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Properties
| Property Name | Value |
|---|
| Product | sec1 family domain containing 1 |
| Orig transcript id | gnl|cribi|Naga_100020g34.5403.mrna |
| Orig protein id | gnl|cribi|Naga_100020g34.5403 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002468.1 | supercontig | CM002468.1:523872..528368 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna6445 ID=rna6445|Name=rna6445|organism=Nannochloropsis gaditana|type=mRNA|length=750bp
AGGGGGACAAGGGCACGAGGTCAACGTCAACGACGGCGGAAGAGTTTCAA
GTCAAGGCATAAGAATCTCACGTCACACTAGATTAGGTCACTTCTAGTCC
AGTAGTACGGGCCTTTATGTCATCTTCAGCCGTAGACGCTGCAACTGCGA
GGTCGGACCCCCGCTGTGAGTTCCGACGGCTGGTAGACGCCAACATTTTG
AAATGCGTGGAATCCATGGGGCAGCTCATAAAGACAGCAAAGATGGGCTC
AACGCGGGAAGATGCGCACATGGACGCCAACCGTGTAACCATATTGACCG
GGACCATTCTACAAAGCAGTGAGCAACTATTGACACAGATCGAGCAATTG
AAACGCCTGCACGTGCTACAAGACTTTGATACCATAAATACGGAATTGGA
TCGAGACGTCATTTCTTTGGAAGCCAGGATTGAAGCACTGGACGCCGAGA
CGGAACATTGGAAGGCTGTTGTTCAGAGTGCTGCAAACAGGAAATTAGCC
TCCGCAGTAGATGGCTTGGCATGAGTCCTTATTCAATTACTATAGTCGGT
GCGAATGAAATCTAGGAGCCAAGGGTCGGCGAAGGGCAGAGAGAGAAATG
TACAGGCATCTGAGAGGCAAAAATGTGATTCAAATTGCTCCTTGGCATAT
TGCAAATGACTAGAAATTTTATGCGCGCATATGTAATTTATGCGACGGTC
GCAAAAATAGAAATTGACACAATCTTTGACCAAAAAATCGATCTAGGTCC back to topprotein sequence of rna6445 >rna6445-protein ID=rna6445-protein|Name=rna6445|organism=Nannochloropsis gaditana|type=polypeptide|length=673bp
MGTNLRIKQTAALNRMLNFNSSLEDREGGGGNEWSDHWKVLVYDRKCRDI
ISPLLNVSKLRKRGVTLHLLLESEREEIPDVPAVYFIEPTEENVARLAED
LKKRLYSAVYLNFASKLDRPLMERLAKNAIASNSYSMVTKVVDQYLDFVT
LEPSLFTLNQANSYLSYNNPGASEADIETYARAVTYGVFSMLATVGSVPV
IRCAAGGPAEMVARQLNDLISEHLLGNSPFFLRGTGGSTAAFHRPLLIIF
DRNDDLVTALHHTSSYQALVDDVLPHRLNRVTVESRQDGESGGATKKRNY
DLDVENDQFYCRYAGALFPEAIQANGAELAEVTKKEEEIRSKTITQLGKG
ERVDDPTQDGSAKELLSAVDSLPKLLERKKSLEVHTNILQAIMSAIAARE
VPIFFDVEESMVASSRADKATVKALLADPDKGSLQDKLRLLAVFTLSSKA
STADLQELNETVRQAFATSPPSSSSLGAWPSHEEVELGIGAVNYLRRQRA
