rna6406, rna6406 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6406
Unique Name	rna6406
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1163
Alignment location	CM002468.1:446124..447446 -

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Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100020g76.5362.mrna
Orig protein id	gnl\|cribi\|Naga_100020g76.5362
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002468.1	supercontig	CM002468.1:446124..447446 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100020g76	gene6190	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24229.1	cds6390	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6406	rna6406-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002468.1:446124..447446-
coding sequence from alignment at CM002468.1:446124..447446-

mRNA sequence

>rna6406 ID=rna6406|Name=rna6406|organism=Nannochloropsis gaditana|type=mRNA|length=1163bp
CCATGTGACCCCCTTGATCGACTCGACAGTTGCCGTCTCGCCGATTTTGA
GCACTCTTACTTAGAGACACTTCAGTCTTTATGCGCGTCGAAAGCCACAA
TCCGTCTCACGTCTACTATTCTGTATTTGCAGGTGCGTAATTTACAAGCT
GTGAAGGTAGCGGATCAAATTTTTGCTCGAGGCTTGGGCCTCCATCCTTG
ATCTCGTTAGCACTGCCGCCCATGTCAAAGATCACCGGGACGCGGCTGTA
TCGACAACAAATGCCTCACAATCACATGGATGAGGGCATATCGAGGCTTC
CTGGTAACGATGAATCTCTAGCAATAATTCCTATCGTGAAAGGTCGACCA
CGTTTTCCTTTAATGGCGCTGCAGTTTACTATGGACGAGGACGAGAACTC
TGATGAAAACGACGTCGACGGCAACCTGACACGGGGAAGAGACTGGGGAG
ACGACAAGTACGAGGCGATATCGAGTAATTATATGGATGGATTCCAAGAC
GGTGTGGCATGCCGAGCACTAGTTATTCACCCCTCCAAGTGCAATGGCAA
TTTGTTGCACAAGGATTATCTCGCGGGCGGACGTTGTCCACGTGCCACCA
TGGAAACTCTACCGCAAGACACCATAAAGCAGATCCTCCGCTTTCTGCCC
GCACAGTCTCTGCTCGTCTCGGAAATGGTTTGTCGCCTTTGGCGCGACTT
AGCAAGCACGGATGATGCCCACTGGGAGGACTTGTGCAAGCGAACGTACG
GTCTTTCGCCTGAAAATTTCTCGCCGCCGCCGGATCCGGTGAAGCTCCTC
TACATGCTCACATATTCCTCCCTTTCTGAGATTAAATATGGTTCTAGTGG
TACAGGATCCGGGCGCATGGGAAGATTGGGGTTTTTGTTTTGATTCTCGA
CAGGATGAGGTGGAGGCAGCTGGTCCTCATAAATTTCGATACAGAGGTTG
CACTGGCGAGCACAAACAGTATTTTCGTGAGTTTTTTTTTGGGTAGCGTA
TCTGATGAGAAGAAATGTGCCATGTTGAATTGCTCGTTGTAAATTAGGAG
AAGGAGAGGAGAGGAGGGACGAATCCACACACATGTAAAGAGTGAAATCT
CTTCTTACCAAACAAAACGCAAATCTGCAAGCCCTTAAAAGAAAGAATTC
GCGGTTTGGAGAG

protein sequence of rna6406

>rna6406-protein ID=rna6406-protein|Name=rna6406|organism=Nannochloropsis gaditana|type=polypeptide|length=132bp
MKPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPE
PEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPHAETWLNHVCAVYRTAISL
PAALSPLGFSSSVPSKITSAFHARWMFFLPMF

