rna6439, rna6439 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6439
Unique Name	rna6439
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1596
Alignment location	CM002468.1:514229..515591 +

Link to JBrowse

Properties


Property Name	Value
Product	serine acetyltransferase
Orig transcript id	gnl\|cribi\|Naga_100020g40.5385.mrna
Orig protein id	gnl\|cribi\|Naga_100020g40.5385
Gene	SATase
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002468.1	supercontig	CM002468.1:514229..515591 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
SATase	gene6221	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6439	rna6439-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24252.1	cds6423	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002468.1:514229..515591+
coding sequence from alignment at CM002468.1:514229..515591+

mRNA sequence

>rna6439 ID=rna6439|Name=rna6439|organism=Nannochloropsis gaditana|type=mRNA|length=1596bp
TTTGCCGCCCGCGACAACGAGGCCCGTGTTTCTCCTTTCCACAACACAGT
GGGAGGAGGCATATGAAAAAAGGCCATTACGTGGCCTAACGCAAAAAATA
TAAGGAGAAAATGCCACGTTTTCATCGAGAGGGTCATTTGACGACAAGTC
TTCAGGTGATCGGCGTCGGAGCATAAGCCGCGCGTCTGTCCACTAGCCTG
TAGAACATGGTTATGGACAAGAGATGCGTCAAAATTTGTCCAGATTCCTC
AAATATCACCTCAATTATCTCATAAACGGAAATCTAAGAACACACTCATT
TCTTTTGGTTGTTTCTCTATGCGTGTTTCATCAAGCCGCACGTCTAAGCG
CTGGTGGGACGCATTTCTCCCCCTGAAGCTCTCCTTGCTGCCTCCTCGCC
TTCCGTAACAGCGACATTCCATATCGCACAAACCATCCAACACGACCTCA
CCAACTTCACCAGCTAGGCCGTAATTCTATCCTCATCACCATAGGTAGGG
TCATTTTTATTTTATTTTTTTCCAGGCAGGAAGGGACGGATCAGGAAGTG
CTCCATTGTCGTCTGGTACAAGGCTGGGAACTGGCTTCGTGTCATTGAAC
ACTCCCACCGCCAGCTTGTCCCTCCATTCCGCCAATACCATGTTTTACCT
GAAAACACTGGAGAAAGACTTCATGCTGGAGCCGAAAGACCTGGGCCCGG
GTCTCAAGGAAACCATCAAGTACGTACAGGACTCAATACCTACGCCTTAA
AGCAGGAACAGTTCACCCTGGGCTCGTATTCGGACGTGTGCGAGTAAACG
GAGATAAAAGGGCTGGCCATAGGCATTGGGATGCGGCTGGTCTTCGTCAC
TAGCTGTGCATCTGTCGGGACGAGCAATTATTTTCTTCCCGCAAGCTGTC
AGCCACGGCGTCAGAACTATCGGACCTTGCTTTATGCTCTTGAAAATGCC
TGACATTTCATTCTACCCAACCCAGGCGGCGCCTCACTCAAATGATGGAG
GGCACGTTGGAGCCAGATCTCGGCTTCGTGATAGCCTTGGTGGCCCTGGA
TGATCAGCACATTCGGCCAGGAAAGATAGAGTACGAGACTGGAGAAGTGG
AGGTGTGGGTAAAGTTTACCGTCATGCTCTTCCGACCCTTTCGGAACGAG
ATCTTAGACGCCCAAGTGACCACAGTGACGGACATGGGCTTCTTCGCGGA
CGCAGGACCGGTGCAGGGAATATACGTAAACAAGCATCAGATGCCTCAGG
ATTACGGCTTCGATGCACAGGACAATGTTTGGCGCACATCTGACATGGAA
GTGGAGATCAGGCCGGGCTGCGGGGTGCGGATGCGGGTAGTCGGCGTGGA
CATCACGCCCGGGAGGATGAACGTCGTGGGCTCTATCATGGATGATTACA
CCGGCCTTATTAGCGGGGAGACAGACTAGGCAGGTTCTTCAAGACACAAC
AAAGCATGCATCTTCACATTCTTATTGAACGTGGAATCAAGACACGCTCA
GTGTCACTTTATATTATGTATACTAAAAAGGAGGTCAATCATGCACGCCC
TTTAAAGCCGAAAGAAGATAAAAGACGATTACGATAACCCTAACCC

