rna6418, rna6418 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6418
Unique Name	rna6418
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2075
Alignment location	CM002468.1:474021..475764 -

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Properties


Property Name	Value
Product	proly 4-hydroxylase
Orig transcript id	gnl\|cribi\|Naga_100020g63.5399.mrna
Orig protein id	gnl\|cribi\|Naga_100020g63.5399
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002468.1	supercontig	CM002468.1:474021..475764 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100020g63	gene6201	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6418	rna6418-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24266.1	cds6402	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002468.1:474021..475764-
coding sequence from alignment at CM002468.1:474021..475764-

mRNA sequence

>rna6418 ID=rna6418|Name=rna6418|organism=Nannochloropsis gaditana|type=mRNA|length=2075bp
CGCAAACTGGCCAAGACTTAAGCCGTCTTCAGCTTACTTCTCCTTTCTCC
TCAACTCCCCATGTTTGAAGGAAGTTTACACACCAGGGCAGGACCTGTGT
AAAAATGAGCTCCACGCCTCATTCGAAGCACGTCAGTACCGAGGGCAGGG
AGAAGGTCTCGACCGCGCGACATCCTGAAAAGGACAACGGTATGCACATG
AGATACCACATTGCCCTTCCTGACATTAAGAGCTGCTTATGCATTGAAAA
CATACCATGCATATACGGTCAATCCATGGCATTTATGTCGCAAAACATGC
TTGCAGTCAGTAACACAGGGTATGCCAATAGCCCGTGAGAGGACCAATTC
CATCTGCGATGTACCATATTCCCTGTGATAAAATGCTAAAAATGTCCCAG
GAAACAGAAAGCTGTGGGGTGGGGTGCAAGAATGGTCAATTAAATGTGTG
AGCAAATGTCTAAAGCCAGAAAGGAAGACCGATGATGAGAGGATGATCAG
TCTCACGAGCATGCTGAGGGTCCCTTCACGAAGTCTCCAGATGCCCCGTT
CACTTTTCCCACCCTTTTCTCATGTTGATCTTTCAAGGGCACCACCATCA
GCATGAGCACCACCACTCCACCTCCCGTGGCGATGAGCATTGCGACGCGC
ACAATAAAGTTGTAGAAGACCAACGCAAGCATATCCACGATCATGATTAC
CACCATCACCATCATCACCATTACCATGACAACAGCATGAGCGCTCAGCA
AAAGGGCGATCATTTACCATCCAAGAGACATTCACACAATTATGATGAGC
ACGGTCATACTCACGAGCCGATGGAGTCTCCCGGCGCTTTCCACACGCGC
GACCAGCCCTTGAAAAGGGATTATTTAGAGCGCGCTTTTACAGTAGGCGT
GGGTGGGCCGGTAGGATCTGGTAAGACAGCTTTATTGTATGCTCTCTGCA
AGGCACTTCGTCATGATTACAGCATCGCCGCGATAACCAATGACATCTTC
ACGCAAGAGGACGGGGAGTTTCTTTTACGGCACTCAGCCCTCGAGCCTGA
TCGTATCCTGGCAATTGAGACCGGTGGTTGCCCCCACGCGGCGATCCGGG
AGGATATTTCAGCGAACCTGGCCGGGTGCGAGGGTATGACCGGCAAGCAC
AACGCAGATATAATTCTCGTGGAATCAGGTGGCGACAACCTAGCCGCCAA
CTTCAGCCGGGAACTCGCGGACTATATTATCTACGTCATAGATGTAGCGG
GTGGGGACAAGGTGCCCCGCAAAGGGGGACCGGGTATCACCCAGTCGGAT
CTCCTCGTCATTAATAAGACCGATCTGGCTGACTCGGTGGGTGCCGATTT
GGAGCGCATGGCCCGTGAGGCGGCTGTGATGCGCGGGGACGGGCCTGTTG
TTATGGCTCAAGTGAAGTTTGACATTGGCGTTCAGGACATTATCGCGCAC
ATCCTCAAGGCGTGGAAGTTAGCTACTGGAGTCATACGCCCCAAGAAAAC
ATCAGGAATCAGGGACGTGGCGGAGAAAAGCTCCTGAGGTGCAAAAAGCC
ATCTTGCTTGAGATGGAAGATCGGTCAAGATAAATGCATGCGAGTTCAAG
TTGTCTTTATCAGTCAACATGCTGATTCACAGAGAATGAGTCGGTTGAAA
GTAAGGCATCTGACTGGGATAGGTCGAATAAATTGGGGTAGTGCTTGTTA
GTACCGCGTCATGTCGCACGTAATGAGTGATATGGAGAGCTGAGTCCGCG
TGCGCTTAAACTCGGGGCGCGATCCAATTTGTTATCCTCTATCGGCGTAT
TTTCTATTGTAAATACTCTGCTAAAGATCAATCTGGGGTCGAGGGTAGAA
TTTGGTGAGAGTCCTTTTGAAACACATCCGAGCAATCGCCTGGCCCCGAC
TATCCCTCTCACTGAGAAATGGACAAGGTTTCAGCTTTCTTATGCCGTTG
CTCGCAACGAAATGCACTATTATGCAGGAAAGGAAAGAAGGGCTCGATAA
CGAACAGGGCAAACTCTTATCAAGGAGCATTCGGGAGCGAGAAGTCATGG
GAATGAACCAGAGCATTTTTTTTCA