VQHLPDLIESDSNKAGGGVRGSLGAGTAIQGAAGIGGVDSGYMSHFINKA
QSQATGLLAKATNLLSRRNSLYVSRVVDNLCNFKPNTEDESFLYLDPKVK
GLDSSAVKGRAPYREVIVFMVGGGCYAEYQNLQEYSRQQSATAPRHVLYG
CTELLNAEGFLTQLTELGRKSKW back to topmRNA from alignment at CM002468.1:523872..528368+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna6445 ID=rna6445|Name=rna6445|organism=Nannochloropsis gaditana|type=mRNA|length=4497bp|location=Sequence derived from alignment at CM002468.1:523872..528368+ (Nannochloropsis gaditana)
ATAAGAGATCGATTTCTCGAGGGGATCGGCTAGCGGCTCGTACTCCCGTC
ATTCCCAGGGCTCAACTGAGAGGAGTAGCCCCTGTCAACCTTGTGCGTAG
TGCCGTCCCTACTGCTCGACTCGACAACCATGGGTACGAATCTGCGAATA
AAGCAGACAGCAGCTTTAAATCGAATGCTAAATTTCAACTCATCACTTGA
AGAtagagaaggtggtggtggtaaTGAATGGTCGGATCATGTAAGTAACC
TTTCAGAGAACTGGGTGTCCCACGTGTGATGTTAAAATGGATAAGAAGGG
GCAAGTTATTTTCCTTCACCGATGAAATTTTCTGATTGTCCTTTCTTTCT
AGTCCGTGTCCAATTTTGGGTATGCGAATTGTGCCCGTGGCGTTGATGGC
ACTCAAACCAATTAAGTTTCCCGTATATTCGCACACTCACATTTTTGAAT
TCTTTGCCCTCTTGCAGTGGAAGGTGCTGGTGTATGACCGGAAATGTCGG
GACATCATTTCACCGCTACTCAATGTCAGTAAGTTGAGGAAGCGAGGCGT
GACCCTGCATTTGCTTTTGGAGtccgagagagaggagattCCCGACGTGC
CGGCCGTGTATTTCATTGAGCCCACCGAAGAAAATGTGGCACGGCTGGCC
GAAGACCTCAAGAAACGTCTCTATTCCGCCGTCTACTTAAATTTTGCCTC
CAAGCTAGATCGGCCACTGATGGAGCGTCTGGCCAAAAACGCAATAGCAT
CCAACTCGTACTCGATGGTCACCAAGGTGGTAGACCAGTATCTGGACTTC
GTCACCCTGGAGCCCAGCCTCTTCACCCTCAACCAGGCCAACTCCTATTT
GAGCTACAACAACCCAGGCGCATCCGAAGCGGATATAGAAACCTACGCTC
GCGCGGTTACCTACGGTGTCTTCTCCATGCTCGCGACCGTTGGCTCAGTC
CCGGTCATTCGCTGCGCTGCAGGCGGGCCTGCAGAGATGGTAGCGCGGCA
ATTGAATGATTTGATCTCAGAGCACTTGTTGGGTAATTCGCCATTCTTTT
TGCGAGGAACGGGAGGCTCCACTGCAGCCTTCCACAGACCATTACTCATC
ATTTTCGATCGCAACGACGACCTTGTGACGGCGCTTCACCACACCTCCTC
ATACCAGGCCCTGGTAGACGACGTGCTGCCGCACCGGTTGAATCGCGTCA
CAGTCGAAAGTCGTCAAGATGGCGAGAGCGGAGGGGCCACAAAAAAACGG
AATTACGATTTGGACGTGGAAAATGACCAGTTCTACTGTCGGTATGCCGG
TGCTCTCTTTCCTGAGGCTATCCAGGCCAACGGTGCCGAGCTTGCGGAGG
TcacaaagaaggaggaggaaatccgCTCCAAAACCATCACTCAGTtaggg
