGATAGCCGCGCGAGAAGTTCCCATATTTTTTGACGTG
GAGGAATCCATGGTCGCCTCTTCTCGCGCCGACAAGGCGACAGTGAAGGC
CCTCTTAGCGGACCCTGATAAGGGCTCGTTGCAGGACAAGCTCAGGCTTT
TGGCCGTCTTTACCCTCAGTTCTAAGGCCAGTACTGCCGACCTTCAAGAG
CTGAACGAGACCGTTCGTCAGGCGTTCGCCACTTCTCCTCCCTCCTCTTC
CAGCTTGGGTGCTTGGCCCTCGCATGAGGAGGTCGAGCTGGGTATCGGCG
CTGTTAATTATTTGCGTCGCCAGCGCGCCGTCCAACACCTTCCCGATCTC
ATTGAATCTGATAGCAACAAAGCTGGTGGTGGTGTGCGAGGAAGTCTTGG
AGCAGGCACAGCGATTCAGGGAGCCGCGGGAATTGGGGGGGTGGACAGTG
GCTACATGTCACATTTCATCAACAAGGCGCAGTCTCAGGCCACTGGTTTG
CTGGCCAAGGCAACCAACCTCCTCTCACGACGCAATTCTTTGTACGTGTC
CCGCGTGGTGGACAATCTATGTAACTTTAAGCCCAACACGGAGGACGAGT
CCTTCCTCTACCTGGACCCGAAAGTCAAGGGCTTGGACTCCAGTGCTGTT
AAGGGACGAGCGCCTTACAGAGAGGTCATCGTCTTTATGGTCGGGGGTGG
CTGCTATGCTGAATATCAGAATTTGCAGGAATACTCACGACAGCAATCTG
CCACGGCCCCTCGTCATGTCTTGTACGGCTGTACGGAGCTCCTAAATGCC
GAAGGCTTTTTGACACAACTAACCGAGTTAGGTAGAAAAAGCAAATGGTG
ATGTCAAGCAAGAGGAAGAGACATCTATCCTTAATACTTTTGATAGATCG
GGGTATCCGCAGAATTCAAAGCAAAGCTATTTGTGACTTCAAAGTACTTT
AAGGAAGGGGAAATGATAAATCCCATCCAATTGCATCCAAGGAGGTATGC
CGATCCATAAATAGCTTCGAGAACCTTTGGGATTTACCAAATGGCAAGGT
TGCTTCTATATGAATCTTATTTGTATATTTTGGAGACGAGATCCATTACG
TAAGGTGGGTTAAGGAGCTTGATAAGGTACATGCACGATAAGCATGGGCC
TTACGACAGACACCAACAGGACAAAACCTACTTGCGCCCATGGTGTTCAG
GCGATCAATATGTCATGAAACCATCGTACTTCATCTCATCTAGGCAATTT
TCACGGTCAGCAATAAGTTGAAACCAAATTTAGGACAACAGGTGATTCTT
AATGTCGATGTTTCAGCTGCTGGCTCCTGCTTCTCTCTTGAGAGCTGGAA
GCCACGTACCACCCTCGACGCGAAGGACCGCGGCAACCTCCCCATGTAGT
ACCCTCCCCAAATCTTTTGTAAACTCCTGCACTTATACTCTGCCACACCC
CATACTACCCCTCAGCTACTTCATGCAGGCTGATATAAACGTTTGCACTA
GAAGAAGAAGACAGCTCGCTTGGAAGGTTCTCTTGCTATTAGGGAGCGCC
TCTTTGATGATCCTTAGTCGACTACCCGTCTCAGAGGCATTCGTCGGAAA
TTACTTTTCATCCCGCCTTCCTGCTCTGTGGTTGAGTTCGACACGTGTGG
CGTTATGTGATAAATTGGCACTATCAGGGACTAGCTTTGGAAGAGAAGGG
CGGTCTTTCGGCCAACGCACGGCGCTAAGCTTGAATACCTTTGGAAACGG
CAGCGATAAGTCAGACGACACTCCGGTTCTTGAATCTCAAAACACGACTC
CATCGTCATCTCCGGCGCCTTTATCACCAAGCTTCAAGCATGCAGTGGCA
AAGAACCCCTTAAACAAACGCAACGAAGCCACCAAGTCGACGAATAGATC
GGCGCCTATCAAGAAAACTCACCAAGCTGACAATGTGCCTCGAAGTAAAA
ACCTTCTCATCGTAGGCCTGGGCAATCCAGGTAAAGAATACGCCATGACT
CGACACAACGCAGGATTTCTTGCTGTGGATTTATTGGCCAGGCGATTGGG
TGCTGATTTCAGATTGCGAAGTGCCTTTCAGGGAGAATACGGCTGTGTGG
CCTACAAGGGCAAGTCTGTTGGACTTCTCAAGCCCACTACTTTCATGAAT
