rna6427, rna6427 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6427
Unique Name	rna6427
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1296
Alignment location	CM002468.1:489261..491144 +

Link to JBrowse

Properties


Property Name	Value
Product	methyltransferase 10 domain containing
Orig transcript id	gnl\|cribi\|Naga_100020g51.5380.mrna
Orig protein id	gnl\|cribi\|Naga_100020g51.5380
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002468.1	supercontig	CM002468.1:489261..491144 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100020g51	gene6210	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6427	rna6427-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24247.1	cds6411	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002468.1:489261..491144+
coding sequence from alignment at CM002468.1:489261..491144+

mRNA sequence

>rna6427 ID=rna6427|Name=rna6427|organism=Nannochloropsis gaditana|type=mRNA|length=1296bp
ATGCTTCTGCACATCGGGAAGGTTGGAAGAAAAGTGGCTGTCTATTTCCT
GTTGGCCTTCGCCTTCGCAGGCGAACCTACTCAAGCCTTCCTGCCCGTCC
TGCGAGCTTCTTCGCCATTGTTGCCACATTCATTGTCCGTTGTGCGTCAT
GTTCCTGATCTAGGCCTGACAAAAGACAGCTCTTCCTCGTCGAAGTCTTC
CTGTCGGCCTGTCTCTTTATCTTCAGTGAATTCCGCATCCCCTTCTGGTG
GGTCGAATGAGGTGGCCGAGGACGGGGTCTCTCTCAAGGACCTGCAGGAC
CTGGGAGCCGATGCCGCATTTTTGGAAACGCAGGTAGTGGAATGGCTTGA
CAACGAATGGATACCGCAGGATTGTCATCAGGAGGTTGCAAAAGTTGCTG
CCAAGGCCTATGTGAAGGCCCGTGATGAGGGCATCGCCGACCTTGGCGGA
GTCCTACTGCACGTGGGCACCGAGCTGGAGGACATGGACATGGGGGACGC
ATTTGTGGACGCCTGGATGGTGGCCAATAAAGTCTCAGACCTTCTACTTA
TGCGCATGGGCCGCGAAGTCTGCTGTCCGGAGCCGGAGTTTACGGACGAG
CAGCGTGTGCTCATGACGGAGGGTCGCGGAGAGCGGGAGATCATAGCGTC
CGGCCTCCTGGGACGCGGTGCTCCTGGCAGCAAAGCTACCCTTGGCGGCG
GGAGTGGTGGCAGCTCCTTGCTCAAGGACAAAGATGTACCACAATTACTG
AATCCTCAAGCCCCCCCTGCATTTTTTACGTTGGACGCGGTCCTACGTTC
AGCCGAGCAATACGTCGACGAGTTCGCGCGCTTCGATTTTATCCGTAAAT
TTCTGGATGGCCACGATGAAGCGTGGGCTGAAGCCAACATCATCATGGCA
ATAATACTTGGCTACAAATTTGATGAATGGGGCAACATCAACCTTGAAGA
CGTGCATGAACGCTTTCGAGAGCTTGCTTTCCCACCTGACTTTCGGGGAA
ACGAGGAAATGCGAGCCATGTTAGACGCTATCCTTCGGGAGGATGAAGAT
GAAGAGAAAATGAAGGGGCTGGAGGAATTTCTCGAAGTTATGGTAGGTAA
AGCTTACTACCATCAATCGGACAAAGGTGATAACGAAGATTTTGCCTGTC
GCGCGACACTTATAAAGTGGATCTACGAATATGATTTTGTGAATGACTGG
CCTAGACTCCCCACCGTCCAGGCATTGCTTGAGGTGAAAGCCCGCATTGA
TGCCAAGCAGGAGGAGAACAAGCCACCTCAACGTTTCCTCTATTGA