aaaggggagcgaGTAGATGATCCCACACAAGACGGCTCCGCAAAGGAATT
GCTATCAGCCGTGGACAGCTTGCCTAAGCTCCTAGAGCGAAAGAAGTCGT
TGGAGGTGCACACTAACATTTTGCAAGCTATCATGAGTGCGATAGCCGCG
CGAGAAGTTCCCATATTTTTTGACGTGGAGGAATCCATGGTCGCCTCTTC
TCGCGCCGACAAGGCGACAGTGAAGGCCCTCTTAGCGGACCCTGATAAGG
GCTCGTTGCAGGACAAGCTCAGGCTTTTGGCCGTCTTTACCCTCAGTTCT
AAGGCCAGTACTGCCGACCTTCAAGAGCTGAACGAGACCGTTCGTCAGGC
GTTCgccacttctcctccctcctcttccagcttggGTGCTTGGCCCTCGC
ATGAGGAGGTCGAGCTGGGTATCGGCGCTGTTAATTATTTGCGTCGCCAG
CGCGCCGTCCAACACCTTCCCGATCTCATTGAATCTGATAGCAACaaagc
tggtggtggtgtgCGAGGAAGTCTTGGAGCAGGCACAGCGATTCAGGGAG
CCGCGGGAATTGGGGGGGTGGACAGTGGCTACATGTCACATTTCATCAAC
AAGGCGCAGTCTCAGGCCACTGGTTTGCTGGCCAAGGCAACCAACCTCCT
CTCACGACGCAATTCTTTGTACGTGTCCCGCGTGGTGGACAATCTATGTA
ACTTTAAGCCCAACACGGAGGACGAGTCCTTCCTCTACCTGGACCCGAAA
GTCAAGGGCTTGGACTCCAGTGCTGTTAAGGGACGAGCGCCTTACAGAGA
GGTCATCGTCTTTATGGTCGGGGGTGGCTGCTATGCTGAATATCAGAATT
TGCAGGAATACTCACGACAGCAATCTGCCACGGCCCCTCGTCATGTCTTG
TACGGCTGTACGGAGCTCCTAAATGCCGAAGGCTTTTTGACACAACTAAC
CGAGTTAGGTAGAAAAAGCAAATGGTGATGtcaagcaagaggaagagaca
tCTATCCTTAATACTTTTGATAGATCGGGGTATCCGCAGAATTCAAAGCA
AAGCTATTTGTGACTTCAAAGTACTttaaggaaggggaaatgaTAAATCC
CATCCAATTGCATCCAAGGAGGTATGCCGATCCATAAATAGCTTCGAGAA
CCTTTGGGATTTACCAAATGGCAAGGTTGCTTCTATATGAATCTTATTTG
TATATTTTGGAGACGAGATCCATTACGTAAGGTGGGTTAAGGAGCTTGAT
AAGGTACATGCACGATAAGCATGGGCCTTACGACAGACACCAACAGGACA
AAACCTACTTGCGCCCATGGTGTTCAGGCGATCAATATGTCATGAAACCA
TCGTACTTCATCTCATCTAGGCAATTTTCACGGTCAGCAATAAGTTGAAA
CCAAATTTAGGACAACAGGTGATTCTTAATGTCGATGTTTCAGCTGCTGG
CTCCTGCTTCTCTCTTGAGAGCTGGAAGCCACGTACCACCCTCGACGCGA
AGGACCGCGGCAACCTCCCCATGTAGTACCCTCCCCAAATCTTTTGTAAA
CTCCTGCACTTATACTCTGCCACACCCCATACTACCCCTCAGCTACTTCA
TGCAGGCTGATATAAACGTTTGCActagaagaagaagacagctCGCTTGG
AAGGTTCTCTTGCTATTAGGGAGCGCCTCTTTGATGATCCTTAGTCGACT
ACCCGTCTCAGAGGCATTCGTCGGAAATTACTTTTCATCCCGCCTTCCTG
CTCTGTGGTTGAGTTCGACACGTGTGGCGTTATGTGATAAATTGGCACTA
TCAGGGACTAGCtttggaagagaagggcggtCTTTCGGGTGAGTATGTGG