protein sequence of rna6418

>rna6418-protein ID=rna6418-protein|Name=rna6418|organism=Nannochloropsis gaditana|type=polypeptide|length=480bp
MMKSTRSVNKDTNEINKMNSCKDVKGAAASRNILQHRLIGTKKSEWVKNL
HGSLAIIVVGTLGALASYLAGYFWRNEAAKPLDSYERILSTVYPHDSAFR
TEQNSTVSGPSLAGCSISTLFADEPVHGMHLGCIQHTPTGLYATMFMDGQ
NHTRREVIASMNDFQGLRTLLGDRLGLAPVGRRNGEGPRDKETPNTQKPW
SMFSPQGIAIDSLLDLQEGANDVLLYEGGRFIWPGVREGYVTQVTALDRL
GSVKMQTLSMSPLVFSVENFLLPEECTYIRDVAEPHMRQSGVKLMDHDKG
KAATDWRTSSTHFLASKHHARIQSVDRRVAGLTRQPVSHQEDVQVLRYES
TQRYDAHHDFFDRRLYARDPDTLKLIDNGKRNRMATVLWYLSDVLQGGET
IFPLHNGGEISYDSRHCERMKGALRCPPKEGSVIIFYSLLPNGDLDDRSL
HGSCAVKHGVKWAANKWIWSDEIAPILGRA

mRNA from alignment at CM002468.1:474021..475764-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6418 ID=rna6418|Name=rna6418|organism=Nannochloropsis gaditana|type=mRNA|length=1744bp|location=Sequence derived from alignment at CM002468.1:474021..475764- (Nannochloropsis gaditana)
AGCCTCTCATGAAACGGGACACATATCACACAGGTCGCGCCCATGATGAA
ATCAACACGCTCAGTTAATAAGGATACCAATGAAATCAATAAAATGAATT
CATGTAAGGACGTCAAAGGAGCTGCTGCGAGCAGGAATATCCTGCAACAT
AGGTTAATAGGAACCAAAAAAAGCGAATGGGTCAAGAACTTGCACGGTAG
CCTGGCGATCATTGTGGTGGGGACCCTCGGTGCCCTTGCAAGTTATTTGG
CGGGCTATTTTTGGCGCAACGAGGCTGCAAAGCCTCTGGATTCCTACGAA
CGTATCCTCTCTACTGTATACCCGCATGATTCGGCTTTTCGAACCGAGCA
AAACTCTACGGTGTCGGGCCCATCCTTGGCTGGTTGCAGCATCTCTACCC
TATTCGCCGACGAGCCAGTGCACGGGATGCACCTGGGTTGCATCCAACAC
ACGTACGTACCACTTAATTGCGTATTCCATCAGGGGCACATAAGTAATGT
CATATAATCTGTACGAGTAATCAAGTATCATTTCTTCGCATGCGTGCCTC
TAACAAAATTAAACGGGTAGCCCAACAGGTTTATATGCCACCATGTTTAT
GGATGGCCAGAATCACACCAGAAGAGAAGTTATCGCTTCGATGAATGACT
TCCAAGGTTTGCGCACACTGCTTGGAGACCGTCTAGGGTTAGCGCCTGTC
GGTCGCCGCAATGGAGAAGGCCCACGGGACAAAGAGACACCCAACACACA
GAAGCCTTGGAGCATGTTCTCGCCTCAAGGTATCGCCATTGACAGCCTGC
TAGACCTACAGGAAGGAGCCAACGATGTGCTGCTCTACGAGGGTGGAAGA
TTTATTTGGCCAGGTGTCCGTGAAGGATACGTCACGCAGGTGACGGCGTT
GGACCGCCTAGGGTCCGTGAAGATGCAGACCCTCTCTATGTCACCTCTTG
TCTTCTCTGTCGAGAATTTCTTGCTTCCCGAGGAATGCACTTACATTCGG
GATGTCGCTGAGCCCCACATGCGACAGTCGGGGGTGAAGCTCATGGACCA
CGACAAGGGCAAGGCGGCCACGGACTGGCGGACGAGCTCCACGCACTTCC
TTGCTTCCAAGCACCATGCCCGCATTCAATCAGTCGACCGCCGGGTGGCG
GGACTCACTCGGCAGCCTGTCTCGCACCAGGAAGACGTGCAAGTGTTGAG
ATACGAGTCCACGCAGCGTTACGATGCCCACCATGATTTCTTCGACCGTC
GCTTGTACGCGAGGGACCCCGACACGCTCAAGCTCATCGATAATGGGAAA
AGAAACCGTATGGCTACAGTCCTTTGGTATTTGAGTGACGTATTGCAAGG
CGGTGAAACGATATTTCCTCTTCACAACGGCGGGGAAATCTCCTACGACA
GCCGCCACTGCGAACGTATGAAGGGCGCGCTTCGCTGTCCACCGAAGGAA
GGAAGCGTGATTATCTTCTATTCCTTGCTCCCGAATGGCGATCTGGATGA
CCGCAGTCTTCATGGTTCTTGCGCTGTTAAACATGGGGTCAAGTGGGCAG
CCAACAAATGGATATGGAGTGATGAAATCGCACCCATCCTGGGGCGTGCC
TAGAAATTTGAATGTGAAGCACAAGTGAACAGCCGTCCCTTCACATCTTG
GATTGGTGGGACAATCAAAGGCTGAAATTTAAGTCAACCTCGGCACACTT
TTACGTTTTAATATTTAATTTTAATTTTAATACATGTCCTCACG