protein sequence of rna6439

>rna6439-protein ID=rna6439-protein|Name=rna6439|organism=Nannochloropsis gaditana|type=polypeptide|length=369bp
MTLSMKTWHFLLIFFALGHVMAFFHMPPPTVLWKGETRASLSRAANEEIG
TEGGKEAEQRAPVKDTVSSGSSGASFSMELQSKSPSRIQDLVRLLHASED
PLWELVKFEAETSAAQDEKAAGLIQQRVLDRGGIQSAARDFLATKLQGSN
LPATKMKLLIDSVFQEEPGIVQDLREDLLVATMRDSSIPSLLAAFLFSKG
YHAVATYRIAHSIYSQGRESLARYLQSLNSELFGADIHPACCVGRALYLS
SGTCVVIGETAKLGDDVIIMQGVTLGGNGKERGDRHPKLGSGVLVAAGST
VLGNIPIGDGVIISAGSVVLRPVPEYTRCSGVPAKVTSVLRKHKENVLSI
QGMGQSHFVEIFQDPQRGG

mRNA from alignment at CM002468.1:514229..515591+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6439 ID=rna6439|Name=rna6439|organism=Nannochloropsis gaditana|type=mRNA|length=1363bp|location=Sequence derived from alignment at CM002468.1:514229..515591+ (Nannochloropsis gaditana)
ATGACCCTCTCGATGAAAACGTGGCATTTTCTCCTTATATTTTTTGCGTT
AGGCCACGTAATGGCCTTTTTTCAtatgcctcctcccactgtGTTGTGGA
AAGGAGAAACACGGGCCTCGTTGTCGCGGGCGGCAAATGAAGAGATTGGc
acagaggggggaaaagaggcggagCAGCGTGCGCCAGTCAAGGATACCGT
GTCTTCAGGGTCCAGCGGCGCCTCATTCTCAATGGAGCTGCAAAGTAAGT
CTCCGTCTCGGATTCAAGACTTGGTACGACTTCTGCATGCATCGGAAGAC
CCGCTTTGGGAACTCGTCAAGTTTGAAGCCGAGACCTCCGCGGCCCAGGA
CGAGAAGGCGGCCGGCCTAATTCAGCAACGGGTGCTAGATCGAGGCGGCA
TCCAATCTGCAGCACGAGACTTCCTGGCCACAAAATTACAAGGCTCCAAC
TTGCCGGTATGCGGTTGTAGAAGACAGACCGTGCAGGGGGACTTATTCGC
AACGTCTCCACCGTTGTGCTGTTAAAATCTATACTTTTCTGTTCCGTCAC
TGAGAAGACATACGACTCACGCTCGATTTCTTTTTGCAACCTAGGCGACG
AAAATGAAGCTTTTGATAGACTCGGTCTTTCAGGAGGAGCCAGGCATAGT
GCAGGATCTCCGCGAGGACCTCCTTGTGGCCACCATGCGGGACTCGagca
ttccctcccttctcgccgccttcctcttctctaaAGGCTACCACGCCGTC
GCCACCTACCGCATTGCCCACAGCATATACAGCCAGGGTCGGGAGTCTCT
TGCTCGCTACCTGCAGTCCCTGAATTCTGAGCTCTTTGGGGCCGATATCC
ATCCAGCTTGCTGCGTGGGCCGGGTGCGTGCCACTGTCGTGTGACATGTT
CTGAAATAGTTCGATCTTGATGTTTTGGAACAACAACCTAATATCAATCC
CTGTGAATCGACGCGATTCTCAATCCATGATTATATAGGCACTCTACCTG
TCTAGCGGGACATGCGTGGTCATAGGAGAGACAGCCAAGCTCGGCGACGA
TGTCATAATCATGCAGGGCGTCACACTGGGGGGTAATGGCAAAGAGCGTG
GGGACCGACACCCAAAACTAGGGAGCGgcgtgctggtggcggcAGGCTCT
ACAGTGCTGGGCAATATCCCGATAGGGGATGGCGTCATTATCTCCGCAGG
TTCGGTGGTACTACGGCCCGTACCGGAGTATACTCGATGCAGCGGAGTCC
CGGCGAAAGTAACTTCGGTCCTTCGTAAGCATAAAGAGAATGTGTTGAGC
ATCCAAGGGATGGGTCAAAGCCATTTTGTTGAAATTTTTCAGGACCCaca
aaggggagggtga