GGTAAGGGTTGTAGCAATCAGTATACGATGGAAAATACCGTATGTTTTGA
AAGACTCAACGAGATGCGTATGGCAACATTGTTCTACATGAGTCCAACAG
CAATTGTGACTAGGTTTTCTCACCAGATGTTTGTATTCATTCATTATCAA
CTAGCCAACGCACGGCGCTAAGCTTGAATACCTTTGGAAACGGCAGCGAT
AAGTCAGACGACACTCCGGTTCTTGAATCTCAAAACACGACTCCATCGTC
ATCTCCGGCGCCTTTATCACCAAGCTTCAAGCATGCAGTGGCAAAGAACC
CCTTAAACAAACGCAACGAAGCCACCAAGTCGACGAATAGATCGGCGCCT
ATCAAGAAAACTCACCAAGCTGACAATGTGCCTCGAAGTAAAAACCTTCT
CATCGTAGGCCTGGGCAATCCAGGTAAAGAATACGCCATGACTCGACACA
ACGCAGGATTTCTTGCTGTGGATTTATTGGCCAGGCGATTGGGTGCTGAT
TTCAGATTGCGAAGTGCCTTTCAGGGAGAATACGGCTGTGTGGCCTACAA
GGGCAAGTCTGTTGGACTTCTCAAGCCCACTACTTTCATGAATAGAAGCG
GGCAGTCTCTGCGTAAGGTATGTCATGTCTTGCTAAATTAAACCGTAAAA
CATGTCTATGTTTTACCAAAATTTGACGCTGAACTTGCTCGCGGTCTTTC
ATGTCGTCCGATATCAGGTCCTAGATTATTTTAAACTGCCAGTCTCGTCT
GTGCTGGTGGTAGTTGACGAGGTGGCGTTGGACATAGGCCAGATTCGTCT
TCGCCAAACAGGCTCGGCTGGGGGCCACAATGGCTTAAAAAGTATAGAAA
GTTGCCTCAAGTGCAAGGACTACAATCGTCTACGTATTGGCGTTGGGGGT
GGTGAGTGCTAGTAAACAGCAGTGTGACGAAATTAAGAACTTAAACTTAT
ACCTCTGCCTCACATTGGGAAATGCATTTTATCATACCTTGCATACAGCA
GCACCAGGTGCGATGGTGGATCATGTACTGGGCCAGTTTAGCAGGTCAGA
ACGCAAGGTACTTGATGATATGTTGATCGACGCTGTGGAGGCCATCGAAG
ACTGGATCGAAGATGACAACACCGATAAAGTTATGAACCGTGTCAACGCT
CCACGATAATAAATCACCATACTTATCATGAGGCAAGAAAAATTATGGCA
CTACGTGAGAAGGATTTGtaaaaaaaagaaatggGAGATGATTTACT back to topCoding sequence (CDS) from alignment at CM002468.1:523872..528368+ >rna6445 ID=rna6445|Name=rna6445|organism=Nannochloropsis gaditana|type=CDS|length=4044bp|location=Sequence derived from alignment at CM002468.1:523872..528368+ (Nannochloropsis gaditana)
ATGGGTACGAATCTGCGAATAAAGCAGACAGCAGCTTTAAATCGAATGCT
AAATTTCAACTCATCACTTGAAGAtagagaaggtggtggtggtaaTGAAT
GGTCGGATCATTGGAAGGTGCTGGTGTATGACCGGAAATGTCGGGACATC
ATTTCACCGCTACTCAATGTCAGTAAGTTGAGGAAGCGAGGCGTGACCCT
GCATTTGCTTTTGGAGtccgagagagaggagattCCCGACGTGCCGGCCG
TGTATTTCATTGAGCCCACCGAAGAAAATGTGGCACGGCTGGCCGAAGAC
CTCAAGAAACGTCTCTATTCCGCCGTCTACTTAAATTTTGCCTCCAAGCT