Coding sequence (CDS) from alignment at CM002468.1:474021..475764-

>rna6418 ID=rna6418|Name=rna6418|organism=Nannochloropsis gaditana|type=CDS|length=2886bp|location=Sequence derived from alignment at CM002468.1:474021..475764- (Nannochloropsis gaditana)
CCCAACAGGTTTATATGCCACCATGTTTATGGATGGCCAGAATCACACCA
GAAGAGAAGTTATCGCTTCGATGAATGACTTCCAAGGTTTGCGCACACTG
CTTGGAGACCGTCTAGGGTTAGCGCCTGTCGGTCGCCGCAATGGAGAAGG
CCCACGGGACAAAGAGACACCCAACACACAGAAGCCTTGGAGCATGTTCT
CGCCTCAAGGTATCGCCATTGACAGCCTGCTAGACCTACAGGAAGGAGCC
AACGATGTGCTGCTCTACGAGGGTGGAAGATTTATTTGGCCAGGTGTCCG
TGAAGGATACGTCACGCAGGTGACGGCGTTGGACCGCCTAGGGTCCGTGA
AGATGCAGACCCTCTCTATGTCACCTCTTGTCTTCTCTGTCGAGAATTTC
TTGCTTCCCGAGGAATGCACTTACATTCGGGATGTCGCTGAGCCCCACAT
GCGACAGTCGGGGGTGAAGCTCATGGACCACGACAAGGGCAAGGCGGCCA
CGGACTGGCGGACGAGCTCCACGCACTTCCTTGCTTCCAAGCACCATGCC
CGCATTCAATCAGTCGACCGCCGGGTGGCGGGACTCACTCGGCAGCCTGT
CTCGCACCAGGAAGACGTGCAAGTGTTGAGATACGAGTCCACGCAGCGTT
ACGATGCCCACCATGATTTCTTCGACCGTCGCTTGTACGCGAGGGACCCC
GACACGCTCAAGCTCATCGATAATGGGAAAAGAAACCGTATGGCTACAGT
CCTTTGGTATTTGAGTGACGTATTGCAAGGCGGTGAAACGATATTTCCTC
TTCACAACGGCGGGGAAATCTCCTACGACAGCCGCCACTGCGAACGTATG
AAGGGCGCGCTTCGCTGTCCACCGAAGGAAGGAAGCGTGATTATCTTCTA
TTCCTTGCTCCCGAATGGCGATCTGGATGACCGCAGTCTTCATGGTTCTT
GCGCTGTTAAACATGGGGTCAAGTGGGCAGCCAACAAATGGATATGGAGT
GATGAAATCGCACCCATCCTGGGGCGTGCCTAGATGATGAAATCAACACG
CTCAGTTAATAAGGATACCAATGAAATCAATAAAATGAATTCATGTAAGG
ACGTCAAAGGAGCTGCTGCGAGCAGGAATATCCTGCAACATAGGTTAATA
GGAACCAAAAAAAGCGAATGGGTCAAGAACTTGCACGGTAGCCTGGCGAT
CATTGTGGTGGGGACCCTCGGTGCCCTTGCAAGTTATTTGGCGGGCTATT
TTTGGCGCAACGAGGCTGCAAAGCCTCTGGATTCCTACGAACGTATCCTC
TCTACTGTATACCCGCATGATTCGGCTTTTCGAACCGAGCAAAACTCTAC