Coding sequence (CDS) from alignment at CM002468.1:514229..515591+

>rna6439 ID=rna6439|Name=rna6439|organism=Nannochloropsis gaditana|type=CDS|length=3330bp|location=Sequence derived from alignment at CM002468.1:514229..515591+ (Nannochloropsis gaditana)
ATGACCCTCTCGATGAAAACGTGGCATTTTCTCCTTATATTTTTTGCGTT
AGGCCACGTAATGGCCTTTTTTCAtatgcctcctcccactgtGTTGTGGA
AAGGAGAAACACGGGCCTCGTTGTCGCGGGCGGCAAATGAAGAGATTGGc
acagaggggggaaaagaggcggagCAGCGTGCGCCAGTCAAGGATACCGT
GTCTTCAGGGTCCAGCGGCGCCTCATTCTCAATGGAGCTGCAAAGTAAGT
CTCCGTCTCGGATTCAAGACTTGGTACGACTTCTGCATGCATCGGAAGAC
CCGCTTTGGGAACTCGTCAAGTTTGAAGCCGAGACCTCCGCGGCCCAGGA
CGAGAAGGCGGCCGGCCTAATTCAGCAACGGGTGCTAGATCGAGGCGGCA
TCCAATCTGCAGCACGAGACTTCCTGGCCACAAAATTACAAGGCTCCAAC
TTGCCGGCGACGAAAATGAAGCTTTTGATAGACTCGGTCTTTCAGGAGGA
GCCAGGCATAGTGCAGGATCTCCGCGAGGACCTCCTTGTGGCCACCATGC
GGGACTCGagcattccctcccttctcgccgccttcctcttctctaaAGGC
TACCACGCCGTCGCCACCTACCGCATTGCCCACAGCATATACAGCCAGGG
TCGGGAGTCTCTTGCTCGCTACCTGCAGTCCCTGAATTCTGAGCTCTTTG
GGGCCGATATCCATCCAGCTTGCTGCGTGGGCCGGGCACTCTACCTGTCT
AGCGGGACATGCGTGGTCATAGGAGAGACAGCCAAGCTCGGCGACGATGT
CATAATCATGCAGGGCGTCACACTGGGGGGTAATGGCAAAGAGCGTGGGG
ACCGACACCCAAAACTAGGGAGCGgcgtgctggtggcggcAGGCTCTACA
GTGCTGGGCAATATCCCGATAGGGGATGGCGTCATTATCTCCGCAGGTTC
GGTGGTACTACGGCCCGTACCGGAGTATACTCGATGCAGCGGAGTCCCGG
CGAAAGTAACTTCGGTCCTTCGTAAGCATAAAGAGAATGTGTTGAGCATC
CAAGGGATGGGTCAAAGCCATTTTGTTGAAATTTTTCAGGACCCacaaag
gggagggtgaATGACCCTCTCGATGAAAACGTGGCATTTTCTCCTTATAT
TTTTTGCGTTAGGCCACGTAATGGCCTTTTTTCAtatgcctcctcccact
gtGTTGTGGAAAGGAGAAACACGGGCCTCGTTGTCGCGGGCGGCAAATGA
AGAGATTGGcacagaggggggaaaagaggcggagCAGCGTGCGCCAGTCA
AGGATACCGTGTCTTCAGGGTCCAGCGGCGCCTCATTCTCAATGGAGCTG
CAAAGTAAGTCTCCGTCTCGGATTCAAGACTTGGTACGACTTCTGCATGC
ATCGGAAGACCCGCTTTGGGAACTCGTCAAGTTTGAAGCCGAGACCTCCG
CGGCCCAGGACGAGAAGGCGGCCGGCCTAATTCAGCAACGGGTGCTAGAT
CGAGGCGGCATCCAATCTGCAGCACGAGACTTCCTGGCCACAAAATTACA