AGATCGGCCACTGATGGAGCGTCTGGCCAAAAACGCAATAGCATCCAACT
CGTACTCGATGGTCACCAAGGTGGTAGACCAGTATCTGGACTTCGTCACC
CTGGAGCCCAGCCTCTTCACCCTCAACCAGGCCAACTCCTATTTGAGCTA
CAACAACCCAGGCGCATCCGAAGCGGATATAGAAACCTACGCTCGCGCGG
TTACCTACGGTGTCTTCTCCATGCTCGCGACCGTTGGCTCAGTCCCGGTC
ATTCGCTGCGCTGCAGGCGGGCCTGCAGAGATGGTAGCGCGGCAATTGAA
TGATTTGATCTCAGAGCACTTGTTGGGTAATTCGCCATTCTTTTTGCGAG
GAACGGGAGGCTCCACTGCAGCCTTCCACAGACCATTACTCATCATTTTC
GATCGCAACGACGACCTTGTGACGGCGCTTCACCACACCTCCTCATACCA
GGCCCTGGTAGACGACGTGCTGCCGCACCGGTTGAATCGCGTCACAGTCG
AAAGTCGTCAAGATGGCGAGAGCGGAGGGGCCACAAAAAAACGGAATTAC
GATTTGGACGTGGAAAATGACCAGTTCTACTGTCGGTATGCCGGTGCTCT
CTTTCCTGAGGCTATCCAGGCCAACGGTGCCGAGCTTGCGGAGGTcacaa
agaaggaggaggaaatccgCTCCAAAACCATCACTCAGTtagggaaaggg
gagcgaGTAGATGATCCCACACAAGACGGCTCCGCAAAGGAATTGCTATC
AGCCGTGGACAGCTTGCCTAAGCTCCTAGAGCGAAAGAAGTCGTTGGAGG
TGCACACTAACATTTTGCAAGCTATCATGAGTGCGATAGCCGCGCGAGAA
GTTCCCATATTTTTTGACGTGGAGGAATCCATGGTCGCCTCTTCTCGCGC
CGACAAGGCGACAGTGAAGGCCCTCTTAGCGGACCCTGATAAGGGCTCGT
TGCAGGACAAGCTCAGGCTTTTGGCCGTCTTTACCCTCAGTTCTAAGGCC
AGTACTGCCGACCTTCAAGAGCTGAACGAGACCGTTCGTCAGGCGTTCgc
cacttctcctccctcctcttccagcttggGTGCTTGGCCCTCGCATGAGG
AGGTCGAGCTGGGTATCGGCGCTGTTAATTATTTGCGTCGCCAGCGCGCC
GTCCAACACCTTCCCGATCTCATTGAATCTGATAGCAACaaagctggtgg
tggtgtgCGAGGAAGTCTTGGAGCAGGCACAGCGATTCAGGGAGCCGCGG
GAATTGGGGGGGTGGACAGTGGCTACATGTCACATTTCATCAACAAGGCG
CAGTCTCAGGCCACTGGTTTGCTGGCCAAGGCAACCAACCTCCTCTCACG
ACGCAATTCTTTGTACGTGTCCCGCGTGGTGGACAATCTATGTAACTTTA
AGCCCAACACGGAGGACGAGTCCTTCCTCTACCTGGACCCGAAAGTCAAG
GGCTTGGACTCCAGTGCTGTTAAGGGACGAGCGCCTTACAGAGAGGTCAT
CGTCTTTATGGTCGGGGGTGGCTGCTATGCTGAATATCAGAATTTGCAGG
AATACTCACGACAGCAATCTGCCACGGCCCCTCGTCATGTCTTGTACGGC
TGTACGGAGCTCCTAAATGCCGAAGGCTTTTTGACACAACTAACCGAGTT
AGGTAGAAAAAGCAAATGGTGAATGGGTACGAATCTGCGAATAAAGCAGA
CAGCAGCTTTAAATCGAATGCTAAATTTCAACTCATCACTTGAAGAtaga
gaaggtggtggtggtaaTGAATGGTCGGATCATTGGAAGGTGCTGGTGTA
TGACCGGAAATGTCGGGACATCATTTCACCGCTACTCAATGTCAGTAAGT
TGAGGAAGCGAGGCGTGACCCTGCATTTGCTTTTGGAGtccgagagagag
