|
|
Properties
| Property Name | Value |
|---|
| Product | Armadillo-like helical |
| Orig transcript id | gnl|cribi|Naga_100020g44.5361.mrna |
| Orig protein id | gnl|cribi|Naga_100020g44.5361 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002468.1 | supercontig | CM002468.1:506432..508841 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna6434 ID=rna6434|Name=rna6434|organism=Nannochloropsis gaditana|type=mRNA|length=2705bp
AACGTAACAAGGTACATTTAGGTACAAGCAATAATTGACCACCAACAAGA
ACAACACAAACGCCGCATTCTGAAAGTGTAATCCCCCCAAAGCCGAGCAA
AGAACAACTTTCTATCAAACGGGTTCGACAGAGTCGGGCTTCGGACTAGC
AGGAATTTGTTGCACGAATAAGTTGCATGCATGCAGCCGCCATAGACACT
AAAGGCATCTGAAGATCGATTGTTGATGTCTGGAAGCTCACCCTCAAGTT
CCGAAGGCTTTCGCTGGTGCGAGGTGCGGTGCAATAAGTGGCAACGCGCT
GGAGCTGAGAGGACACGGGGATGGCTTACATTTTCCATGCATGTACTAGT
ATTTATTCTCATGTCGTTTATTTTTCTAAAATATACTGGACTCGTTTTGC
GAAACCCGGCACCTTTATGCAGCTGGCGGCTTTCCCAGAGTTTGAATGTT
GCATGGACTGATACTCAAGCTTCTCACCATTCCATGGTTATGTTCCTAAA
TGAAGGCGAGGAGTATACAGTTGAAAGCGAATCGCTACCTTACTCTCGAT
TTTTCTCCTTTCAAACGTACTCCCTTGACGGTAAAACGTCCTACGGAATT
CTGCGAGATGCTGAGATTGTTTCCCAAAACGGCCCAAATCTATACGCAAA
TATGAGTGCAGCTGCGGGCGGGGAGAAGCAAGGTGGATACACGCTTTACT
TAACACCGGATGGATCCAAGGGATACCCAAACGAATTGCAAACCCTCAAA
TATGGGCAGAAAAGCGGCTTCTTCGTTCTCATTTTCCGCATTTACGATGT
CGGCGATTTTCCCCATCCGATGGCGCCGTGGGCCCATCTGTCTCGAGGCG
ATGCCCGACAACCACAGCGATGGGGCTGGACACCGCCGCCTCGAGTGTCT
GTCCGTCGTACGATGCGCCAAGGGTCGTGGCGTGAGATTCCGTCTTGCGT
AACGCGCCAAGGCCCTGGCGGAAAACTCTGGAGCAAAACATATATTCTCG
GCCTCACGAACCGCCTAGAGGATATCTTCCCTCCAAGCCACTCATATACA
GGATTTATCAAGCCTCTTCGTCAGAACAATTTCCATCTGCCGCACGATCA
CTTGTTTTCTTCTGTAGACACTCGGACTTTGGTATCTGCGGCGGCAATCC
CCGCTGTTGACGTGGGTGATGTATGGGCTCGTGTTGAGGCCAAACTCCCA
CGCACGCCTTCCTCACTCTATTCGCCACCATTCATAGCCAACCAGAGTGA
TTATGACGTACGCTATATTTCGTTTACCAGCGCCTCTCGTGCCTTTCCTT
TATGGACCTTCGAGACCCTGACGGACAAGAGCATACGGCAGCATTACGAG
TCGCGCCTGCGAGGCCCCCACGAGCAGTGGGACGGACGCTTTTCTCTTTG
GATCGGGCCTGTGAATGCTCCTCCTCCGGAGCAAGCTCGTCTCGAAAATG
CTTTAATCATGAGATGGGGTGAGGTCGCAAGACCCGCTCTTCTCTACAAT