protein sequence of rna6427

>rna6427-protein ID=rna6427-protein|Name=rna6427|organism=Nannochloropsis gaditana|type=polypeptide|length=589bp
MDKDLRLEPYAGEGRWSGIKRTRVGCEAKFHQDSKYRGYRPDFAALARLY
PDTFGHLVIYLNDDKSEALIDWKDPISTRALTKTLLRHDFGLEWDIPLER
LCPPVPNRLNYVCWVKDLLSLGGSDTSQSRTGIRGLDVGTGASAIYPLLG
CKLHDWSFLGTDIDPEALEAASANVRENHMEDRISLQLVSRVDYSELSSF
SFTALQTGAGSVRGPIQTALDAAGMGSEYELDFVMCNPPFFASLDEIHSG
FSLKSGRKTSKRISTDPHGCADEMITPGGELAFVTAMILDSLALRDRVRW
YSSMVGKKLSLKKLLGLLREAGVQNVRTTQFAQGRTTRWGIAWSFSQAGL
AEVKGAGASAHKVFGKRKMVKKRETSFSFSVRFNPPLQTADVEEGSSEEA
VVLDRVLEYFSITRNLCVLRVGITCGAAEDLFRKMIVVELSSHGTPTKAP
PVVVSAFAAPPVPPSDPGWKMRCVVLITVLAGASHEDSNDEALTTADLGR
EPQPLVSEEMNVDDIENGERGREGECSVEVNIEMTSGGDRPAFWKLCNLL
PGEVSRTNRKWRRKTIFQEKKNEAASNPQIGDAKKLGRN

mRNA from alignment at CM002468.1:489261..491144+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6427 ID=rna6427|Name=rna6427|organism=Nannochloropsis gaditana|type=mRNA|length=1884bp|location=Sequence derived from alignment at CM002468.1:489261..491144+ (Nannochloropsis gaditana)
ATGGACAAGGATCTCAGGTTAGAGCCTTATGCGGGCGAGGGACGATGGTC
GGGCATCAAGCGCACGCGGGTTGGGTGCGAGGCCAAATTCCATCAAGACT
CGAAGTACAGAGGTTACAGGCCGGACTTTGCAGCACTAGCTCGCCTGTAT
CCCGACACCTTTGGACACCTGTACGTGCTTACAAAAGAGCTCATTTCACG
CATGAAATTACAATTTCTCCGCAATCTTCTTTCAAATGCATATTGATCAC
TCGTTCCTTAATGTTTCGGCCCTTCACGCAACAGAGTCATTTACCTGAAT
GACGACAAAAGTGAAGCGCTTATTGACTGGAAAGATCCAATTTCAACGAG
AGCTTTAACAAAAACACTTCTTCGCCATGATTTTGGTCTCGAGTGGGATA
TTCCGCTTGAGCGACTATGTCCACCGGTTCCAAACCGTCTGAATTACGTC
TGCTGGGTGAAGgatctcctctccttgggtGGCTCCGATACATCTCAATC
AAGAACTGGTATTCGAGGTTTAGATGTGGGTACTGGTGCCTCCGCAATAT
ACCCGCTGCTTGGGTGCAAGCTTCATGATTGGTCGTTTCTGGGAACGGAT
ATTGACCCGGAGGCTTTAGAAGCAGCCTCGGCAAATGTTCGCGAAAACCA
TATGGAAGATCGCATCTCCCTACAGCTTGTATCGCGCGTGGATTACAGCG
AGCTATCTTCATTCTCTTTCACAGCTCTCCAAACAGGAGCTGGGAGTGTC
CGCGGACCCATCCAAACTGCCCTAGACGCCGCTGGAATGGGATCCGAATA
CGAGCTGGACTTCGTCATGTGTAATCCGCCTTTTTTTGCATCTTTGGATG
AAATTCATTCGGGTTTTTCGCTTAAAagtgggaggaaaacaaGCAAGAGA
ATTTCCACAGATCCGCATGGCTGCGCGGACGAGATGATCACCCCTGGTGG
GGAACTTGCCTTTGTGACGGCAATGATACTTGATAGTCTGGCACTTCGGG
ATAGAGTACGCTGGTATAGTAGTATGGTAGGTAAAAAGCTATCTTTGAAA
AAGCTATTGGGTTTGCTCAGAGAAGCAGGAGTGCAAAATGTCCGCACCAC
GCAGTTTGCTCAGGGTCGCACCACTCGTTGGGGCATCGCTTGGAGCTTCT
CTCAGGCAGGACTGGCGGAAGTGAAAGGGGCTGGGGCTAGCGCTCACAAA
GTGttcgggaaaagaaagatggTCAAGAAGCGGGAGACGTCTTTCTCATT
CTCTGTGCGCTTTAATCCTCCGTTACAAACCGCGGACGTGGAAGAAGGGT
CGTCAGAGGAGGCAGTAGTGCTGGACCGGGTGCTCGAATACTTCAGTATT
ACCCGCAACTTATGCGTGCTGCGCGTTGGCATCACTTGTGGCGCGGCCGA
AGACTTATTCCGTAAAATGATTGTGGTTGAATTGAGTTCACATGGCACGC
CGACGAAAGCCCCCCCTGTTGTTGTCTCGGCCTTCGCTgcgcctcctgtc
cctccttcggaTCCAGGCTGGAAGATGCGCTGCGTGGTTCTGATCACCGT
CTTAGCTGGGGCTAGTCATGAAGACTCAAATGATGAAGCATTGACGACCG
CGGACCTAGGGCGTGAGCCGCAGCCGCTCGTGTCTGAGGAAATGAACGTT
GACGACATAGAGAAtggcgagagggggagagaaggggagtgCAGTGTGGA
AGTGAACATTGAGATGACCTCGGGTGGTGACCGCCCAGCGTTTTGGAAGC
TCTGTAATTTGCTTCCGGGGGAAGTTTCACGGACTAATCGGAAATGGCGG
CGCAAGACTATCTttcaagaaaaaaagaatgaagCCGCGTCGAATCCACA
AATTGGTGATGCCAAAAAACTGGGTAGGAATTAA