gagattCCCGACGTGCCGGCCGTGTATTTCATTGAGCCCACCGAAGAAAA
TGTGGCACGGCTGGCCGAAGACCTCAAGAAACGTCTCTATTCCGCCGTCT
ACTTAAATTTTGCCTCCAAGCTAGATCGGCCACTGATGGAGCGTCTGGCC
AAAAACGCAATAGCATCCAACTCGTACTCGATGGTCACCAAGGTGGTAGA
CCAGTATCTGGACTTCGTCACCCTGGAGCCCAGCCTCTTCACCCTCAACC
AGGCCAACTCCTATTTGAGCTACAACAACCCAGGCGCATCCGAAGCGGAT
ATAGAAACCTACGCTCGCGCGGTTACCTACGGTGTCTTCTCCATGCTCGC
GACCGTTGGCTCAGTCCCGGTCATTCGCTGCGCTGCAGGCGGGCCTGCAG
AGATGGTAGCGCGGCAATTGAATGATTTGATCTCAGAGCACTTGTTGGGT
AATTCGCCATTCTTTTTGCGAGGAACGGGAGGCTCCACTGCAGCCTTCCA
CAGACCATTACTCATCATTTTCGATCGCAACGACGACCTTGTGACGGCGC
TTCACCACACCTCCTCATACCAGGCCCTGGTAGACGACGTGCTGCCGCAC
CGGTTGAATCGCGTCACAGTCGAAAGTCGTCAAGATGGCGAGAGCGGAGG
GGCCACAAAAAAACGGAATTACGATTTGGACGTGGAAAATGACCAGTTCT
ACTGTCGGTATGCCGGTGCTCTCTTTCCTGAGGCTATCCAGGCCAACGGT
GCCGAGCTTGCGGAGGTcacaaagaaggaggaggaaatccgCTCCAAAAC
CATCACTCAGTtagggaaaggggagcgaGTAGATGATCCCACACAAGACG
GCTCCGCAAAGGAATTGCTATCAGCCGTGGACAGCTTGCCTAAGCTCCTA
GAGCGAAAGAAGTCGTTGGAGGTGCACACTAACATTTTGCAAGCTATCAT
GAGTGCGATAGCCGCGCGAGAAGTTCCCATATTTTTTGACGTGGAGGAAT
CCATGGTCGCCTCTTCTCGCGCCGACAAGGCGACAGTGAAGGCCCTCTTA
GCGGACCCTGATAAGGGCTCGTTGCAGGACAAGCTCAGGCTTTTGGCCGT
CTTTACCCTCAGTTCTAAGGCCAGTACTGCCGACCTTCAAGAGCTGAACG
AGACCGTTCGTCAGGCGTTCgccacttctcctccctcctcttccagcttg
gGTGCTTGGCCCTCGCATGAGGAGGTCGAGCTGGGTATCGGCGCTGTTAA
TTATTTGCGTCGCCAGCGCGCCGTCCAACACCTTCCCGATCTCATTGAAT
CTGATAGCAACaaagctggtggtggtgtgCGAGGAAGTCTTGGAGCAGGC
ACAGCGATTCAGGGAGCCGCGGGAATTGGGGGGGTGGACAGTGGCTACAT
GTCACATTTCATCAACAAGGCGCAGTCTCAGGCCACTGGTTTGCTGGCCA
AGGCAACCAACCTCCTCTCACGACGCAATTCTTTGTACGTGTCCCGCGTG
GTGGACAATCTATGTAACTTTAAGCCCAACACGGAGGACGAGTCCTTCCT
CTACCTGGACCCGAAAGTCAAGGGCTTGGACTCCAGTGCTGTTAAGGGAC
GAGCGCCTTACAGAGAGGTCATCGTCTTTATGGTCGGGGGTGGCTGCTAT
GCTGAATATCAGAATTTGCAGGAATACTCACGACAGCAATCTGCCACGGC
CCCTCGTCATGTCTTGTACGGCTGTACGGAGCTCCTAAATGCCGAAGGCT
TTTTGACACAACTAACCGAGTTAGGTAGAAAAAGCAAATGGTGA back to top
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