AGAAGCGGGCAGTCTCTGCGTAAGGTCCTAGATTATTTTAAACTGCCAGT
CTCGTCTGTGCTGGTGGTAGTTGACGAGGTGGCGTTGGACATAGGCCAGA
TTCGTCTTCGCCAAACAGGCTCGGCTGGGGGCCACAATGGCTTAAAAAGT
ATAGAAAGTTGCCTCAAGTGCAAGGACTACAATCGTCTACGTATTGGCGT
TGGGGGTGCAGCACCAGGTGCGATGGTGGATCATGTACTGGGCCAGTTTA
GCAGGTCAGAACGCAAGGTACTTGATGATATGTTGATCGACGCTGTGGAG
GCCATCGAAGACTGGATCGAAGATGACAACACCGATAAAGTTATGAACCG
TGTCAACGCTCCACGATAATAAATCACCATACTTATCATGAGGCAAGAAA
AATTATGGCACTACGTGAGAAGGATTTGTAAAAAAAAGAAATGGGAGATG
ATTTACT
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protein sequence of rna6446

>rna6446-protein ID=rna6446-protein|Name=rna6446|organism=Nannochloropsis gaditana|type=polypeptide|length=68bp
MKDREQVQRQILVKHRHALRNLKSAPNRLANKSTARNPALCRVMAYSLPG
LPRPTMRRFLLRGTLSAW
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mRNA from alignment at CM002468.1:527483..527823-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6446 ID=rna6446|Name=rna6446|organism=Nannochloropsis gaditana|type=mRNA|length=341bp|location=Sequence derived from alignment at CM002468.1:527483..527823- (Nannochloropsis gaditana)
ATGAAAGACCGCGAGCAAGTTCAGCGTCAAATTTTGGTAAAACATAGACA
TGTTTTACGGTTTAATTTAGCAAGACATGACATACCTTACGCAGAGACTG
CCCGCTTCTATTCATGAAAGTAGTGGGCTTGAGAAGTCCAACAGACTTGC
CCTTGTAGGCCACACAGCCGTATTCTCCCTGAAAGGCACTTCGCAATCTG
AAATCAGCACCCAATCGCCTGGCCAATAAATCCACAGCAAGAAATCCTGC
GTTGTGTCGAGTCATGGCGTATTCTTTACCTGGATTGCCCAGGCCTACGA
TGAGAAGGTTTTTACTTCGAGGCACATTGTCAGCTTGGTGA
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Coding sequence (CDS) from alignment at CM002468.1:527483..527823-

>rna6446 ID=rna6446|Name=rna6446|organism=Nannochloropsis gaditana|type=CDS|length=414bp|location=Sequence derived from alignment at CM002468.1:527483..527823- (Nannochloropsis gaditana)
GCACTTCGCAATCTGAAATCAGCACCCAATCGCCTGGCCAATAAATCCAC
AGCAAGAAATCCTGCGTTGTGTCGAGTCATGGCGTATTCTTTACCTGGAT
TGCCCAGGCCTACGATGAGAAGGTTTTTACTTCGAGGCACATTGTCAGCT
TGGTGAATGAAAGACCGCGAGCAAGTTCAGCGTCAAATTTTGGTAAAACA
TAGACATGCACTTCGCAATCTGAAATCAGCACCCAATCGCCTGGCCAATA
AATCCACAGCAAGAAATCCTGCGTTGTGTCGAGTCATGGCGTATTCTTTA
CCTGGATTGCCCAGGCCTACGATGAGAAGGTTTTTACTTCGAGGCACATT
GTCAGCTTGGTGAATGAAAGACCGCGAGCAAGTTCAGCGTCAAATTTTGG
TAAAACATAGACAT
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Synonyms
Publications