Coding sequence (CDS) from alignment at CM002468.1:489261..491144+

>rna6427 ID=rna6427|Name=rna6427|organism=Nannochloropsis gaditana|type=CDS|length=3540bp|location=Sequence derived from alignment at CM002468.1:489261..491144+ (Nannochloropsis gaditana)
ATGGACAAGGATCTCAGGTTAGAGCCTTATGCGGGCGAGGGACGATGGTC
GGGCATCAAGCGCACGCGGGTTGGGTGCGAGGCCAAATTCCATCAAGACT
CGAAGTACAGAGGTTACAGGCCGGACTTTGCAGCACTAGCTCGCCTGTAT
CCCGACACCTTTGGACACCTAGTCATTTACCTGAATGACGACAAAAGTGA
AGCGCTTATTGACTGGAAAGATCCAATTTCAACGAGAGCTTTAACAAAAA
CACTTCTTCGCCATGATTTTGGTCTCGAGTGGGATATTCCGCTTGAGCGA
CTATGTCCACCGGTTCCAAACCGTCTGAATTACGTCTGCTGGGTGAAGga
tctcctctccttgggtGGCTCCGATACATCTCAATCAAGAACTGGTATTC
GAGGTTTAGATGTGGGTACTGGTGCCTCCGCAATATACCCGCTGCTTGGG
TGCAAGCTTCATGATTGGTCGTTTCTGGGAACGGATATTGACCCGGAGGC
TTTAGAAGCAGCCTCGGCAAATGTTCGCGAAAACCATATGGAAGATCGCA
TCTCCCTACAGCTTGTATCGCGCGTGGATTACAGCGAGCTATCTTCATTC
TCTTTCACAGCTCTCCAAACAGGAGCTGGGAGTGTCCGCGGACCCATCCA
AACTGCCCTAGACGCCGCTGGAATGGGATCCGAATACGAGCTGGACTTCG
TCATGTGTAATCCGCCTTTTTTTGCATCTTTGGATGAAATTCATTCGGGT
TTTTCGCTTAAAagtgggaggaaaacaaGCAAGAGAATTTCCACAGATCC
GCATGGCTGCGCGGACGAGATGATCACCCCTGGTGGGGAACTTGCCTTTG
TGACGGCAATGATACTTGATAGTCTGGCACTTCGGGATAGAGTACGCTGG
TATAGTAGTATGGTAGGTAAAAAGCTATCTTTGAAAAAGCTATTGGGTTT
GCTCAGAGAAGCAGGAGTGCAAAATGTCCGCACCACGCAGTTTGCTCAGG
GTCGCACCACTCGTTGGGGCATCGCTTGGAGCTTCTCTCAGGCAGGACTG
GCGGAAGTGAAAGGGGCTGGGGCTAGCGCTCACAAAGTGttcgggaaaag
aaagatggTCAAGAAGCGGGAGACGTCTTTCTCATTCTCTGTGCGCTTTA
ATCCTCCGTTACAAACCGCGGACGTGGAAGAAGGGTCGTCAGAGGAGGCA
GTAGTGCTGGACCGGGTGCTCGAATACTTCAGTATTACCCGCAACTTATG
CGTGCTGCGCGTTGGCATCACTTGTGGCGCGGCCGAAGACTTATTCCGTA
AAATGATTGTGGTTGAATTGAGTTCACATGGCACGCCGACGAAAGCCCCC
CCTGTTGTTGTCTCGGCCTTCGCTgcgcctcctgtccctccttcggaTCC
AGGCTGGAAGATGCGCTGCGTGGTTCTGATCACCGTCTTAGCTGGGGCTA
GTCATGAAGACTCAAATGATGAAGCATTGACGACCGCGGACCTAGGGCGT
GAGCCGCAGCCGCTCGTGTCTGAGGAAATGAACGTTGACGACATAGAGAA
tggcgagagggggagagaaggggagtgCAGTGTGGAAGTGAACATTGAGA
TGACCTCGGGTGGTGACCGCCCAGCGTTTTGGAAGCTCTGTAATTTGCTT