GGTGTCGGGCCCATCCTTGGCTGGTTGCAGCATCTCTACCCTATTCGCCG
ACGAGCCAGTGCACGGGATGCACCTGGGTTGCATCCAACACACCCCAACA
GGTTTATATGCCACCATGTTTATGGATGGCCAGAATCACACCAGAAGAGA
AGTTATCGCTTCGATGAATGACTTCCAAGGTTTGCGCACACTGCTTGGAG
ACCGTCTAGGGTTAGCGCCTGTCGGTCGCCGCAATGGAGAAGGCCCACGG
GACAAAGAGACACCCAACACACAGAAGCCTTGGAGCATGTTCTCGCCTCA
AGGTATCGCCATTGACAGCCTGCTAGACCTACAGGAAGGAGCCAACGATG
TGCTGCTCTACGAGGGTGGAAGATTTATTTGGCCAGGTGTCCGTGAAGGA
TACGTCACGCAGGTGACGGCGTTGGACCGCCTAGGGTCCGTGAAGATGCA
GACCCTCTCTATGTCACCTCTTGTCTTCTCTGTCGAGAATTTCTTGCTTC
CCGAGGAATGCACTTACATTCGGGATGTCGCTGAGCCCCACATGCGACAG
TCGGGGGTGAAGCTCATGGACCACGACAAGGGCAAGGCGGCCACGGACTG
GCGGACGAGCTCCACGCACTTCCTTGCTTCCAAGCACCATGCCCGCATTC
AATCAGTCGACCGCCGGGTGGCGGGACTCACTCGGCAGCCTGTCTCGCAC
CAGGAAGACGTGCAAGTGTTGAGATACGAGTCCACGCAGCGTTACGATGC
CCACCATGATTTCTTCGACCGTCGCTTGTACGCGAGGGACCCCGACACGC
TCAAGCTCATCGATAATGGGAAAAGAAACCGTATGGCTACAGTCCTTTGG
TATTTGAGTGACGTATTGCAAGGCGGTGAAACGATATTTCCTCTTCACAA
CGGCGGGGAAATCTCCTACGACAGCCGCCACTGCGAACGTATGAAGGGCG
CGCTTCGCTGTCCACCGAAGGAAGGAAGCGTGATTATCTTCTATTCCTTG
CTCCCGAATGGCGATCTGGATGACCGCAGTCTTCATGGTTCTTGCGCTGT
TAAACATGGGGTCAAGTGGGCAGCCAACAAATGGATATGGAGTGATGAAA
TCGCACCCATCCTGGGGCGTGCCTAGATGATGAAATCAACACGCTCAGTT
AATAAGGATACCAATGAAATCAATAAAATGAATTCATGTAAGGACGTCAA
AGGAGCTGCTGCGAGCAGGAATATCCTGCAACATAGGTTAATAGGAACCA
AAAAAAGCGAATGGGTCAAGAACTTGCACGGTAGCCTGGCGATCATTGTG
GTGGGGACCCTCGGTGCCCTTGCAAGTTATTTGGCGGGCTATTTTTGGCG
CAACGAGGCTGCAAAGCCTCTGGATTCCTACGAACGTATCCTCTCTACTG
TATACCCGCATGATTCGGCTTTTCGAACCGAGCAAAACTCTACGGTGTCG
GGCCCATCCTTGGCTGGTTGCAGCATCTCTACCCTATTCGCCGACGAGCC
AGTGCACGGGATGCACCTGGGTTGCATCCAACACAC

Synonyms

Publications