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Properties
| Property Name | Value |
|---|
| Product | pseudouridine synthase |
| Orig transcript id | gnl|cribi|Naga_100020g38.5395.mrna |
| Orig protein id | gnl|cribi|Naga_100020g38.5395 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002468.1 | supercontig | CM002468.1:518086..519039 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna6441 ID=rna6441|Name=rna6441|organism=Nannochloropsis gaditana|type=mRNA|length=1638bp
ATGCGGAAGCACAAGAGTAAAGAAAAGATGGTTGCGGGGTGTTTGCAGTC
GGAGGGGCTGTCTACACTCCAACACAAGCTTCTGGCTAAGCAAGTCGCAA
ACATCGAAAGTGTAAAAGACATTTCTTATTGTTTTGATGATGATAGCCAC
AACGGCTGTATAGCAGAAAGCGCGATGTCTTCTGCTCCTCATCCGTCACT
GCTTCGCAGCCACGTGACATTGCCTGCTACGATTCGCTACGGCCTTCCGC
TTCTCTTGATAGGTAACACAGCTCTCTTGCTATATTCAAACCTTACGCTT
GGTGCCTCTGTGTATGCGAGGGTCTACGACGGGCAAGGCAGGACCATGGA
GCTGCCTGTCCTTTACAACGTCAGCTTGGCGGGGTCCATCAAAGACATGT
GGCAGAGCGGGGCTTATTGGATGGCAACTCTCATAGCAATTTGCAGTGGT
GCTTGGCCACACGTCAAGCTTTTATTGTGCCTCTTATGCTGGACTGTGGG
TGAGAAGCATCTTTCACCCTGTACAAGACGGCGCGCCTTGAAAGTCACGT
ACTTTCTGCAAAAATTCAGTCACGTCGAGACCATCACCTTAGTCATCCTC
ATGACCGCATTCAGTTTTACCGCCCGGCTTCCCAATCATGAGAGTTGGGG
CGTGTGGACTTATGTTGCACCGCAGCCGGGATTTTTTGCATTTCTCGGGG
GCCTAATTCTGTCCATGTTCCTAAGCCGCGTGACCCTTTATTACGACCAA
GCCTGGCATGCTGCGCTAAGCTGTGAAGAGAGCTCCGCTCCCTCTACGCC
AATGGAATGCGATGAACAAGCCCATGGGAGCAGTTCTGAAGACTGTGGTA
AGGCACGATGTATGATTAACGAACGCTTCCTGTCAAACAAAGTGCGCTTC
GACTGCTGCGGCAGCGATGAACCTTTGACCAGCGTGGGAGGCAGCTTGGA
GCATTCCATGTGGCGGGAGATCCCAACGGTGTGTGGTGTGCTCTGCATAG
GAGTATGCCTCATCATGGGGCTTGTCCTGCCCGCTTTTTCCTTTCAGTTT
AAGGGTTTGACTGGATGGATACTGGACAACGTCACCCAGGACTCGCCTGA
TTCGTCGGCATCCCTGCGCACTATGTCGGCCCTTTCGCTTGGTGAGCAAA
TTCCTGCATCATCAGAAAGCAAAGGCATAGGCATATTCTTCTTACAGGCG
TCATTCTTTTTCTTTGTGGTCGGTGCACCAATAAGCTGCCTAACGTTACT
TGTTGCTCTGCTCATACTCAAGCCGAGAGAGTCTCGAAAGTTGGTAATGC
CTGCAGAAATACTGTACGCGTGGAGTGCTCCAGATGTATTGTTCATAAGC
ATGGTGGTATCCACATGGGAGATGTACCTCTTCGTGCGCTTTGTGATAGG
AGACCGTTGCGACGCCGTCAACGCGCTCCTCCGGGAAATAATGGATGACC
AGTTGGCGGGCGACGACAAATGTTTTGACGTGGTCACTACTTTAAAGCCC
GGCTGTTTCATCCTGGGAGTTAGCTCCTTACTATTTTTGGTAGCCGGATT
CTTGGTCATGAGGAAGGTCAAGCGCATGGTAAAAGTGCATGCTGATGTAT
TTCCACACAGAGATACGGAAAGATTGCAGCGGTGTTGA back to topprotein sequence of rna6441 >rna6441-protein ID=rna6441-protein|Name=rna6441|organism=Nannochloropsis gaditana|type=polypeptide|length=317bp
MSLVFQSSLLSKQKGILLKFPRYKGAHSRLDRQLHTLYRDAHIIVISKAA
GILSQPDERSIGGATDLLGLVRAYIKKSAGKQNGAYVGLVHRLDRNVTGC
MVFALRSKAAARLSYDFKNRLVRKMYVAMVVGTLSGEGLLTNSLVHGRNN
VARVMNRVNESLQPPSVPSNKKLEQAQLYFKSLGTFYHPRGGAQTLLQIQ
LISGKKHQIRAQLSHLGHPIVGDVKYKAPTHFRDKFMALHCYSLTLRHPS
QGSRIVKELTSGEGVCGDPKGRKLDHEKRQIMDFYAPLPESWQARFGADV