CCGGGGGAAGTTTCACGGACTAATCGGAAATGGCGGCGCAAGACTATCTt
tcaagaaaaaaagaatgaagCCGCGTCGAATCCACAAATTGGTGATGCCA
AAAAACTGGGTAGGAATTAAATGGACAAGGATCTCAGGTTAGAGCCTTAT
GCGGGCGAGGGACGATGGTCGGGCATCAAGCGCACGCGGGTTGGGTGCGA
GGCCAAATTCCATCAAGACTCGAAGTACAGAGGTTACAGGCCGGACTTTG
CAGCACTAGCTCGCCTGTATCCCGACACCTTTGGACACCTAGTCATTTAC
CTGAATGACGACAAAAGTGAAGCGCTTATTGACTGGAAAGATCCAATTTC
AACGAGAGCTTTAACAAAAACACTTCTTCGCCATGATTTTGGTCTCGAGT
GGGATATTCCGCTTGAGCGACTATGTCCACCGGTTCCAAACCGTCTGAAT
TACGTCTGCTGGGTGAAGgatctcctctccttgggtGGCTCCGATACATC
TCAATCAAGAACTGGTATTCGAGGTTTAGATGTGGGTACTGGTGCCTCCG
CAATATACCCGCTGCTTGGGTGCAAGCTTCATGATTGGTCGTTTCTGGGA
ACGGATATTGACCCGGAGGCTTTAGAAGCAGCCTCGGCAAATGTTCGCGA
AAACCATATGGAAGATCGCATCTCCCTACAGCTTGTATCGCGCGTGGATT
ACAGCGAGCTATCTTCATTCTCTTTCACAGCTCTCCAAACAGGAGCTGGG
AGTGTCCGCGGACCCATCCAAACTGCCCTAGACGCCGCTGGAATGGGATC
CGAATACGAGCTGGACTTCGTCATGTGTAATCCGCCTTTTTTTGCATCTT
TGGATGAAATTCATTCGGGTTTTTCGCTTAAAagtgggaggaaaacaaGC
AAGAGAATTTCCACAGATCCGCATGGCTGCGCGGACGAGATGATCACCCC
TGGTGGGGAACTTGCCTTTGTGACGGCAATGATACTTGATAGTCTGGCAC
TTCGGGATAGAGTACGCTGGTATAGTAGTATGGTAGGTAAAAAGCTATCT
TTGAAAAAGCTATTGGGTTTGCTCAGAGAAGCAGGAGTGCAAAATGTCCG
CACCACGCAGTTTGCTCAGGGTCGCACCACTCGTTGGGGCATCGCTTGGA
GCTTCTCTCAGGCAGGACTGGCGGAAGTGAAAGGGGCTGGGGCTAGCGCT
CACAAAGTGttcgggaaaagaaagatggTCAAGAAGCGGGAGACGTCTTT
CTCATTCTCTGTGCGCTTTAATCCTCCGTTACAAACCGCGGACGTGGAAG
AAGGGTCGTCAGAGGAGGCAGTAGTGCTGGACCGGGTGCTCGAATACTTC
AGTATTACCCGCAACTTATGCGTGCTGCGCGTTGGCATCACTTGTGGCGC
GGCCGAAGACTTATTCCGTAAAATGATTGTGGTTGAATTGAGTTCACATG
GCACGCCGACGAAAGCCCCCCCTGTTGTTGTCTCGGCCTTCGCTgcgcct
cctgtccctccttcggaTCCAGGCTGGAAGATGCGCTGCGTGGTTCTGAT
CACCGTCTTAGCTGGGGCTAGTCATGAAGACTCAAATGATGAAGCATTGA
CGACCGCGGACCTAGGGCGTGAGCCGCAGCCGCTCGTGTCTGAGGAAATG
AACGTTGACGACATAGAGAAtggcgagagggggagagaaggggagtgCAG
TGTGGAAGTGAACATTGAGATGACCTCGGGTGGTGACCGCCCAGCGTTTT
GGAAGCTCTGTAATTTGCTTCCGGGGGAAGTTTCACGGACTAATCGGAAA
TGGCGGCGCAAGACTATCTttcaagaaaaaaagaatgaagCCGCGTCGAA
TCCACAAATTGGTGATGCCAAAAAACTGGGTAGGAATTAA

Synonyms

Publications