CAGCTTTTGTCTAGCTCCCGAGCAGCGTCAGGCGCAGCTCCACCGACGCT
AGCCAACGTGGTGGTCAATGAATGCCCGCGTGCTGCGGAGCATGATAACC
ACGACGAGGAAGACGAGGACGGCTCCTTCATCAATGAGGGAAATGTGTGC
TGTTTGAGTGAGCCAAGAGGTATGCCGACCTTTTGTCGAATGCCTGAATT
TTTACATTTAAACCTGCGCGAGTATTTTCCAGCTGTAACTTTCTTCTCAT
ATGAAACTCAGGATGAGCACGGGCCTACACTGCGGAAAATTTCTATGTAA
AAAATCAGTGATAGTATGCTTTGTGATGCGTGTATGTGCAGAAGCATGTC
CAGCGGAGGTCAACGGTCTTTCCGGTGTGAACCAGTTGCCCGTTCCAACA
CACTGGTGCCGCGACAGTCAAATGTAGATAAATGCGCGCTTTCGAAGGAT
TGATAATAACAAGTACCTTCATTTGGCCCCGGTACTGGACGATCGTACGT
TCTCCCATAAACGGCGAGTGCGAAAAGCCTAAACGCACATTTTACTGGTA
TCAGACAACAACATTTTGAAAGCCATCTGCATGCCATGTGGGTCCGCAAT
ACCCTGATTTGCCATCGTATATTCTTTGTGAATAGATGCAATATTTTCTT
TTTTCCAGGCCCTTACTGTCAATACCTGGATACACATGACGATAAATGAT
GCACAATATATGCGAGGCATCCCCGAAGGGTATTCCACACCCTTTCCAAT
GATGATGACTTTTCGACATTGCTTAAAAGCTATTGTAATGGATACTACAT
ATAATCTCATTAAACAGCAATGCATGATTTTTCTTGTGAGGCAATCCGCT
CACGTTGTTTCAGCCTCCTCATCATTCCTCATTCTCAGTTCATGTACACA
GTCCCCACGCAGGCTGCGTGGACTACTTCAGTAACTACCAATGGCCGACC
GGCGATGTATGAGAAGACAAAGTATATAACGAGCACTTTGACTGAACACA
AATTTAAATGGAAGACAGGCCTTGCAGGACATCTCTCCTAGCTTTGCACT
AAGCTTTGCACTATTCTTCTCGTATGAAGATGACCATGATGGACAGTCGG
CCTCAACTCGCATCCCACCCTCTGCTTTCTTCTTCTTGTCGTAGACGCAT
TCGGTGCACCTCTTCCACCATATCTTCCGTCACCAAGCTTCCTGACGATA
CCTCG back to topprotein sequence of rna6434 >rna6434-protein ID=rna6434-protein|Name=rna6434|organism=Nannochloropsis gaditana|type=polypeptide|length=485bp
MTETSPLHTGTSSSTGTGLCLVGLAPYLQSSNIYERLYAKQALLHVDAKV
LVNNMSTLVTLLDGSGALSKRCALSLLQKLSPVGLLTALLGRITVHLDDE
DADVRRGVVAVLAHVPTTTLDSYADALLSFVFHPAPSIRVTSLSALAYLS
ATWTQGHLPDILSTALMDLESSDVRWAALDLLQKNVHRFLIEKDCEGEVP
DGGGSNFRQTGTVDPVHGQAETAEIKSTEDNGRDSINSWVLKNESILERG
LAASDACNGEDGGVEKMLQEQATKAIRCFTDPDKYVRWKAVSVLSTYPSH
LLLQDTLEHLLGCLNQPFPFARIAALMALSRLEEKAGHKKRDDMSVEKHT
RAGESFLHFHGEARVVQAMSKRLWDEDYTVRVACLQALRTVPPDVLGAAL
IDGMEEGDGDDCIVAKLASQLKGRNFPPSETDGDDGGHYVQQAAGQILET