VRCVHELPRDIGDIALA back to topmRNA from alignment at CM002468.1:518086..519039- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >rna6441 ID=rna6441|Name=rna6441|organism=Nannochloropsis gaditana|type=mRNA|length=954bp|location=Sequence derived from alignment at CM002468.1:518086..519039- (Nannochloropsis gaditana)
ATGTCACTCGTATTTCAGTCTTCTTTATTATCTAAACAAAAAGGCATCTT
ACTGAAGTTCCCCCGCTACAAGGGTGCACATTCTCGCTTAGACCGTCAGT
TACATACCCTGTACCGTGATGCCCATATCATTGTCATTAGTAAGGCCGCA
GGGATCCTTTCGCAGCCCGACGAGAGAAGCATTGGTGGGGCGACTGACCT
ACTAGGTCTTGTGCGAGCATACATCAAAAAATCTGCAGGGAAACAGAATG
GTGCTTACGTGGGCCTGGTGCATCGTCTCGATAGGAATGTAACAGGTTGC
ATGGTCTTCGCGTTGCGATCAAAAGCGGCCGCACGCTTATCTTATGACTT
CAAAAATAGGTTGGTTCGGAAGATGTACGTGGCAATGGTAGTGGGGACAC
TGTCTGGCGAGGGTTTGCTCACAAACTCCCTCGTGCACGGCCGAAACAAC
GTGGCTCGCGTGATGAATCGCGTGAATGAGTCATTGCAACCGCCAAGCGT
GCCATCGAACAAGAAATTGGAGCAAGCACAATTATATTTCAAATCTCTGG
GCACTTTCTACCATCCACGGGGGGGGGCACAAACATTGCTTCAAATACAA
CTTATCTCAGGAAAAAAACATCAGATCCGAGCACAACTATCCCATCTCGG
CCATCCAATCGTAGGCGATGTCAAATACAAGGCTCCTACTCACTTTCGGG
ACAAATTTATGGCCTTGCATTGCTACAGTCTTACCCTCCGCCATCCATCG
CAGGGAAGTAGGATTGTGAAAGAGCTAACAAGCGGCGAAGGTGTTTGTGG
GGACCCCAAGGGGCGAAAACTGGACCACGAGAAACGTCAGATAATGGATT
TTTATGCCCCTCTGCCCGAATCGTGGCAAGCGAGGTTCGGAGCGGACGTA
GTTAGATGTGTGCACGAGTTGCCAAGGGACATTGGTGATATCGCGCTTGC
ATAA back to topCoding sequence (CDS) from alignment at CM002468.1:518086..519039- >rna6441 ID=rna6441|Name=rna6441|organism=Nannochloropsis gaditana|type=CDS|length=954bp|location=Sequence derived from alignment at CM002468.1:518086..519039- (Nannochloropsis gaditana)
ATGTCACTCGTATTTCAGTCTTCTTTATTATCTAAACAAAAAGGCATCTT
ACTGAAGTTCCCCCGCTACAAGGGTGCACATTCTCGCTTAGACCGTCAGT
TACATACCCTGTACCGTGATGCCCATATCATTGTCATTAGTAAGGCCGCA
GGGATCCTTTCGCAGCCCGACGAGAGAAGCATTGGTGGGGCGACTGACCT
ACTAGGTCTTGTGCGAGCATACATCAAAAAATCTGCAGGGAAACAGAATG
GTGCTTACGTGGGCCTGGTGCATCGTCTCGATAGGAATGTAACAGGTTGC
ATGGTCTTCGCGTTGCGATCAAAAGCGGCCGCACGCTTATCTTATGACTT
CAAAAATAGGTTGGTTCGGAAGATGTACGTGGCAATGGTAGTGGGGACAC
TGTCTGGCGAGGGTTTGCTCACAAACTCCCTCGTGCACGGCCGAAACAAC
GTGGCTCGCGTGATGAATCGCGTGAATGAGTCATTGCAACCGCCAAGCGT
GCCATCGAACAAGAAATTGGAGCAAGCACAATTATATTTCAAATCTCTGG
GCACTTTCTACCATCCACGGGGGGGGGCACAAACATTGCTTCAAATACAA
CTTATCTCAGGAAAAAAACATCAGATCCGAGCACAACTATCCCATCTCGG
CCATCCAATCGTAGGCGATGTCAAATACAAGGCTCCTACTCACTTTCGGG
ACAAATTTATGGCCTTGCATTGCTACAGTCTTACCCTCCGCCATCCATCG
CAGGGAAGTAGGATTGTGAAAGAGCTAACAAGCGGCGAAGGTGTTTGTGG
GGACCCCAAGGGGCGAAAACTGGACCACGAGAAACGTCAGATAATGGATT
TTTATGCCCCTCTGCCCGAATCGTGGCAAGCGAGGTTCGGAGCGGACGTA
GTTAGATGTGTGCACGAGTTGCCAAGGGACATTGGTGATATCGCGCTTGC
ATAA back to top
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