mRNA from alignment at CM002468.1:446124..447446-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6406 ID=rna6406|Name=rna6406|organism=Nannochloropsis gaditana|type=mRNA|length=1323bp|location=Sequence derived from alignment at CM002468.1:446124..447446- (Nannochloropsis gaditana)
GATTGCATTCCTGGAGACGGCACAGACATGCTTCAGCTGCGTACCAGCAT
GAAGCCTGAGCCTCAAGCTACTCAGAAATAACACAGGCATACGATGAATG
TATCGGGTTCAAGGGCTCGAGACTCCCAGGAACGTAGGGGTAGGGCAGGA
AGAGTGGTAAGGCGGCTGGAAGCGAGACGGCGTTCCTGGAGACGGCACAG
ACCTGGTTCAGCCACGTATCAGCATGAAGCCTGAGCCTGAGCCTGAGCCT
GAGCCTGAGCCTGAGCCTGAGCCTGAGCCTGAGCCTGAGCCTGAGCCTGA
GCCTGAGCCTGAGCCTGAGCCTGAGCCTGAGCCTGAGCCTGAGCCTGAGC
CTGAGCCTGAGCCTGAGCCTGAGCCTGAGCCTGAGCCTGAGCCTGAGCCT
GAGCCTGAGCCTGAGCCTGAGCCTGAGCCTGAGCCTGAGCCTGAGCCTGA
GCCTGAGCCTGAGCCTCATGCTGAAACGTGGCTGAATCATGTCTGTGCCG
TCTACAGGACTGCAATCTCGCTTCCAGCCGCCTTGTCACCCCTTGGTTTT
TCATCTTCAGTTCCGTCCAAAATCACCTCTGCCTTTCATGCCCGATGGAT
GTTTTTTCTGCCGATGTTTTGATCGCTTTCAATTTAACAACTCTGCCCTA
AAGTTTTACACCGTTCCCGATCGACTCTTCCACACACAAATCGTATTTTC
GTGTTAGCATTCAATATTTTTAGATTTGTAGCTTGTTGTCTGCGGCAACA
CACTGGATTTGTCATGCCATGGCTTTCGTTAAGTATTCTGAGTACATGTG
TAGCCCTGCACAGGGTGGGATTGCGTGTTTGAGGGTGGGGGGGACTCTGG
CACCCTAGTGTTATGGCATGGTTTGAAAGAACATGCCCCTAGGACCTGGA
CAGAAAGGGAGATGACCAGGAGGAAGACCAGGATGTGGTGGAGATGGGGG
CAGATGGGGATCGGGACGTAAAAGGGAGTGACGAAGCCTTTTTTGCGCTG
GGTCTCCTCTCTTCAGTGGCAGCGGGCCAGGCGGTGGCTGAGACCGTGGG
TGGCGAGATGGAGGACACCTGACCAAATAATCTCCTCTACTTTCCTTTCT
GACTTGACTAATGAGTACATGCACATCTTTTAATGCAAGAATCACCATAC
ATTCCCAATGCGAATGCTCAAAAAGTCGCGACAAATGTCGACGTTGAAAA
AGGGGCGACAAATGTCAGGTCGACACCAGAATTCCAATGTCGTGGCAAAC
CTGGTCTGGGCAGCCCAGAGCTGACATGGGCCGGACAAATGGATTGCGGC
AGGCACGCCTGAGAGGCTGCATG

Coding sequence (CDS) from alignment at CM002468.1:446124..447446-

>rna6406 ID=rna6406|Name=rna6406|organism=Nannochloropsis gaditana|type=CDS|length=399bp|location=Sequence derived from alignment at CM002468.1:446124..447446- (Nannochloropsis gaditana)
ATGAAGCCTGAGCCTGAGCCTGAGCCTGAGCCTGAGCCTGAGCCTGAGCC
TGAGCCTGAGCCTGAGCCTGAGCCTGAGCCTGAGCCTGAGCCTGAGCCTG
AGCCTGAGCCTGAGCCTGAGCCTGAGCCTGAGCCTGAGCCTGAGCCTGAG
CCTGAGCCTGAGCCTGAGCCTGAGCCTGAGCCTGAGCCTGAGCCTGAGCC
TGAGCCTGAGCCTGAGCCTGAGCCTGAGCCTGAGCCTGAGCCTCATGCTG
AAACGTGGCTGAATCATGTCTGTGCCGTCTACAGGACTGCAATCTCGCTT
CCAGCCGCCTTGTCACCCCTTGGTTTTTCATCTTCAGTTCCGTCCAAAAT
CACCTCTGCCTTTCATGCCCGATGGATGTTTTTTCTGCCGATGTTTTGA

Synonyms

Publications