LYEVSSGSLVTEDMVEEVHRMRLRQEEESRGWDAS back to topmRNA from alignment at CM002468.1:506432..508841- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna6434 ID=rna6434|Name=rna6434|organism=Nannochloropsis gaditana|type=mRNA|length=2410bp|location=Sequence derived from alignment at CM002468.1:506432..508841- (Nannochloropsis gaditana)
CTGCACGAAGAAATGATTTCGATATCTCTCTCCCACATGGAAGCTCACGG
TAGCAAACAAATCATGCTTATCTCCAGAGTAGGTGTCCGTGCTGCCAAAA
GACGGGGGCTATACAGGGCCTAGCGCGCAGGAGGAGGCGGCGGGGTGCTC
CCAGCGCTCTCCCTCCCGTGCCAGCCCCCCTTCCCACCATGACCGAGACC
TCTCCTCTTCATACCGGGACGTCGAGCAGCACGGGGACAGGGCTATGTCT
GGTCGGGCTTGCGCCCTATTTGCAATCCAGTAACATATATGAGCGCCTGT
ACGCCAAGCAGGCGCTTCTACACGTAGATGCCAAGGTAAGCACTGAAAAG
GGGCAGGATTCACGAACCCTAACCCTAACCCTAACCCGCCCAAGCACTTT
GTGTCAGTTCCTCAGATGTTTACTTACTGAGAGCGCTCTTCCGAAAAAAA
TTTGCGAGAGCCTTGACCAAAATGTCTGATGCCTTTGAAAAGGTGCTCTC
ATCGGTATCGATAAGTGCGCACTACAAAATACTCGCATCCGACTCAGAAG
TCACGCAAAGCACTCATCGATTCCATGTTTGGAACCTCAGGTTCTGGTCA
ACAACATGTCGACCTTGGTAACGTTATTGGATGGTTCGGGCGCCTTATCC
AAGCGCTGTGCTCTCTCTCTCCTCCAAAAGCTTTCCCCTGTTGGCCTCTT
GACTGCCCTACTCGGCCGCATCACCGTGCACCTGGACGATGAAGATGCCG
ACGTCCGACGCGGAGTGGTAGCGGTGCTGGCTCACGTGCCAACGACAACC
CTAGATTCGTACGCTGATGCCCTACTGTCCTTTGTATTCCACCCAGCCCC
GTCCATCCGGGTGACGAGTCTGAGTGCATTGGCCTATCTCTCAGCCACCT
GGACTCAGGGGCATCTACCGGACATCTTGTCCACCGCGCTTATGGACCTG
GAATCTAGCGACGTCCGATGGGCAGCACTCGACCTGCTTCAGAAGAATGT
GCACCGATTTTTGATTGAAAAGGATTGTGAAGGCGAAGTACCGGACGGCG
GAGGGTCTAACTTCAGGCAGACGGGGACAGTTGATCCGGTTCACGGCCAA
GCAGAAACTGCGGAGATCAAGAGCACCGAGGACAATGGTAGAGATAGCAT
AAACAGTTGGGTTCTCAAGAATGAGAGCATCTTGGAGAGAGGTCTTGCCG
CCAGCGATGCCTGTAACGGTGAGGATGGTGGTGTGGAGAAAATGCTTCAG
GAGCAGGCGACGAAAGCTATCCGTTGCTTTACGGATCCCGACAAATACGT
TCGATGGAAGGCTGTGAGCGTCTTAAGCACCTATCCTTCGCATCTACTTT
TGCAAGACACGCTTGAACACTTGTTGGGGTGCCTAAACCAGCCGTTCCCC
TTCGCCCGAATCGCTGCACTCATGGCACTGTCGCGGTTAGAAGAAAAAGC
GGGCCACAAGAAGAGGGACGACATGTCTGTGGAGAAGCACACGAGGGCTG
GAGAGAGTTTCTTGCATTTTCATGGTGAGGCTCGTGTCGTACAAGCCATG
AGCAAGCGGCTGTGGGACGAAGACTACACCGTGCGTGTGGCCTGTCTGCA
GGCGCTCAGGACCGTGCCACCGGACGTGCTGGGGGCCGCACTCATTGATG
GGATGGAAGAGGGGGATGGAGATGATTGCATCGTTGCCAAACTTGCCAGT
CAGCTGAAGGGAAGAAACTTTCCTCCTTCGGAAACAGATGGTGACGACGG