AGGCTCCAACTTGCCGGCGACGAAAATGAAGCTTTTGATAGACTCGGTCT
TTCAGGAGGAGCCAGGCATAGTGCAGGATCTCCGCGAGGACCTCCTTGTG
GCCACCATGCGGGACTCGagcattccctcccttctcgccgccttcctctt
ctctaaAGGCTACCACGCCGTCGCCACCTACCGCATTGCCCACAGCATAT
ACAGCCAGGGTCGGGAGTCTCTTGCTCGCTACCTGCAGTCCCTGAATTCT
GAGCTCTTTGGGGCCGATATCCATCCAGCTTGCTGCGTGGGCCGGGCACT
CTACCTGTCTAGCGGGACATGCGTGGTCATAGGAGAGACAGCCAAGCTCG
GCGACGATGTCATAATCATGCAGGGCGTCACACTGGGGGGTAATGGCAAA
GAGCGTGGGGACCGACACCCAAAACTAGGGAGCGgcgtgctggtggcggc
AGGCTCTACAGTGCTGGGCAATATCCCGATAGGGGATGGCGTCATTATCT
CCGCAGGTTCGGTGGTACTACGGCCCGTACCGGAGTATACTCGATGCAGC
GGAGTCCCGGCGAAAGTAACTTCGGTCCTTCGTAAGCATAAAGAGAATGT
GTTGAGCATCCAAGGGATGGGTCAAAGCCATTTTGTTGAAATTTTTCAGG
ACCCacaaaggggagggtgaATGACCCTCTCGATGAAAACGTGGCATTTT
CTCCTTATATTTTTTGCGTTAGGCCACGTAATGGCCTTTTTTCAtatgcc
tcctcccactgtGTTGTGGAAAGGAGAAACACGGGCCTCGTTGTCGCGGG
CGGCAAATGAAGAGATTGGcacagaggggggaaaagaggcggagCAGCGT
GCGCCAGTCAAGGATACCGTGTCTTCAGGGTCCAGCGGCGCCTCATTCTC
AATGGAGCTGCAAAGTAAGTCTCCGTCTCGGATTCAAGACTTGGTACGAC
TTCTGCATGCATCGGAAGACCCGCTTTGGGAACTCGTCAAGTTTGAAGCC
GAGACCTCCGCGGCCCAGGACGAGAAGGCGGCCGGCCTAATTCAGCAACG
GGTGCTAGATCGAGGCGGCATCCAATCTGCAGCACGAGACTTCCTGGCCA
CAAAATTACAAGGCTCCAACTTGCCGGCGACGAAAATGAAGCTTTTGATA
GACTCGGTCTTTCAGGAGGAGCCAGGCATAGTGCAGGATCTCCGCGAGGA
CCTCCTTGTGGCCACCATGCGGGACTCGagcattccctcccttctcgccg
ccttcctcttctctaaAGGCTACCACGCCGTCGCCACCTACCGCATTGCC
CACAGCATATACAGCCAGGGTCGGGAGTCTCTTGCTCGCTACCTGCAGTC
CCTGAATTCTGAGCTCTTTGGGGCCGATATCCATCCAGCTTGCTGCGTGG
GCCGGGCACTCTACCTGTCTAGCGGGACATGCGTGGTCATAGGAGAGACA
GCCAAGCTCGGCGACGATGTCATAATCATGCAGGGCGTCACACTGGGGGG
TAATGGCAAAGAGCGTGGGGACCGACACCCAAAACTAGGGAGCGgcgtgc
tggtggcggcAGGCTCTACAGTGCTGGGCAATATCCCGATAGGGGATGGC
GTCATTATCTCCGCAGGTTCGGTGGTACTACGGCCCGTACCGGAGTATAC
TCGATGCAGCGGAGTCCCGGCGAAAGTAACTTCGGTCCTTCGTAAGCATA
AAGAGAATGTGTTGAGCATCCAAGGGATGGGTCAAAGCCATTTTGTTGAA
ATTTTTCAGGACCCacaaaggggagggtga

Synonyms

Publications