GGGCCACTACGTGCAGCAAGCGGCAGGGCAGATACTAGAAACTTTGTACG
AGGTATCGTCAGGAAGCTTGGTGACGGAAGATATGGTGGAAGAGGTGCAC
CGAATGCGTCTACGACAAGAAGAAGAAAGCAGAGGGTGGGATGCGAGTTG
AGGCCGACTGTCCATCATGGTCATCTTCATACGAGAAGAATAGTGCAAAG
CTTAGTGCAAAGCTAGGAGAGATGTCCTGCAAGGCCTGTCTTCCATTTAA
ATTTGTGTTCAGTCAAAGTGCTCGTTATATACTTTGTCTTCTCATACATC
GCCGGTCGGCCATTGGTAGTTACTGAAGTAGTCCACGCAGCCTGCGTGGG
GACTGTGTACATGAACTGAGAATGAGGAATGATGAGGAGGCTGAAACAAC
GTGAGCGGATTGCCTCACAAGAAAAATCATGCATTGCTGTTTAATGAGAT
TATATGTAGTATCCATTACAATAGCTTTTAAGCAATGTCGAAAAGTCATC
ATCATTGGAAAGGGTGTGGAATACCCTTCGGGGATGCCTCGCATATATTG
TGCATCATTTATCGTCATGTGTATCCAGGTATTGACAGTAAGGGCCTGGA
AAAAAGAAAATATTGCATCTATTCACAAAGAATATACGATGGCAAATCAG
GGTATTGCGG back to topCoding sequence (CDS) from alignment at CM002468.1:506432..508841- >rna6434 ID=rna6434|Name=rna6434|organism=Nannochloropsis gaditana|type=CDS|length=2916bp|location=Sequence derived from alignment at CM002468.1:506432..508841- (Nannochloropsis gaditana)
GTTCTGGTCAACAACATGTCGACCTTGGTAACGTTATTGGATGGTTCGGG
CGCCTTATCCAAGCGCTGTGCTCTCTCTCTCCTCCAAAAGCTTTCCCCTG
TTGGCCTCTTGACTGCCCTACTCGGCCGCATCACCGTGCACCTGGACGAT
GAAGATGCCGACGTCCGACGCGGAGTGGTAGCGGTGCTGGCTCACGTGCC
AACGACAACCCTAGATTCGTACGCTGATGCCCTACTGTCCTTTGTATTCC
ACCCAGCCCCGTCCATCCGGGTGACGAGTCTGAGTGCATTGGCCTATCTC
TCAGCCACCTGGACTCAGGGGCATCTACCGGACATCTTGTCCACCGCGCT
TATGGACCTGGAATCTAGCGACGTCCGATGGGCAGCACTCGACCTGCTTC
AGAAGAATGTGCACCGATTTTTGATTGAAAAGGATTGTGAAGGCGAAGTA
CCGGACGGCGGAGGGTCTAACTTCAGGCAGACGGGGACAGTTGATCCGGT
TCACGGCCAAGCAGAAACTGCGGAGATCAAGAGCACCGAGGACAATGGTA
GAGATAGCATAAACAGTTGGGTTCTCAAGAATGAGAGCATCTTGGAGAGA
GGTCTTGCCGCCAGCGATGCCTGTAACGGTGAGGATGGTGGTGTGGAGAA
AATGCTTCAGGAGCAGGCGACGAAAGCTATCCGTTGCTTTACGGATCCCG
ACAAATACGTTCGATGGAAGGCTGTGAGCGTCTTAAGCACCTATCCTTCG
CATCTACTTTTGCAAGACACGCTTGAACACTTGTTGGGGTGCCTAAACCA
GCCGTTCCCCTTCGCCCGAATCGCTGCACTCATGGCACTGTCGCGGTTAG
AAGAAAAAGCGGGCCACAAGAAGAGGGACGACATGTCTGTGGAGAAGCAC
ACGAGGGCTGGAGAGAGTTTCTTGCATTTTCATGGTGAGGCTCGTGTCGT
ACAAGCCATGAGCAAGCGGCTGTGGGACGAAGACTACACCGTGCGTGTGG
CCTGTCTGCAGGCGCTCAGGACCGTGCCACCGGACGTGCTGGGGGCCGCA
CTCATTGATGGGATGGAAGAGGGGGATGGAGATGATTGCATCGTTGCCAA
ACTTGCCAGTCAGCTGAAGGGAAGAAACTTTCCTCCTTCGGAAACAGATG
GTGACGACGGGGGCCACTACGTGCAGCAAGCGGCAGGGCAGATACTAGAA
ACTTTGTACGAGGTATCGTCAGGAAGCTTGGTGACGGAAGATATGGTGGA
AGAGGTGCACCGAATGCGTCTACGACAAGAAGAAGAAAGCAGAGGGTGGG
ATGCGAGTTGAATGACCGAGACCTCTCCTCTTCATACCGGGACGTCGAGC
AGCACGGGGACAGGGCTATGTCTGGTCGGGCTTGCGCCCTATTTGCAATC
CAGTAACATATATGAGCGCCTGTACGCCAAGCAGGCGCTTCTACACGTAG
ATGCCAAGGTTCTGGTCAACAACATGTCGACCTTGGTAACGTTATTGGAT
GGTTCGGGCGCCTTATCCAAGCGCTGTGCTCTCTCTCTCCTCCAAAAGCT
TTCCCCTGTTGGCCTCTTGACTGCCCTACTCGGCCGCATCACCGTGCACC
TGGACGATGAAGATGCCGACGTCCGACGCGGAGTGGTAGCGGTGCTGGCT
CACGTGCCAACGACAACCCTAGATTCGTACGCTGATGCCCTACTGTCCTT
TGTATTCCACCCAGCCCCGTCCATCCGGGTGACGAGTCTGAGTGCATTGG
CCTATCTCTCAGCCACCTGGACTCAGGGGCATCTACCGGACATCTTGTCC
ACCGCGCTTATGGACCTGGAATCTAGCGACGTCCGATGGGCAGCACTCGA
CCTGCTTCAGAAGAATGTGCACCGATTTTTGATTGAAAAGGATTGTGAAG
GCGAAGTACCGGACGGCGGAGGGTCTAACTTCAGGCAGACGGGGACAGTT
GATCCGGTTCACGGCCAAGCAGAAACTGCGGAGATCAAGAGCACCGAGGA
CAATGGTAGAGATAGCATAAACAGTTGGGTTCTCAAGAATGAGAGCATCT
TGGAGAGAGGTCTTGCCGCCAGCGATGCCTGTAACGGTGAGGATGGTGGT
GTGGAGAAAATGCTTCAGGAGCAGGCGACGAAAGCTATCCGTTGCTTTAC
GGATCCCGACAAATACGTTCGATGGAAGGCTGTGAGCGTCTTAAGCACCT
ATCCTTCGCATCTACTTTTGCAAGACACGCTTGAACACTTGTTGGGGTGC
CTAAACCAGCCGTTCCCCTTCGCCCGAATCGCTGCACTCATGGCACTGTC
GCGGTTAGAAGAAAAAGCGGGCCACAAGAAGAGGGACGACATGTCTGTGG
AGAAGCACACGAGGGCTGGAGAGAGTTTCTTGCATTTTCATGGTGAGGCT
CGTGTCGTACAAGCCATGAGCAAGCGGCTGTGGGACGAAGACTACACCGT
GCGTGTGGCCTGTCTGCAGGCGCTCAGGACCGTGCCACCGGACGTGCTGG
GGGCCGCACTCATTGATGGGATGGAAGAGGGGGATGGAGATGATTGCATC
GTTGCCAAACTTGCCAGTCAGCTGAAGGGAAGAAACTTTCCTCCTTCGGA
AACAGATGGTGACGACGGGGGCCACTACGTGCAGCAAGCGGCAGGGCAGA
TACTAGAAACTTTGTACGAGGTATCGTCAGGAAGCTTGGTGACGGAAGAT
ATGGTGGAAGAGGTGCACCGAATGCGTCTACGACAAGAAGAAGAAAGCAG
AGGGTGGGATGCGAGTTGAATGACCGAGACCTCTCCTCTTCATACCGGGA
CGTCGAGCAGCACGGGGACAGGGCTATGTCTGGTCGGGCTTGCGCCCTAT
TTGCAATCCAGTAACATATATGAGCGCCTGTACGCCAAGCAGGCGCTTCT
ACACGTAGATGCCAAG back to top
|